mRNA_Ecto-sp13_S_contig9.20543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9.20543.1
Unique NamemRNA_Ecto-sp13_S_contig9.20543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 719 bits (1857), Expect = 1.250e-260
Identity = 358/382 (93.72%), Postives = 369/382 (96.60%), Query Frame = 1
Query:   64 ATQAILPLDDDWCPTFLPLAGGARTPLQSNGPTNGSLEYAMGWDWTPSARIRWYWVLACLVALLRTSVGAGGPAGSRVEDKATIQTMESANATGTGTLPAISRHASCADIVAWLPSQSQPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNVPDDNDSN 1209
            ATQAILPLDDDWCPTFLP+ GGARTPL SNGPTNGSLEYAMGWDWTP AR+RWYWVLACLVAL+RTSVGAGGPA +R EDK TIQTME ANATGTGTL AISRHASCADIVAWLP Q QPAVVFQVVS+AYVSVQKNFISNMELHSTFSRENMYLICLDEESV+ FGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAI++FMEVVGEFTEELENDQQAVNLALQ+LDVVWDPTSDMSFS STRSGVGVV+SI SGESLTVSLLPHNKYTRSCRRTPISVETVVAHCIST+KGEGMATWMKEAHLWNVPDDNDSN
Sbjct:   23 ATQAILPLDDDWCPTFLPI-GGARTPLHSNGPTNGSLEYAMGWDWTPCARMRWYWVLACLVALVRTSVGAGGPADNRDEDKVTIQTMEWANATGTGTLLAISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDDNDSN 403          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 445 bits (1144), Expect = 7.000e-152
Identity = 227/353 (64.31%), Postives = 271/353 (76.77%), Query Frame = 1
Query:  160 TNGSLEYAMGWDWTPSARIRWYWVLA-CLVALLRTS-VGAGGPAGSRVE-DKATIQTMESANATGTGTLPAISRHASCADIVAWLPSQSQPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSIT-SGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNVPDDNDS 1206
            T+GS    MG  WT S R+   W+L  CLV  L+TS + A GP     E D   + TM  AN T  GTLP I++ +SC+D++AWLP +S PAVVFQVVSE Y S+++NFISNMELHSTFSREN+YL+CLDEESV IF  LGIRCVR+GC+GCPVSR  +W LRI+V++CLL AG DVLMSDADA+WL DP DD  SD + DS++VASR  MP PL+  WGATICMGF  FRAG +A+  FM VV E   EL NDQ AVN AL +LDVVWDP SDM+F+ +TR G GV+ +IT  G SL V+LLPHNKYTRSCRRTPIS +T+VAHC+S++KGEGMATWMKEAHLWN+PDDNDS
Sbjct:   68 TSGSPGCPMGTGWTTSVRVLRGWLLTWCLVVCLKTSSIHAAGPDAEPDEADNVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 420          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 2.790e-150
Identity = 222/345 (64.35%), Postives = 266/345 (77.10%), Query Frame = 1
Query:  184 MGWDWTPSARIRWYWVLA-CLVALLRTS-VGAGGPAGSRVE-DKATIQTMESANATGTGTLPAISRHASCADIVAWLPSQSQPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITS-GESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNVPDDNDS 1206
            MG  WT S R+   W+LA CL   L+TS   A GP     E D   + TM  AN T  GTLP I++ +SC+D++AWLP +S PAVVFQVVSE Y S++ NFISNMELHSTFSREN+YL+CLDEESV IF  LGIRCVR+GC+GCP+SR  VW LR+E ++CLL AG DVLMSDADA+WL DP +DF SD   DS++VASR  MP PL+  WGAT+CMGF  FRAG +A+  FM VVGE   EL +DQ+AVN AL +L VVWDPTSDM F+ STR G GV+ +IT+ G+ L V+LLPHNKYTRSCRRTPIS +T+VAHC+S++KGEGMATWMKEAHLWN+PDDNDS
Sbjct:    1 MGTGWTTSVRVLRGWILAWCLAVCLKTSSTRAAGPNAEPDEADIVVVHTMGLANDTVAGTLPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGSAMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENITANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDNDS 345          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 5.640e-75
Identity = 129/280 (46.07%), Postives = 181/280 (64.64%), Query Frame = 1
Query:  355 LPAISRHASCADIVAWLPSQSQPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIF-GALGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRA-GSNAIFKFMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSIT--SGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLW 1182
            LPAI+  A+CAD + W+P +S PA+V QVVS  Y+ +++NFI  MEL+S  +R+++YL+C+D  SV  F  ++ IRC+       P S   +W LR  V  CL++AG DV+MSDADA+WL DP  DF+     DSS+VASRG  P PL   WGAT+CMGFVLFRA G   + +F+EV+     + ++DQ +VNLA + L +VWD  SDM +  S   G G + ++   + +  +V+LLPHN YTR C  TPIS +TVVAHC + +  +    WM ++ LW
Sbjct:   35 LPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFP-SHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLW 313          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 8.790e-71
Identity = 136/318 (42.77%), Postives = 194/318 (61.01%), Query Frame = 1
Query:  352 TLPAISRHASCADIVAWLPSQSQPAVVFQVVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFK-FMEVVGEFTEELENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITSGESLT------------------------------VSLLPHNKYTRSC-RRTPISVETVVAHCISTEKGEGMAT-WMKEAHLWNVPDD 1197
            TLPAI++ A+C D  AW+P +S+PAVV QVVSE Y+ +++NFI  ME +S F+R N+YL+C+D+ S + F   +GIRCV    +  P +  H+W LR+ V  CLL+ G +DV+MSDADA+WL DP  D F   D     IVASRG+ P   ++ WG+T+CMGF+LFRA + A  K F++V+ +   + ++DQ +VN A ++L +VWD  SDM +  ST  G G++  + +  + T                              V+LLPH+ YTR C RRT  +  TVVAHC   +K  G+ T WMK+A+LW+V DD
Sbjct:   26 TLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLP-THEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSVQDD 342          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.840e-42
Identity = 88/184 (47.83%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  661 LKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIFKFMEVVGEFTEELENDQQAVNLALQELDVVWDPT-SDMSFSGSTRSGVGVVHSITSGES--LTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNVPDD 1197
            ++AG DV+MSDADA+WL DPM DF       SSIVASRG+ P  +   WGATICMGF+LFR  ++  A+ +F+ V+     E ++DQ AVN+A ++L +VW+   SDM ++ ST  GVG + S++  ++   TV+LLPH+ YTR C  TP+S  TVVAHCIS++  +  A WM    LW V +D
Sbjct:   64 VEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDED 247          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 9.180e-35
Identity = 74/150 (49.33%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  487 MELHSTFSRENMYLICLDEESVDIFGA-LGIRCVRFGCMGCPVSRHH-VWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSN--AIFKFMEVVGEFTEELENDQQAV 924
            MEL ++F+R ++YL+CLD++S+  F + +GI C+     G  +S H  +W LR+ V  CL +AG DV+MSDADA+WL DPM DF      DSSIVASRG  P  + + WGAT+CMGF+LFRA +N  A+ KF+ V+     E E+DQ AV
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLS--GLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.870e-32
Identity = 88/259 (33.98%), Postives = 131/259 (50.58%), Query Frame = 1
Query:  439 VVSEAYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAG-IDVLMSDADAVWLHDPMDD-FDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFK-FMEVVGEFTEELENDQQ-----------------------------------------------------AVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITSGESLT 1044
            VVSE Y+ +++NFI  ME +S F+R N+YL+C+D  S + F A +GIRCV    +  P +   +W LR++V  CLL+ G +DV+MSDADA+WL DP  D F         I+ASRG+ P    + WG+T+CMGF++FRA + A  K F++V+ +   + ++DQ                                                      +VN A ++L +VWD  SDM +  ST  G GV+  + S  + T
Sbjct:    5 VVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLP-THQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGLGSSNNST 262          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: A0A7S0SXH7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXH7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.110e-14
Identity = 58/198 (29.29%), Postives = 101/198 (51.01%), Query Frame = 1
Query:  526 LICLDEESVDIFGALGIRCVRFGCMGCPVS------RHHVWALRIEVSVCLLK-AGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEELEN-----DQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITSGESLTVSLLPHNKYTRSC 1083
            +IC+D+ S +    +G+ CV         S      +H++W  RIE+   L+     DV+++D D++W++ P++D  S     SSIV+SR   P  L+  WGAT+CMGF+ F+A   + +   ++    ++ + N     DQ   N  L +  + W     MS   +  + +G +    +  S +++LLPH KY R+C
Sbjct:    1 IICIDDSSFNQLLDIGLYCVLSNNFVSDKSFNKNDYKHNIWLRRIEILSHLINNENQDVILTDLDSLWINSPLNDI-SIHSASSSIVSSRAWWPHELWSVWGATLCMGFIYFKADEFSKYFVNKIYLTMSDNINNYRKVDDQITANEELYKNQIEWFD-KPMSVGNNAIANIGSISY--NNMSYSITLLPHYKYIRNC 194          
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Match: A0A2J7TK26_METSI (Nucleotid_trans domain-containing protein n=1 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TK26_METSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.700e-9
Identity = 63/231 (27.27%), Postives = 104/231 (45.02%), Query Frame = 1
Query:  526 LICLDEESVDIFGALGIRCVRFGCMGCPVS--RHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAM-PVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEELENDQQAVNLALQELDVVWD-------PTSDMSFSGSTRSGVGVVHSITSGESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNV 1188
            ++ LDE +     A G+  +       P+S  R   W  RI+V   +L AG D++ SDADAVWL DP+    +     + +V ++G + P    +  G  +C G +  R+ + AI +F   V +   ++ +DQ AVN  + + D VW        P  D  F  S     G      S + L + +LPH+++ R      +     VAH ++    +     + E+ LW V
Sbjct:   35 VVALDEATFAAMRARGVNAL----FRPPLSFRRGDFWLHRIDVIAEMLVAGDDIVHSDADAVWLRDPLARLTA---TSADLVFTQGTVFPSETLQRRGFVVCCGLMFIRSNAGAI-EFWRNVRDVAVDVRDDQWAVNKVIDQSDCVWTLTDRYEAPCFDTVFHASRFIITG------SMKDLAIEVLPHHEFPRLME---LGENPFVAHPLADSPIDDKIDVLSESGLWFV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9.20543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LSV3_ECTSI1.250e-26093.72Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FGV6_ECTSI7.000e-15264.31Acetyltransferase (Isoleucine patch superfamily pr... [more]
A0A6H5KMQ8_9PHAE2.790e-15064.35Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5LI82_9PHAE5.640e-7546.07Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D8LK17_ECTSI8.790e-7142.77Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D7G4E2_ECTSI2.840e-4247.83Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FQM0_ECTSI9.180e-3549.33Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5JTX9_9PHAE7.870e-3233.98Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A7S0SXH7_9STRA4.110e-1429.29Hypothetical protein (Fragment) n=2 Tax=Chromulina... [more]
A0A2J7TK26_METSI2.700e-927.27Nucleotid_trans domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9contigEcto-sp13_S_contig9:2290..7226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score730.7
Seed ortholog evalue3.7e-208
Seed eggNOG ortholog2880.D8LSV3
Model size1214
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
EggNOG OGs2C6NG@1,2SGR5@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferase
Ec32 orthologEc-26_001550.1
Cds size1212
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.6345742-CDS-Ecto-sp13_S_contig9:2289..33801681464172.6345742-CDS-Ecto-sp13_S_contig9:2289..3380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9 2290..3380 -
1681464172.648169-CDS-Ecto-sp13_S_contig9:6206..63081681464172.648169-CDS-Ecto-sp13_S_contig9:6206..6308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9 6207..6308 -
1681464172.6585252-CDS-Ecto-sp13_S_contig9:7207..72261681464172.6585252-CDS-Ecto-sp13_S_contig9:7207..7226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9 7208..7226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9.20543.1prot_Ecto-sp13_S_contig9.20543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9 2290..7226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9.20543.1

>prot_Ecto-sp13_S_contig9.20543.1 ID=prot_Ecto-sp13_S_contig9.20543.1|Name=mRNA_Ecto-sp13_S_contig9.20543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
AAAIRRATTSTRAVVYRLLARATQAILPLDDDWCPTFLPLAGGARTPLQS
NGPTNGSLEYAMGWDWTPSARIRWYWVLACLVALLRTSVGAGGPAGSRVE
DKATIQTMESANATGTGTLPAISRHASCADIVAWLPSQSQPAVVFQVVSE
AYVSVQKNFISNMELHSTFSRENMYLICLDEESVDIFGALGIRCVRFGCM
GCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYR
DSSIVASRGAMPVPLFRTWGATICMGFVLFRAGSNAIFKFMEVVGEFTEE
LENDQQAVNLALQELDVVWDPTSDMSFSGSTRSGVGVVHSITSGESLTVS
LLPHNKYTRSCRRTPISVETVVAHCISTEKGEGMATWMKEAHLWNVPDDN
DSN*
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mRNA from alignment at Ecto-sp13_S_contig9:2290..7226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9.20543.1 ID=mRNA_Ecto-sp13_S_contig9.20543.1|Name=mRNA_Ecto-sp13_S_contig9.20543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9:2290..7226- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCAGCAATCCGACGAGGTGAGAGCAGATGCTCCTCTTGCGGTGGTTT CCTATGGGGGCGAGTTCGGGCAAGTTTCGCTCTCGCCAGTGCTGGGGAAA AGTGGAGAGACCACAAGGCAATCACACGCCTTCTCTCATTTCTTGGGCCT ACACAACAAGCTGGAATGTTGACCTCGGCCAATCAAGTCACAGTGCCTGG AATCCTCTGGGAGAGTGTAGTCATCATCCACTTTTTTCTTGTCTCGTTAA GCACCGACCTTCGAACGAAGAGGCTTGTGCGAATAGTATAACAACTCTCG GGCAGGAACGTAACACACCATGCAGTACAGATGTACCGGCGTATCAAAGC ATATACATCTACAACACATGTAGGAATTCTTGCCGGAAAATTCCTGGATC CTGGAAAGTTCCCGGAGTCTGGAAGAACTGTTCCAAGTTGGAAATCAGGT GGCAGCTGAACGCACACAACGGATAGTTTACCTTGCGCCGTTTGTAGTGT GAATGCCTTGTAATTCCACTACCTAGCCTGCTGTTCCCATATGCGCTTGT GTGTGCTGACTCCATCTATGGTGGCCGTGCACGTATGTAGTCGTTGAACC TCTCACCCCAAGAAGAACACCACCCGAAAGTTGCACCGCTTCTGACACAG GCAACGTGTGTCACAACGGTAGCAGCCGGTATGTGCCAACCTGGGATATG CAGCCTTGTTGGTCTATCCTCTTCATACTCTACTCTACAGCAGACTCGCT TGACGGGGGTAGCGCATCGATACATCTCGAGGCTCACACCCCGACGCTTT CAAGACTCTGAAAATTGCACTCATCATTCAACAAGTTGCCCGATGCTTTG AGAAGTTGGACTTGGGTGGACACTACTTCTCACATATGATGATGGGGTAG ACACGTCCACACATCCAGCCACAACATCTACACGGGCTGTGGTTTATCGG CTTTTGGCTCGGGCAACCCAGGCTATCTTGCCCCTTGACGACGATTGGTG TCCAACCTTCCTTCCCCTAGGTAAGTGGTGAACACCCGGGTGATAACTGC TGGTGGTCGTGTACTGCTGCTGTACAGTTTTCCTGATCGCCTGCCCGCCC GCCCGCCCGCCCGCCCGCCGGAACAAACTCTTGTGTCAAGCAGCAGTAGG TGAAAGAGTCACCTGCCTCATTGCCGTTCACGTCACACATGTACCATGCA GATTCCATCTGTGCCCCAAAGGCGTTGGCAGCCCTTGATCGGTCTTCACC CCGAAAACGTGATCCGACGTGTGGCAGGCGCGACCATTCGACAGACTACG TATGTTCAACAGCTTTATGAGTCCTCGTGAAGCCCTCTCGTTGTTTTTGA GCCACAGTTTGTCTGCTTCGGTCGTAAGAAGGTTAGCCATCGTCTTCCCC TTTCGTCCTTCGTTGCGTGAGCGAAGTACGTTGAACAAAATGTGATTGAA AAGTCACTACGCTGTGTCATGCTCGGCAACTGAACACTGCTACACTGCTG TAGTTTGTATTGTTGGAAGCAATACCCAGAAACGGGTATACCCGGGTGGA TTATAACCATTTAAGGGTATACACTGAGAACTCAACATATATGCAACCCT AGGCAGCCAGCTGATTGGCTGAAACACCATCGTACCAACTTTTCGAGAAA CGTCCATCGGGTACACCCGGCGCTGGCATCTCGACCCTCTAGTGTAAACG ATACTGAGTGCTAAAGGGGTCGATTTCGAACCCAGCAATGGTCATATAAT TCCAGCGCCCTACGAATCTAGCAAAACCCGCAGAAAAAAACGTGTACCGC ACATACATACCCACAACCAAACCACCAACAAAGCTCGTTGATGGCGCTTC CATAGGACACCGGCCCCCTCTCGACAAAGGGTCGCAATCGCTTGACACGG GGGTTCGTTGGGTGTGGTGCTGATCAGTAAACGCACACAGAAAGAGGCAC AGAGAGACAAAACGGCACAGAGAGACGAAACGGGCACGACCTGCCTCGTG CATCATGCTTCCAAGGCACAGGACACAGCGGTTTTTTGGTTTCGCCGCGA TCTACGGCGGAGAGTGTCGGAGATTGGTATCGTGTTGATTTCCGAGTGTG CGCTGAAATGGTGATAATTCACCCGGGTATAGCCGTTTCGGGTTACTTCT CTTGTTGGCAAGGTACATGCAGCAGTTAAGCACTCACAGAAAGGCTAAAA GCCATAGACTAGAAGCCGTCCGAGATAATGACCAAAGCAATTCGATTGGG GTGTGTCGAGTATCAACAGTAGCGGTGAGCGGGAGAAAACCCGGCTGAAA GGTTTGTGGAGACAAATGAACTCACAACCCATCCCCACTAGAGCATTTGC CCCTCCGACGTAACTGAGGAAAGGTTTGGGGACTCGGTTCTCAAATATCC TTCTCCGGGGAATAACCTAGCGTCGTCCTGCACTGTCATGCATATATGTC CGCTGTGAAGCCAACAAGAATACGCTGACGACACAATTTGGTGCAGGGGA AGCTCCGCTGACCAAAAGAGGTTGAGAGTTCGATTCACATCTATCAGTAC TACTACAGAATCGACATGTTCTTTTCCGCATTAGAAACTGGGAACTGCGT AAAGCGTTGACGTTCGTGTTCGTTTGACATGGGCCAGGAGTTGTCTTCTT CACAGTAGCAGCGCTTGCCACTGGAGGCAGTTCCTCCAAAAGATGGTGTT GAAATTGAACTCCGCTATAACCACTCTCGTGTTACGGCAGGTGGAAATAT TTTTCCATGCTGTAGGGGATAGCTCCTCTAGCTGATCACTTCTGAGGACG GCATATCGAGCTCCTGCCCTTTTCTGAAACCTCCGCTGCTCGGCTTCTGA CCATAGAGGGGGGTGCCTCGCCCTAAGGCACCCTATGCCAACAGCAGGAA ACTGGGTTTTCGAAATCACCAAACAATACCGTAGAACTCCCGTGCCTAAG GGAAACTGATGTCTGTTCCTCCGATATCATCAGAGGTGCCTACAATGATG ACAGAGCATCAAATGTATGTTTTTTTTTTTTTGTTGACATCGGTTCTGCT TACTCCCACAAGCCCGGAACCCTCAGTTATCTTCCCAGATTCCGACAACG CACCACCCAACTGTTCCTCGTTCATTTGGCACACTCGTTGGGCTTGTAGA CGCCGTATTTTGTCTAGCGCACATCCGTAGGGCCACAAGGAGCACCGTGA GTTTCAGTCTTTGGCAAGGATGTTGAGTGGACTCCATATCCCCCCCACCG TTCCGACTCACAAGGCGAGTAGTGAACGTAAGGATTGTGTCCCTATTTTT TTCTCACAATACCTTTCCACGGTAACCCAAGCGACCCGCACACCACAAAA CAACCTCACTGGAGAAAGGAAGGGGAGACACTCTCACGCACCAAGGCCGG AGCCCAGCGGAGTTTCTAACCTACAACCTCAAACTTACCCAAACGGCTAG AAGCCCCGCAGAAGATATCTAGATTAAGTACGAAACAGGTATCTTGGGGC AGAAATTGGTAGGTATGCAATGTGTTTGTTGGAAACAATGCACCGCGTCG TAAGTATATACCTGCTGGTTCGAGGGTGTGCTAGCTGAATACCGGCAGGA AATCCCGATCGCAGCTGTTTGGGGTGTACGGCCTGTCAAACAAGTCGTTC GGATATCGTAGGACCATTCCATCAGGGTTCATTTTCCCTACTCTCCGCAG CGTTGTCTTGCCCGCGACTAATGTTCTGTCGCGGGCACGCGTGAGACCCA TTCGGAAAATATCACCCGAACTTGCCAAAGCAGGCAGAACGTCGTACTGG TACAAGCACACCTTGACGTGACATCTACAATGTTTTTCTCCTTGAGCAGG TGGAGCAAGAACTCCGCTGCAATCGAACGGTCCGACAAACGGGTCGCTAG AGTACGCAATGGGATGGGATTGGACCCCAAGCGCTCGGATACGGTGGTAT TGGGTACTTGCTTGTTTGGTGGCACTTCTGAGGACATCCGTGGGTGCCGG CGGCCCGGCCGGTAGCCGTGTCGAGGACAAAGCTACCATCCAAACAATGG AGTCGGCCAACGCCACGGGTACGGGAACCCTTCCAGCAATATCAAGGCAT GCGTCTTGCGCCGATATTGTTGCTTGGTTGCCTTCCCAATCACAACCGGC GGTGGTGTTCCAGGTTGTGTCCGAAGCTTATGTCAGCGTGCAAAAGAATT TTATTTCGAACATGGAGCTGCATTCGACTTTCTCCCGAGAAAACATGTAC CTAATTTGTCTAGACGAGGAATCTGTAGACATTTTCGGGGCTCTGGGGAT ACGTTGCGTTCGGTTTGGCTGCATGGGTTGCCCAGTGTCACGCCACCACG TATGGGCGTTGAGGATTGAAGTCAGCGTATGTCTTTTGAAAGCTGGCATA GATGTTTTGATGTCGGACGCCGACGCAGTTTGGCTCCACGACCCGATGGA TGACTTCGACTCTGATGATTATAGGGATAGCAGCATTGTCGCGTCGAGGG GCGCAATGCCGGTTCCCTTGTTCCGCACGTGGGGTGCGACTATTTGTATG GGCTTTGTCTTGTTCCGCGCTGGGAGCAACGCAATTTTTAAATTCATGGA GGTCGTGGGAGAGTTCACGGAAGAATTGGAGAATGATCAACAGGCGGTGA ATCTGGCGTTGCAAGAGCTCGACGTTGTGTGGGACCCAACGAGTGATATG AGCTTCTCAGGCAGCACGCGGTCAGGGGTGGGGGTGGTACATAGCATCAC TAGTGGGGAATCGTTGACAGTGTCTCTTCTGCCGCACAACAAGTACACAC GAAGCTGCCGGCGAACACCAATTTCCGTCGAGACTGTTGTCGCCCACTGT ATCAGCACTGAGAAAGGAGAAGGGATGGCTACATGGATGAAGGAGGCACA CCTGTGGAACGTTCCGGACGACAACGACAGCAACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9:2290..7226-

>mRNA_Ecto-sp13_S_contig9.20543.1 ID=mRNA_Ecto-sp13_S_contig9.20543.1|Name=mRNA_Ecto-sp13_S_contig9.20543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9:2290..7226- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCAGCAATCCGACGAGCCACAACATCTACACGGGCTGTGGTTTATCG
GCTTTTGGCTCGGGCAACCCAGGCTATCTTGCCCCTTGACGACGATTGGT
GTCCAACCTTCCTTCCCCTAGCAGGTGGAGCAAGAACTCCGCTGCAATCG
AACGGTCCGACAAACGGGTCGCTAGAGTACGCAATGGGATGGGATTGGAC
CCCAAGCGCTCGGATACGGTGGTATTGGGTACTTGCTTGTTTGGTGGCAC
TTCTGAGGACATCCGTGGGTGCCGGCGGCCCGGCCGGTAGCCGTGTCGAG
GACAAAGCTACCATCCAAACAATGGAGTCGGCCAACGCCACGGGTACGGG
AACCCTTCCAGCAATATCAAGGCATGCGTCTTGCGCCGATATTGTTGCTT
GGTTGCCTTCCCAATCACAACCGGCGGTGGTGTTCCAGGTTGTGTCCGAA
GCTTATGTCAGCGTGCAAAAGAATTTTATTTCGAACATGGAGCTGCATTC
GACTTTCTCCCGAGAAAACATGTACCTAATTTGTCTAGACGAGGAATCTG
TAGACATTTTCGGGGCTCTGGGGATACGTTGCGTTCGGTTTGGCTGCATG
GGTTGCCCAGTGTCACGCCACCACGTATGGGCGTTGAGGATTGAAGTCAG
CGTATGTCTTTTGAAAGCTGGCATAGATGTTTTGATGTCGGACGCCGACG
CAGTTTGGCTCCACGACCCGATGGATGACTTCGACTCTGATGATTATAGG
GATAGCAGCATTGTCGCGTCGAGGGGCGCAATGCCGGTTCCCTTGTTCCG
CACGTGGGGTGCGACTATTTGTATGGGCTTTGTCTTGTTCCGCGCTGGGA
GCAACGCAATTTTTAAATTCATGGAGGTCGTGGGAGAGTTCACGGAAGAA
TTGGAGAATGATCAACAGGCGGTGAATCTGGCGTTGCAAGAGCTCGACGT
TGTGTGGGACCCAACGAGTGATATGAGCTTCTCAGGCAGCACGCGGTCAG
GGGTGGGGGTGGTACATAGCATCACTAGTGGGGAATCGTTGACAGTGTCT
CTTCTGCCGCACAACAAGTACACACGAAGCTGCCGGCGAACACCAATTTC
CGTCGAGACTGTTGTCGCCCACTGTATCAGCACTGAGAAAGGAGAAGGGA
TGGCTACATGGATGAAGGAGGCACACCTGTGGAACGTTCCGGACGACAAC
GACAGCAACTAA
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