mRNA_Ecto-sp13_S_contig898.20518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig898.20518.1
Unique NamemRNA_Ecto-sp13_S_contig898.20518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Match: D8LFP8_ECTSI (Similar to peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFP8_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 3.000e-140
Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:    1 MATSALQERRKRLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADIKFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVVKPSA 630
            MATSALQERRKRLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPAD+KFRELRANNK IQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVVKPSA
Sbjct:    1 MATSALQERRKRLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADVKFRELRANNKTIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVVKPSA 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Match: A0A835ZG04_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG04_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.130e-53
Identity = 105/209 (50.24%), Postives = 137/209 (65.55%), Query Frame = 1 
Query:    1 MATSALQERRKRLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADIKFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSC-EQSEGSV-GGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVVK 621
            M TS +QE+R+RL+ RVGRH+PCN  + V  F   A+K+++NI+  P + K+RELRA N  +   +L  HGG+EFL LLGFEKI K+GE VYF+ E  +++LTQAK WL ++  +    +   V G +ACA+ V+ V LTSGQTLEGGFY HET+  VY F++SSVVN  E L LR             L M+L DA L PRA L VVK
Sbjct:    1 MVTSDVQEKRRRLLVRVGRHIPCNAPEAVRVFLDAASKMLDNIMKAPEEPKYRELRAANAAVSAKLLQPHGGKEFLHLLGFEKIFKHGEAVYFMTEVDLEYLTQAKQWLQQQAAAAMAMAPAEVPGAQACAECVIQVRLTSGQTLEGGFYAHETVRAVYDFVRSSVVNAEEALLLRAPG--HHSFTADKLDMTLQDAGLAPRAVLQVVK 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Match: A0A6U3RNQ7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RNQ7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 6.460e-19
Identity = 81/294 (27.55%), Postives = 131/294 (44.56%), Query Frame = 1 
Query:   34 RLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADIKFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVN---------GGEDLRLRTTTVPETELGE----QMLPMSLADAKLLPRATLAVVK-PSAXXXXXXXXXXXXXXXXXEQLRLLQENSARKNRDVIAEKEKEEAMAKFRADRVARAAAPQNGDSGVEGDRTILEACSIDVVQ 873
            ++  +  R +P N+   +     +  K+++NIL+ P+  KFR LR  NK+++  +   HG +E ++LLGFE     G +V    E  +  L + + WL E+  +    + +   +ACA+S++ V L  G T    FY  E +  V+ +L+S +++         G  D       + E   GE    + L +SL D  L+PRATL VV  PS                  E  RL +E   R+ R +  E++++E       +RV    A    D       T   A SI  VQ
Sbjct:   12 KITEKCARAIPLNSPSELRQMQTILIKIIDNILNEPSQPKFRSLRLGNKVLRTKLFERHGAKEAITLLGFENQVVEGSLV-LPPEADLGTLNETRAWLEEQFVAALSMQRTTA-QACAESIIQVRLPKGITHRCAFYAQEPLGAVHKYLESCILHQSPDQLADSGENDGGRSAWRLMEHGRGEPFSAESLQISLQDLGLVPRATLVVVMDPSLSSSEPAETAGSTAEGAREARRLREETERRRQRAMKLERQRKEVERAAERERVLSDFAADRDDRRARKTVTNQSADSITGVQ 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Match: A0A7S3UVJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVJ1_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 7.240e-12
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:   55 RHLPCNTIQVVSDFAKVATKVVENILSNPADIKFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVD--HLTQAKGWLAERV 339
            R LPCN++  +  F +++ K++EN++  P++ K+R LR NN  I   ++S HGG EFL LLGF+KI + G  +  + +   D   L   K WL + V
Sbjct:   17 RKLPCNSVLELRMFLQISNKIIENLVQFPSEHKYRTLRWNNTAIHSRIISVHGGLEFLDLLGFKKIKREGVQILEINDCTDDSGRLLALKQWLRDAV 113
[Close]
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Match: A0A6P7FTI1_DIAVI (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FTI1_DIAVI)

HSP 1 Score: 61.2 bits (147), Expect = 2.010e-6
Identity = 28/85 (32.94%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   55 RHLPCNTIQVVSDFAKVATKVVENILSNPADIKFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLT 309
            + L  N+  V  +  ++ TK+ +NI+ NP+D+K R L+ +N  I   +LS  GG+E L L+GFE+++    +  +LA+  +   T
Sbjct:    8 KQLEQNSPAVYQEAIRILTKIADNIIKNPSDLKVRTLQKSNITISSKILSIKGGKECLKLMGFEEVSNYSNISIYLAQTPILQTT 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig898.20518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFP8_ECTSI3.000e-14099.05Similar to peptide-N(4)-(N-acetyl-beta-glucosaminy... [more]
A0A835ZG04_9STRA2.130e-5350.24UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6U3RNQ7_9STRA6.460e-1927.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3UVJ1_HETAK7.240e-1238.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6P7FTI1_DIAVI2.010e-632.94Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig898contigEcto-sp13_S_contig898:1208..9726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1254
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionUBX domain
Ec32 orthologEc-01_001370.1
Cds size1014
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig898.20518.1prot_Ecto-sp13_S_contig898.20518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig898 1208..9486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464170.636318-CDS-Ecto-sp13_S_contig898:1207..13211681464170.636318-CDS-Ecto-sp13_S_contig898:1207..1321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 1208..1321 +
1681464170.6568394-CDS-Ecto-sp13_S_contig898:2757..28911681464170.6568394-CDS-Ecto-sp13_S_contig898:2757..2891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 2758..2891 +
1681464170.6731138-CDS-Ecto-sp13_S_contig898:3149..33031681464170.6731138-CDS-Ecto-sp13_S_contig898:3149..3303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 3150..3303 +
1681464170.6863492-CDS-Ecto-sp13_S_contig898:3926..40271681464170.6863492-CDS-Ecto-sp13_S_contig898:3926..4027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 3927..4027 +
1681464170.697728-CDS-Ecto-sp13_S_contig898:4702..47851681464170.697728-CDS-Ecto-sp13_S_contig898:4702..4785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 4703..4785 +
1681464170.7088153-CDS-Ecto-sp13_S_contig898:5596..56851681464170.7088153-CDS-Ecto-sp13_S_contig898:5596..5685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 5597..5685 +
1681464170.718404-CDS-Ecto-sp13_S_contig898:8731..88001681464170.718404-CDS-Ecto-sp13_S_contig898:8731..8800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 8732..8800 +
1681464170.735605-CDS-Ecto-sp13_S_contig898:9216..94861681464170.735605-CDS-Ecto-sp13_S_contig898:9216..9486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig898 9217..9486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464170.7478569-UTR-Ecto-sp13_S_contig898:9486..97261681464170.7478569-UTR-Ecto-sp13_S_contig898:9486..9726Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig898 9487..9726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig898.20518.1

>prot_Ecto-sp13_S_contig898.20518.1 ID=prot_Ecto-sp13_S_contig898.20518.1|Name=mRNA_Ecto-sp13_S_contig898.20518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=338bp
MATSALQERRKRLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADI
KFRELRANNKIIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVD
HLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKH
ETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPR
ATLAVVKPSAAPPPPKKSRRNESEEAAEQLRLLQENSARKNRDVIAEKEK
EEAMAKFRADRVARAAAPQNGDSGVEGDRTILEACSIDVVQGWQKLMWSL
SFCVAVPWKSVAPHWLFPRRIRLSSTTQGSALQRYAT*
back to top

mRNA from alignment at Ecto-sp13_S_contig898:1208..9726+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig898.20518.1 ID=mRNA_Ecto-sp13_S_contig898.20518.1|Name=mRNA_Ecto-sp13_S_contig898.20518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig898:1208..9726+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACTTCGGCGCTGCAGGAGCGGAGGAAGCGCCTGGTAAACAGGGT
GGGCCGACACCTGCCGTGTAACACCATCCAGGTGGTGTCTGACTTCGCCA
AGGTGGCCACAAAGGTACGAACAGCGGAGAAGGAGTTTTACGCAAACAAC
GCCGCATCAAGCACACCCGTATTCCGCTGCTGCAACCCCGAGCTGACTCT
CTCCCTCTCTGATGCATCGGCATGATTGTAACTTGGTAGACGCCTATTCC
CCTTTCTTAACATCCCGTGCGGGGCGGGAGTTTGCGTTTGTAGCACGAGA
ACTGCTGTGTGGTAGTTGTGCTCGTGAATAGGCCGATCTTGTTTTGAACA
CCACGACCGGCCGACCCACGTTCAACCGTGTTGCAAGTGCAGCACCAGCA
CACAGGAGAGATAACGAGATGACACGTTGCTTGCAAACATCCGTAGCCGC
TGTTGGTTGTTATAACGTAGGCAAAACTTTCTATGTGACGCCCTCATGCT
TGATCATCGATCATATATGGAGCATTGGTACCGGCGATGGGAATGCCGCC
GTCGTATCCCTCATATCCTCAACAGACAACTCTGAGTACTGCTGTACATC
GTACCGGTCTATATGGAGGAACTGGGATTGTCAGACCCACTTGTATTTAT
GTATTTGCCCAGGCCGCGAAAGGCGGTTGGTTCCTTGCTGCAACAAACCA
GACGCGAGTAGCCAGAGAAAGAGCAGAGGAGAGTGGGCGCGTTGTTTCTG
CACAGGCATTGACTTGGTTTCGTGCCCAAAAATGATACTCGAGATGTACA
ATTACTGCCTTAAGTTGCTATCCACAACCGACCGGAGAAAATTCATTCCG
AAGATTACACCGCCGACGAAAAAAAAATAATCACGGGGCCTTCGGTGCTC
GAGAAAGCGTGGCGTGTATCTACTTGATCCCTGGCTGTTCTGGCTGTTCT
TAAAAGGGACCCTGTGAAAACTTCCTGTGTGCCTGTTGTTAAAAGTTAGA
GTTGTCGTTATAGTGATAAAGGTGTGGGCATTATTACGGAATACCTGAGA
ATTGGAACGTTCGTGGTGATCGTAACGTCAACCACCGTGACCTGTTTGAC
CAATGAAAATGCACGTGACAGTCTCGACGAGACGAAGGCGCAATGTGTGT
GTAGAAGCATGGACAGATTGTCGCGCTTTGTGTTGTTGTTGTCGTTGTTT
TTAATTACGCAAGAAGATACGCGTGTATAGAAAGGTTTTCCACGGTCTTC
GTTGGGTATGTTTCAGCCTGACTTACCCAGACCCAACGGATTGCTGGTTT
GTTTACGGTAAGACTGCGCGGGACACCTGTGCCTGTTGGATCCCTCTAAA
ACACCCAGACTCAAGAATATCGTACCCGCACCGTACCAACCCAAAACACC
TCTTGGATATTCGTTCACCGCGTGCAACCCCTCCCCGCCCCTGAACTACT
ACGAAGGTGGTGGCACTCTACCTGCCTAACGCTTGGAATGGAGGTCCGTT
AACCGTGTGCCACCCCGTCTCCGTCCCTTAACTGCTTCCTCGATTTGAAG
GTGGTGGAAAATATCCTCTCCAACCCTGCCGACATTAAGTTCAGGGAGCT
CCGCGCCAATAACAAGATCATCCAGCGGGCGGTGCTCAGCTGCCACGGCG
GCCGAGAGTTCCTGTCCCTGTTGGGCTTCGAAAAGTAAGCTCCCCCCCGG
GAGAGGGGGGTCGACGGAGAATGCTACGTAGTTCGGCACGTACCTCATGC
GATACCACATTGTAGGCATGAAGGAAGGTGCTCTATCTCAAAATGGACTC
TAGGTCAACGGCCAATGTTGTGATCATTGAGAGACTCTTCTGTGTCTTTT
CAATCAATGATTCTTCTTGACGAAGAAACTCGTGGAATCCTCAAGCGATA
GACAGTGCGTACTCCCCCTCCCCCCCCCGCCGCCTGCTCCAGGATCACAA
AGAACGGGGAGGTGGTGTACTTCCTGGCGGAGCCGCACGTGGACCACTTG
ACGCAAGCAAAGGGATGGCTTGCGGAGCGCGTCAAGTCGTGCGAGCAGTC
GGAGGGCTCGGTCGGGGGCCGAGCATGCGCGGACTCAGTGCTGACGGTGA
GGTAGTTTTTCATGCCACTGCTGCGATAATTTTTGACGCCCTTTTCAAGA
GAGAAATGTGTGGGTGAATCCGGTCTTGTCCCTGCTGGTTGATTCACGGG
GTACAGCAGTCTCTTGCGCCGATCCACAGAGCACACCTCTGCTCTCACCT
TCTCGGCGTGTGTGTGTGTTTCCCGTCCAAACCCTCATCCCATCTCAACC
ATCACCTGCCCCAGCCGAATCTCTCCACTTCCACCCCTCTGGTGTGGGCG
GGAAGGGCCTAACGCTAGAGGCGCCCCTCCTCACCTCCCGCAAGCCCCCT
ATGCCCGCGTTCCCTACACCTCGTACTTCGCCTAACGTTGTTTTTTGTTT
GTGCGTATTGCCCCCCCATTGGTCCGGAATTCTCTAGATGTTTCGCGCAC
TTTTCTGGTTGTGTTTGTGCAGGTCTGCCTGCCCCCTGTTTTGCCGACAT
TCCCTCAGTTTACAGGGCGCCTTTTGATGTTTGATTTGTTCGTGCGACTT
TGCCCCCTATTGCCCGGCATGCCCTCAGTTGTTCATGGGATCTTGCTAAT
CTGTCTTGCGTTTTTTTTTCTTCTCCTGCCACCATTGACGCTTTGGGGGG
GCGCGCGGTATCCGCGAAGGTGCTCCTGACTAGCGGACAGACGCTGGAGG
GCGGCTTCTACAAGCATGAGACCATCCACGACGTCTACGCGTTCTTGCAG
TCCAGTGTCGTCAACGGGGGGTGCGTGCGTGCGTCGGGAAATAGTCTTCG
TTTTTCTTCCGGTGTCTCTCTCTACGCGCGAATGATGTACTAGCCATCCG
ATGTAAATTAACTTTTGTTGGAGATACCGGGAATTGTCAGCTGGGAACGC
CGCTTAGTGGAAAACCCGGGCGTGATAATGTAGCTCGTGTCATCGGTTCT
TGTTTGGGGCCGTGTGAGCTTGGTCGTTGCTTCGGCCGTGTGTTCTGCGA
GCGAGAACCTTTTGCATCCGAACCCTTGCACACACACATACCCCCAGGCG
GCGGTGATATAATGTTCCGCGCGTGTTTTGCGCGATGCCTACCGTGACGC
GTGTTGTGTATTGTAGTAGTTTCACGTGCGTTTTTGCCGATCGGCCTGCT
GTACTCTTGTCAGCTTGTCATGCCCGGGTCGACATACCAGCAGGCGAGTG
CTGCGGGGGAGGGCGTGGTATCAGATGTCGTGGGTCGCGAAGACAAGTCG
CCTTGTGGTCGAGGCGAGCACACACAAAACAGCAACGGTACGGGGAATGG
GATGGACGTCAGCTGTGAAAAAAAAAAGACAAGAAAAAGAGTCGTGACAT
AGAACAACACATCGTAGAAACACGTTGCTATGCAGAGCGATAGTACCATT
TGCGTGTGTCCTACCGTACCGTGTCTCGCCGCATGTGTACCCCAGGGAGG
ACTTGCGGCTGCGCACGACAACCGTGCCGGAAACCGAGCTTGGAGAACAA
ATGCTGCCGATGTCTCTGGCAGATGCAAGTGAGAATCAACAAGAACCGAA
CTCGTGCTTGCGAGTGTAAATAGGGTGAAGGATTGCCGACCCCCCCCACA
CACCACCTTTTTTTTTGTGCGTGTCATTGGAACCAAATGTCGCATGTTTG
CGGTGGGAGATGCTCGAAGTTTATCCCCAAACGAACGCGAATGAAGCAAC
CGACCACCTGCTGTGTCTCGTTTCTAGTGGACGACTTGCTGGAACCAACG
GGTTGTTACTGTTCGTGGTTTGTCGCTGTGTGTCCGTCTTGATCAAGTAT
TTTTGTTTTGTAGGCAAGACAACACCGAAATGTTACTGAGCAGGAAACTG
GCTAGCTCTCTTTGTCTGTCTGTCTGTCTGTCTCTCTGTCTCTCTGTCTC
TCTGTCCCTCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTCTCTTCAGTGT
ATCTGTCCATCTCTCTCCCTCCCGCTTTCTCTCTCCGTCCCTCTCTCCCT
CTCTCTCCCCCCTTTTATCTCTCCCACCAACTCATCCCACCCACCGCCCT
TTCCATCCTGTATTTACCTCATGTCCGTTTGTTGTTGTTGCTGGGAGAGT
GGTACTCAGATCAGGACAGCTTCGACGATCGTGGGCGAAAAATCCCGTTC
CCATCCCCCGAACCCCCTCCTCTCCTCCTTTTCGCTGTTCGTGCTCGTCG
ACGCGTGTTTATGTTCCCTCTCGTGACGTTGCGTTCCTCGTGACGTTGCG
TTCCTTCTCGTGACGTCACCACGTTGGGTGCCGTCTTGCCTTCGTTGTGT
TGCTGCTGCGGAATCGTTTTGTCTCCCGTCTTTTGACAGAACTGCTCCCG
AGGGCTACCCTTGCGGTGGTCAAGCCTTCCGCGGCGCCTCCGCCACCGAA
AAAGAGCCGCCGGAACGAGTCAGAAGAGGTGTGTACTGCTGTACGCATAC
ATACGTGACCTGCACCCGCATGTGTTGACTTTTTCTCTCCCCCAAACACT
ACAACACGTTTTTTTTTTGTCGAGGTGCGTAAAGAAGGTGCGACCACCGT
AGAACCCTCTTGTTTTTCTCCTGGAGCTTGTTGCTTGTTTCCTCTCTCTC
CAGGGTAACCAAAAGCGGCAGCGACTACGTAGGCTTTAGCATGGGGTGCT
TCGCGGAGCACCTGGTCTTGATGTCAAGTTCTCCAGCCCCGATATTTTGG
AGCCTGAACCTGGGTACTTGCTGTGTTTTGTGGTGGGGAGTGCCGTAGTA
TGTGTCATGGCACGATGAACACAGTCGTTCAGAGGTTCATGCCCCCGCTG
TTCCCGAATGAGGAGCCGCCGGAGTGAATAAAAAGGAGCGCCCGCCCTGC
ACTCGCATATATGTGTTGACTTTTGTTTTCTCAGGACAATCGATTCTTTT
TGTCAAGGTGCGGTAGCACACATGTTTTTGCGTATTTGTGTGTGTGGTGA
ACGTTGAATGCGTTTAACTCGCACCGTCGCCGTCCCTGGAGATTGGCTGC
CGGAATGATGAATCGAAAATCTCCATTTTTTCTTCGGAAATCTCCGTTTT
CTTCGAAATCATCGTCTTCCGCCGGAAAACTGGCATTTGTCGACCATGTA
TACATATCTCCCCACCTGAGCCATGCAAGAGCCACCGGAGAGAATCAAAA
GAAGGCCGCCATCTTATCGTGTCCAGAAAGATCAGCGATCATTTTATTAG
CACTGAGAATCATGAGGTAGCGTGGTCAAGTGGCCGAGCGGTCTAAGGCG
CTAGTTTAAGGCACTAGTTCGAAAGAGCGTGAGTTCGAATCTCACCTTGA
TCAATTTTTGTCGAAGTGCTTCGGTGCCAATCGAAACTAAATCTGACCGC
ACTGCACGTGACAAACGGCACAACCCCAATGGAAATGTCTAAAACCACAG
CCATGTGATGAGCAATTTGCAACCCTGGTCACATGGTCACAGAATAACCC
CCCCCGCTTAATTTGAGTCGAAAATATACATGCACAGACCCCCCTCATCA
CACCGGTGTGGTAGGCCGTGACTACATATGTACAAGAGGGCGCAACCTTT
CGCTAAATAGCTATGGCGACCGACAAAACCGCGGAGATGAACGAAGCACA
CATCATTGCTGAAAGCATCGCGGCTCAGACTGCAGTTAGTCAGACTCCAG
CGGCGGCGGCGCGCCCAATTACGTCATATTTCCTGTGACCCCTGAAACTC
CCCCAGCACCGGCTGCGCCTGCCACCGCCCGTGCTGCTGAGGCCCGCACA
TGATTGGTGTAACGCTTTCTCACTCCGTGATTAACACACACCCTCGTATC
ACCCCTCCTGTAGGTCGGGTCGTGTGGGCGCACTTCATCCCACAGGTAAC
ATTATCACACCCCATCTTCATCACACCCCCTTCGGAGTGGAGTCCTGTGA
ATGCAGCTTATCTCACGGGTCACAAAAGATATCACACCCCCTACAGATTA
CCACACCCGCGTTGTCATTTTTGGACTTCCAAAGTTGTTACCACACGGGT
GTGATATCTTTTGTGTCACCTACGTTTATTACACCGTGTCCGGAACAACC
CGGCATCTTGTCAGCACCATTTCGGGCGTGCGGTCACACTTGGTCAGGTG
GCCGAGCGGGCTTAGGCATTACTTGAAAATAACGTAAGTTCGAACGCCAC
CTTCATCATTTTTGTCGACATAATTTTGTGTAAAATGCAACGAAAATATC
GTCCGGCGAAACCTGGTATTTCAACAGTATCACTCCGAGAGTGGTTTGCC
CCATGGTCAAGTGGCCGAGCGGTCTAAAGCGCTAGTTGAAGGCACTTGTT
CGAAAGAGCGTGAGTTCGTGATGAGATAGTACTGTACGGGAGTAGCAAAT
GGAAAAATACAAATGGCTGCATTCCATGGCCACCGGTGCAAAAAAATACG
ACTGCACCATCAAGAGCGTGTTGACAGACACTGTGTTCGTTTTTCCGAAA
GGAAAATTGCATATTTTTGAGTTGGATTCTTGAACCTTACAAGAAACCGC
CCAATATCCTGTCGGGAAAAATCAGCGTCCATTCACTGTCACGCCGAGTA
CCTGGGTAGACATGGTCAAGTGGCCGAGCGGTCTAAGGCGCTAGTTTAAG
GCACTAGTTCGAAAGAGCGTGAGTTCGAATCTCACCTTGATCAGATTTTG
TCAACGTAAGGTGTGTTGTTGGAAGGCGCCTGATCCGCGTCGTCCGACAT
TTTATTTCTTAATTTTCATTAGACAGGAAACCCACGAGAAAACGACTTCG
CTTGCATTGCGTGGAGGTCCTGTTTTCTGCCTGCATAGTTGACGCCGTCG
TTCATGTTGGACGTTAGATCGACACGCGACTAAGATGTATACTTCAAACA
TACGTGCCTCGTCGCTCGATGTAGCGCCCTTTGTATACATTGCACGTGTC
CTACACTGCTGTAGTGATAATGGGATCGGGATCTGGTAGTCTCGACGTCC
CACATGTACCGTTGAAACTGGCGGATCGAATGCACGGGATGTGCGGGAAG
AACCGAAAGGTAAAAAGAGGGACGATGAGCGAGTAGCTGCTTGTTTCCGG
TCTAGAAGGTCCTGATGCCCTGCCAGAGAAAAACGACCAAAAGCAGTACG
CCAACGAGTGGAAGACATTTCGATGTACAGTCGAATCTCGGGTAAGGACA
CAGTCACACGTGTTTTTTTTTTGCGTAGAAAAGTGTCCTTTAGCCGGGGA
AGCGTCCTTAAGGCTGATACCCCCTTCTTATGTTGTACGTTCTGCGAGCC
ACCATGCCTGTAATATTCTTTTTGTCCTCGTTCGAGGGAGTTCCCTTGGT
GTCCCTAAGAGAGGCACTACTGTACATGTTCACCCAGTATGCACCCACCA
TGAAAAAACCTCCTGCTACCCCTATGTGTGTAGTTTGATTGAGGGTCTAA
CCGGTTTCGGAAAAGACTTTGTACGGCTGCAATTCGGAAGTTCGTTGTTT
GTCTTGGCTTGGTGTTTGCGGCAGGCAGCTGAGCAGCTACGATTGCTGCA
GGAGAACAGCGCGAGGAAGAACCGGGATGTCATCGCAGAAAAGGTACAGA
AGTTCTTCTTACTACCTGACTGACGTGTCTATGCGGCGTCGCAGCAGTAC
ACGTCTGTCTTGTTTTTTATTTTTCGCGTCGATCGCGCTAACCGGCTAAC
CAATGAAAGGACGTCAGTCTCAGTGCGGTGGAAAGCACAGAATGCTTGTA
AAGCCCACGTGCGTGTACACGCGCGTTTGCGTTTGACGTATTAGGGTGTC
ACCTGTAGTATCCTCGTGGTGTTTATTTTGAGGGTCGGTCCTGTTTCCAT
CTCTTTTCGTTGTAACGATACAACGCACAGACGTGCGTGGATTCCGACCA
CAATGCCATTAACCCTACCAACAGCTATTAATTTTACTGCATTTCTTCCT
TCGATCGCAATACCCGCTCGTTGCGTATGTACGTGCACCCATCGTATGTA
CACCCGCAGGAGAAAGAGGAAGCAATGGCCAAATTCAGGGCGGATCGGGT
GGCGCGCGCAGCGGCACCACAGAATGGCGACAGCGGGGTGGAAGGTGATC
GGACGATTCTTGAAGCATGTAGCATCGATGTTGTGCAAGGTTGGCAGAAG
TTGATGTGGTCGTTGTCGTTCTGTGTTGCTGTTCCGTGGAAGTCAGTGGC
CCCTCACTGGCTGTTCCCTCGACGAATACGCTTGTCGAGCACAACCCAAG
GGTCAGCGTTACAGAGGTACGCAACTTGAGTTGTAGCGGCTAGAGTAGGA
ACTACAATTCAGGCGTCGTGAAAAAACTGCTTCGACAACAAACAGCAGGT
GGTAGAACCTGCGTCACAACGGTGCCGGACGTTTGAGTCCTTCACAATGT
CGGAAGGTCCCGAGTTCTCTTCTGACACACTTCGATTTGAAACAAAATCG
TTAGCTGACGAATACTACTTCTTTCAGGCCCTCCTCCCTCACCTGCTGGT
AACAAGCCCCGTTCCAAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig898:1208..9726+

>mRNA_Ecto-sp13_S_contig898.20518.1 ID=mRNA_Ecto-sp13_S_contig898.20518.1|Name=mRNA_Ecto-sp13_S_contig898.20518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig898:1208..9726+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACTTCGGCGCTGCAGGAGCGGAGGAAGCGCCTGGTAAACAGGGT
GGGCCGACACCTGCCGTGTAACACCATCCAGGTGGTGTCTGACTTCGCCA
AGGTGGCCACAAAGGTGGTGGAAAATATCCTCTCCAACCCTGCCGACATT
AAGTTCAGGGAGCTCCGCGCCAATAACAAGATCATCCAGCGGGCGGTGCT
CAGCTGCCACGGCGGCCGAGAGTTCCTGTCCCTGTTGGGCTTCGAAAAGA
TCACAAAGAACGGGGAGGTGGTGTACTTCCTGGCGGAGCCGCACGTGGAC
CACTTGACGCAAGCAAAGGGATGGCTTGCGGAGCGCGTCAAGTCGTGCGA
GCAGTCGGAGGGCTCGGTCGGGGGCCGAGCATGCGCGGACTCAGTGCTGA
CGGTGCTCCTGACTAGCGGACAGACGCTGGAGGGCGGCTTCTACAAGCAT
GAGACCATCCACGACGTCTACGCGTTCTTGCAGTCCAGTGTCGTCAACGG
GGGGGAGGACTTGCGGCTGCGCACGACAACCGTGCCGGAAACCGAGCTTG
GAGAACAAATGCTGCCGATGTCTCTGGCAGATGCAAAACTGCTCCCGAGG
GCTACCCTTGCGGTGGTCAAGCCTTCCGCGGCGCCTCCGCCACCGAAAAA
GAGCCGCCGGAACGAGTCAGAAGAGGCAGCTGAGCAGCTACGATTGCTGC
AGGAGAACAGCGCGAGGAAGAACCGGGATGTCATCGCAGAAAAGGAGAAA
GAGGAAGCAATGGCCAAATTCAGGGCGGATCGGGTGGCGCGCGCAGCGGC
ACCACAGAATGGCGACAGCGGGGTGGAAGGTGATCGGACGATTCTTGAAG
CATGTAGCATCGATGTTGTGCAAGGTTGGCAGAAGTTGATGTGGTCGTTG
TCGTTCTGTGTTGCTGTTCCGTGGAAGTCAGTGGCCCCTCACTGGCTGTT
CCCTCGACGAATACGCTTGTCGAGCACAACCCAAGGGTCAGCGTTACAGA
GGTACGCAACTTGA
back to top