mRNA_Ecto-sp13_S_contig8993.20537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8993.20537.1
Unique NamemRNA_Ecto-sp13_S_contig8993.20537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8993.20537.1 vs. uniprot
Match: A0A6H5KUM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM0_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.010e-74
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 2 
Query:    2 MAEEVERARACIHSFYNTDDVASREERREVRSRASLQALDRGDSGCAMTPVDMARAMTGLLRMHQSELEMQESIVYGLGYETPAESITGYREALRMRPYLDDQYRSQAQEIRDLSQELEEAGGLM 376
            MAEEVERARACI+SFYNTDDVASREERREVRSRASLQALDRGDSGCAMTPV+MARAM GLLRMHQSELEMQESIVYGLGYET AESITGYREAL MRPYLDDQYRSQAQEIRDLSQELE+AGGLM
Sbjct:  124 MAEEVERARACINSFYNTDDVASREERREVRSRASLQALDRGDSGCAMTPVEMARAMAGLLRMHQSELEMQESIVYGLGYETSAESITGYREALGMRPYLDDQYRSQAQEIRDLSQELEQAGGLM 248
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BLAST of mRNA_Ecto-sp13_S_contig8993.20537.1 vs. uniprot
Match: D8LS45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS45_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.370e-35
Identity = 70/100 (70.00%), Postives = 74/100 (74.00%), Query Frame = 2 
Query:  143 MTPVDMARAMTGLLRMHQSELEMQ----------------------ESIVYGLGYETPAESITGYREALRMRPYLDDQYRSQAQEIRDLSQELEEAGGLM 376
            MTPVDM+RAM GLLRMHQSELEMQ                      ESIVYGLGYETPAE IT YREAL MRP+LDDQ+RSQAQEIRDLSQELE+AGGLM
Sbjct:    1 MTPVDMSRAMAGLLRMHQSELEMQSRPSEEERERLQTXXXXXITTKESIVYGLGYETPAELITSYREALGMRPHLDDQHRSQAQEIRDLSQELEQAGGLM 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8993.20537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUM0_9PHAE1.010e-7495.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS45_ECTSI4.370e-3570.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8993contigEcto-sp13_S_contig8993:1402..6556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004850.1
Cds size378
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8993.20537.1prot_Ecto-sp13_S_contig8993.20537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8993 1422..6555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.0850494-UTR-Ecto-sp13_S_contig8993:1401..14211681464172.0850494-UTR-Ecto-sp13_S_contig8993:1401..1421Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8993 1402..1421 -
1681464172.1524327-UTR-Ecto-sp13_S_contig8993:6555..65561681464172.1524327-UTR-Ecto-sp13_S_contig8993:6555..6556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8993 6556..6556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464172.0973063-CDS-Ecto-sp13_S_contig8993:1421..14691681464172.0973063-CDS-Ecto-sp13_S_contig8993:1421..1469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8993 1422..1469 -
1681464172.1101975-CDS-Ecto-sp13_S_contig8993:1788..19051681464172.1101975-CDS-Ecto-sp13_S_contig8993:1788..1905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8993 1789..1905 -
1681464172.125461-CDS-Ecto-sp13_S_contig8993:2371..25471681464172.125461-CDS-Ecto-sp13_S_contig8993:2371..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8993 2372..2547 -
1681464172.1416242-CDS-Ecto-sp13_S_contig8993:6518..65551681464172.1416242-CDS-Ecto-sp13_S_contig8993:6518..6555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8993 6519..6555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8993.20537.1

>prot_Ecto-sp13_S_contig8993.20537.1 ID=prot_Ecto-sp13_S_contig8993.20537.1|Name=mRNA_Ecto-sp13_S_contig8993.20537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MAEEVERARACIHSFYNTDDVASREERREVRSRASLQALDRGDSGCAMTP
VDMARAMTGLLRMHQSELEMQESIVYGLGYETPAESITGYREALRMRPYL
DDQYRSQAQEIRDLSQELEEAGGLM*
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mRNA from alignment at Ecto-sp13_S_contig8993:1402..6556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8993.20537.1 ID=mRNA_Ecto-sp13_S_contig8993.20537.1|Name=mRNA_Ecto-sp13_S_contig8993.20537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8993:1402..6556- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGGCGGAGGAGGTCGAGCGGGCGAGGGCTTGCATACGTGAGAGAGGAG
GGGATGGGATAGAGTCGCTGATGGGCACTCTCTAAGTAGGTATATATTGG
TTGGCTGTACAGCAATCGGGTTTTCACTTCTTCCCCGTTATACCCTCGCT
TAGGGAGGTCACAAGAAGATCGGTTCAACGGCTTGATATCATGTAACATG
GTTCAACAGGCTGGCTATCTCAACTAGTATGTCCTTCCATCTACTGCTGT
ACATAATGGAATGAGGACCGAAAAATAAATGTGTTCCGAAAACGAGAGTG
CACGGGGATGACCGTAGGTAGATACCGTAGACTTGATGCGAGTGAGTTCC
CTTTCGAAGTCGCTTCTCTCTCCCTCTCTGCTGTGTGTTGAGGTAATTTA
TCGCCCCCCCCCGTGCCATCGACTTATCCCGGATGGGTCCGAAGCGGTAC
TCCCTACAATACTGTGGTGCGGAGGGCGGAAATACAAATTGAACGTGGAA
ACCTTCGGGGTATTTATTTTCATTTTTTTTTTCGAAAATTTGAATTATTT
TTTGAAATATTTGGAAGAATGTACAAAAGCGCTACCACACTGCTGTCTTG
TTGACCCCGTCACCCACGGGGGAGATATCGTTGGATGCTGCTCGGGAAAT
CGTGGAAACACAGGTAGCAATTGCTAGTCTGTCTTGGACTCTTTTCTTAG
ATAGAGATGGATAATTTGTGCCATATTAAGAAAATAAAAAAGAAGGCAGC
CCCCCGCCCCGACCGACAAAACGTCTTTTTGATCTAAAGTATAAATGTAT
AAGAGCGACTCCCCTCCGACACGATCATGCGATGCCGAGTACTACACAGC
GGCCTTGTGGGCCTCTGTGGAGTTTCGTAGGAACCCTAGTGTGATTACTC
CGAAAGGTGCGACACCACTATTTTATGATTTATCGTCTGTTTAGATTCTG
TTTCCACTGATATCTACCTGCATAGCACGACGGAGTGCTGTTTGTACGAG
TATGCACGTGAGGTAGTAGATACCGACACAGGGGTAATCACCGATAATTT
TTACCGGTGCAAACATCGAGTGATCCATCCGTTCTTGTTTTTTTTGTTGA
ACCCGGTGCGCGACTTGACTCTGCTACTGCCATACTGCGACGACGGGCGA
TGGGTGCATTCAAGCCGACGCTCACAAGGGAATTGTGCCCCTCCAGAAAC
CACACACCCGGTCCAAGAGCGGAAATATCCACAGAAAGTCACGGTTTTGA
TCAGGTGCAAGGATAAAAGACCTCAATGCATACCGCAGTTCTATTTTTTC
CAGTTGAAGTTAAAGAGCGCCCTGAACGATTGAATCGTGGGGAGCGGAAT
AACGGAATAACATTCATGACCCTACCACAAATCAGCCGAGCGCTTCCCGC
AAGGTGGCCTCGAGGGTCGGCGGCAGTAAAACTGTTCGTTGTTTCGCTCT
CGCTGCGTTGCTACACAGCACGAGGGAGAGTCTTCACAGCAACCGCACAA
CCACCAGCTCCACAGCCAACCGGCGAGCAAAAGAATACCCCCTCGTCCTC
TTTATGTATGCTGACCAACAACAACGCGACAAGAATGTTGCTGCAGAAGC
AGCAGAAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGCTGCTA
CCCCCGCCGCACACAATAAACTTGCAGTAGATGCCGCGGTTCTCTTCTTC
TTCCTTCTGTGGTTTTTGCCCGCCCTTCCGGATTGCGCCCGAGGGTCTTC
CCGTCCCGCGTAGCTCGGGGGGCTCACTGTAGCCGCAGTCCCCATCTCCA
CATCTCCGCAAGCCGCAAAAATACGACAAAAAAAAAATAAATGGCACAAA
AAGCTACCTCACTCAACCGTGTTTCCTTTGTTCGTTGTTGTGCCGCGCGC
TCAACTCCAAACTCCTGTTTGGGTGCATGTTTTGAATTGTTTTGTTCCGT
TTTTTTCGTAATAGACTCTTTCGGACTCAAAAAATTTCCGAAACAAGGAA
ATATATTTTGACTTAAGCCAACGTTCTGAGGATCGTTCCTGACAGTCTGG
CCAGAACCCAAGATCAGGAAAAAAATAATCAGATTAAACAGCGGAGGGAG
GCGCCTTTTGTGGAAAGTGTTTGACAATTTTCCGATTTAGCAGCATTCTT
CCAAGGTTCAATTTAGAACAACTGTGCAGTGTAGTATTTTATATTCCAGT
ATCGAAACCCGTACTGCACCGCCAGTACCAGTACAGTTTGGATGATTGAA
TACTGTACTGGGTCGAGTATAGTATTGAGACCTGTACTAAATAGTACTAT
AGTACAGTATTGAGAGCTGTACTAAACGCAATAGTACGTATAGTACAGTA
TTGAGAGCTGCACTAAACGCAATAGTACGTATAGTATTTTGGTGAAATAC
TGTACTGGGGCGAGAGTAAGTATTGAGACCTGTGCTAACCGCAAATAGTA
CGTATAGTACAGTATGAAGAGCTGTACTAAACGCAATAGTACGTATAGTA
CGTGTGAAGAGCTGTACTAAACGCAATAGTAAGTACAGTACAGGATGGAG
GTACGTACTAAACCCCCAGTACCGTGAGCCAAATACTTACTAAAATACTG
GAAAGTCTAATAGTACGTTCTATACTAAATTGACCCTTGCATTCTTCGTT
TTAACACCTAAGACACTACACCCACGCACGCACAGCAGTCCGCGCGGCCA
AAGAGAAGCCCAGCGCCCACCGAAAAGGCCCTGGAGTTGGCGCGGCACCA
ACAGGAGGGAGGCTGCACGGTCAGAGAGCCAAGTTGGGCTTGTTTGCGCG
GCTTTAGGTCAGCAACATCCGCCCGTCACACACAGGTTGAGGCAATGGGG
AAGAGGAGAGAGCGAGCGCCGGAACCGCAGAGACAGCGACAACCGATGAC
ATAGAGGTGGTGGAAGCACCGCCAGCAAAGAGGAGCACACAGACAGGAGG
AAGAGCACGCACTTGGCCTCCTGGTGTAGACGGGCGCGGCCTCCCCGCGC
AAGATTATTCTCTGCTGGTTCTCTGCTAGCATGGAGAGAGAGTTTGACTT
GATGGCCCCCTTCCCAATAACAACCTTTTCTCTCCCAAACGCTTGAAATG
CGACACTGCAATTCGTGCAGAGGCTGCCGGCCAGTACAATCACTCCCTCC
CTCCCTTTTTACGTCCTGGTGCGATTTGGTGTGGTGAGGTTGAGGGGGGC
GGCACAGAAGATACGCACACGCAATGCATGCACGCACACTCAACAGCAGA
GCAGTGAGAGAGAGCGGTGTCAGCAGGGTGCAGCTGTCACGCAGCGCACC
ACAAAAAAGCAGCACCACCTGCGGTCAGGGGAAGTTCGTTGGGTGGGAGA
GGAGAACTGTTGCCCCTCAGCCAATCATATGAAGCCGCTTAAATCTAAAA
ATGTTTGCCTGCAGGAAGTTTCCAGGAAACTTTCTTAATTCTTAATCTGC
TTCCTTAAATGGAAAAATTTCGAGCCCCAGTCCGAATTTGTGTAATATAA
CACAACAAAATCCATATCTATCCTAGAAAAGAATCTACTGTAGATTACTG
CTGTCGCGATGAATATTCGTAGCGTCAGCGGAAACTAGTATCAAGTAGAT
CTTTGAAAATGGGGGTTTGACCCGCTGGCCACTTTGTATTTTACATGTTT
GTCCTTGTGTTTGTCTTGATGTAACACCGCGAATCCATCCCTATCCACGG
GTAAGGGTTATCTACTCTGGGAGAGTGCTGTGGATCTTCCTGCCGAACCA
AGTAGCTCGGTCTGGGTGTGCATGAGCCATGGGTGGGTGCGCACAATTTT
TTTCCGGTAATGGCGGGGCCTCACTCGCATGGTTACGGCTCGTCAACAAA
AAATGGCAAGACATGTGGCGGCCAATCACGTGGTTTGACGCGAGGTGCGT
GCCAAAGCTTTCCCTCCGATATGTACGCGAAAACCGCCAGCGCTGAATAA
ACCGCGCACCGCCGTTTTATGTCGTACATACCTTTATTTGTGTTGGCGAC
ATGAGACAGATTCGTTCTACAACACGGACGACGTGGCCAGCCGAGAAGAG
CGTCGAGAGGTGCGGTCGAGGGCATCCCTGCAGGCGCTAGACCGCGGGGA
CTCCGGCTGCGCCATGACGCCGGTGGACATGGCGAGGGCAATGACCGGGC
TGTTGCGAATGCACCAGAGCGAGTTGGAGATGCAGGTGAATATTTATTTT
CCTCACAAGCCTCAAGAGTCACGCCTTTTTTGAATCAGACCGGAACGATA
GAAGTACGTGTGTGCAGCGCAGCTTGCTGTGGGGACTGATTGTAGCGCGA
AACGTGCTCCTTCGCGCCACATTGCGCCTCCCGTAACCGGCGCGTCGCTT
CGCGCTTTGCTTGGGTACCGTCCCGACCAAGCGAGGAGTAATGCGATGGC
TTGCAGACCCCCCCCCCCCCCCCCCCCCCCCACAACCAGAAACCAAACAC
CAACAACAGGCTCACAACAAAACACGAAATGACAATTTTTCTCTGCGTTG
GCTTTTGNNNNNNNNNNTATGTGTTGTTGGCGCCCCCCCCCCCCCCCCCC
CCCCAAACACTACGAAGGTACCAGAGATTCTCTAGCGGTCCGAGTAAAGA
TCCTGCAACGTTCTTTCCGCACGTTGATGTTTGTGCGGCGCGCGGCAACA
GGAAAGTATTGTGTACGGTCTGGGTTACGAGACTCCCGCTGAATCCATCA
CGGGGTACCGGGAGGCGCTGCGGATGCGACCCTACCTGGATGACCAGTAC
CGATCCCAGGCACAGGAGGTTCGTATGTTTGGTCATGTGAGAGAGATGCC
GAGAGAGAGAGAGAGAGAGAGAGAGACAAGAGAGACAAGAGAGACAGAGA
GAGAGGAACGCGCAGAAAGTGTCGCAACATGTTTCGATTTTACCTATATA
ATACACGAAACCGAAAGAAATGTCTGTCGTGACACATTAACCAGCCCTCT
CCGCCTTGGTATCTCACAGCCTCATTCCGCGATGGAATAACTCCCTCATT
TTCGCGTAGCCCACGATGGAAAAGAAGCCTATTCTTGGCAAGTGACCTTG
CCACTTCTCTCTGCGGATGTGCGTGACCTCTGTTCAGATCCGAGATTTGA
GCCAGGAGCTTGAGGAAGCCGGGGGTCTGATGTGAGAGGAAGATGCAGCT
TGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8993:1402..6556-

>mRNA_Ecto-sp13_S_contig8993.20537.1 ID=mRNA_Ecto-sp13_S_contig8993.20537.1|Name=mRNA_Ecto-sp13_S_contig8993.20537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8993:1402..6556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGGAGGTCGAGCGGGCGAGGGCTTGCATACATTCGTTCTACAA
CACGGACGACGTGGCCAGCCGAGAAGAGCGTCGAGAGGTGCGGTCGAGGG
CATCCCTGCAGGCGCTAGACCGCGGGGACTCCGGCTGCGCCATGACGCCG
GTGGACATGGCGAGGGCAATGACCGGGCTGTTGCGAATGCACCAGAGCGA
GTTGGAGATGCAGGAAAGTATTGTGTACGGTCTGGGTTACGAGACTCCCG
CTGAATCCATCACGGGGTACCGGGAGGCGCTGCGGATGCGACCCTACCTG
GATGACCAGTACCGATCCCAGGCACAGGAGATCCGAGATTTGAGCCAGGA
GCTTGAGGAAGCCGGGGGTCTGATGTGA
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