mRNA_Ecto-sp13_S_contig896.20497.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig896.20497.1
Unique NamemRNA_Ecto-sp13_S_contig896.20497.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: D8LFD1_ECTSI (PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD1_ECTSI)

HSP 1 Score: 437 bits (1123), Expect = 2.790e-151
Identity = 229/250 (91.60%), Postives = 235/250 (94.00%), Query Frame = 1
Query:    1 MRDAWFRAGVGAQTLAVAHCWLLYPGTGKRACGPLTNININ----ISNGGARSVALSSPDRIRSLSQGSGGGGLCSALGPAMSEGQAVDEVDSSERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGV 738
            MRDAWFRAGVGAQTLAVAHCWLLYPGTG+  CGPLTN+N      I NGGAR++ALSSPDRIRSLSQGSGGG LCSALG AMSEGQA+DEVDSS RPRVLGLGSAGVDFIAAVDRYPTADEKV+TQ LQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLD VAAVHLDSRHTPAAVALAKLANER V
Sbjct:    1 MRDAWFRAGVGAQTLAVAHCWLLYPGTGR--CGPLTNVNXXXXXXIFNGGARNLALSSPDRIRSLSQGSGGGRLCSALGTAMSEGQALDEVDSSGRPRVLGLGSAGVDFIAAVDRYPTADEKVQTQSLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDVVAAVHLDSRHTPAAVALAKLANERSV 248          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: A0A6U4SHY2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4SHY2_HEMAN)

HSP 1 Score: 236 bits (603), Expect = 7.640e-72
Identity = 129/269 (47.96%), Postives = 173/269 (64.31%), Query Frame = 1
Query:  163 PDRIRSLSQGSGGGGLCSALGPAMSEGQAVDEVDSSERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVVTREKDQP 969
            P R  ++SQ  GGGGL + +  A    +     D  +  ++LGLG A VDFIA VD YP  D+K+R+  L V+GGGN  N+L+A  RLG++  L TK+G D NG LI + L  +GVD +  +      S FTY++VD    TRTC+HTP  ED+LP+EI  D+LDGV+ VHLD R+T AA  LA++ANE  VPV+LD EK+RP ++ +LPLADY+I N  +PQ F  + G    E  +  LLEQGRA+ V TTLGA+G  ++ R  D P
Sbjct:   35 PRRAVAVSQ--GGGGLLTMMTGAKKAAEPPAVPDHLKGKKLLGLGIAAVDFIATVDAYPKPDDKIRSTSLSVMGGGNAANSLTACRRLGVECSLLTKLGQDDNGDLIRKELNRDGVDTTLCVTKAGLDSPFTYILVDSSTQTRTCIHTPIQEDLLPDEIPKDVLDGVSVVHLDGRNTLAAARLAEMANEAKVPVLLDIEKERPDIEKVLPLADYIITNTQYPQIF--KEGASTEEGMVA-LLEQGRAKWVITTLGADGSQMMRRTSDDP 298          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: L1K4H8_GUITC (PfkB domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K4H8_GUITC)

HSP 1 Score: 229 bits (584), Expect = 1.350e-69
Identity = 113/228 (49.56%), Postives = 154/228 (67.54%), Query Frame = 1
Query:  280 RVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVVTREKD 963
            RVLGLG A VDFIA VD +P  D+K+R+    + GGGNC NTL+   RLG++A LATK+G DANG  I+  L ++GV  S  I  +   S FTY+IVD    TRTC+HTP  E++L EE+  + LDGV+ +HLDSR+T A++ LAKLA ER +PVVLDAEKDRP++++LLPLAD ++ N  +P  F     V G    ++ LL+ G A+++ +T G  GC  + R +D
Sbjct:   19 RVLGLGVAAVDFIATVDHFPQPDDKIRSTSFSMQGGGNCANTLTCVRRLGVEAILATKLGKDANGNSIISELNDDGVSTSLCICKEGLDSPFTYIIVDDATHTRTCIHTPIQEELLEEEVAAEWLDGVSLLHLDSRNTRASIKLAKLARERSIPVVLDAEKDRPYMRELLPLADVIVTNSKYPLVFDSAGFVQG----MQALLQLGSAKMIISTQGDRGCTALVRGED 242          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: A0A7S3ENN4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENN4_9RHOD)

HSP 1 Score: 228 bits (581), Expect = 4.540e-69
Identity = 115/250 (46.00%), Postives = 163/250 (65.20%), Query Frame = 1
Query:  220 LGPAMSEGQAVDEVDSS-----ERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVVTR 954
            + P  S+  AV  VD++        +V+GLG+A +D +A+VD +P  D+K+RT   +V GGGNC NTL+A  RLG+   + TK+G D  G+ I   L+ +GVD S VIV     S FTYV+ ++ GGTRTC+HTP   ++LP E+ P+ LD    +HLD RHT AA+ +AKLA ERGVP+ LD EKDRP +++LLPLAD++I N+ +P  F    G D +   +  LL  GRA+ V TTLGA+G +++ +
Sbjct:    5 MSPGRSKPVAVKMVDNAVPTELRSLKVVGLGAAAIDLLASVDTFPNPDDKIRTVSFEVAGGGNCANTLTAVRRLGIPCSILTKIGDDGTGKQITSELDGDGVDTSNVIVQRNMNSPFTYVLTERAGGTRTCIHTPAESELLPSEVKPEWLDEADHLHLDGRHTQAAIEMAKLAIERGVPISLDVEKDRPHIRELLPLADFIITNQRYPTVF----GEDVYRG-MHTLLRLGRAKFVVTTLGADGSLLMCK 249          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: W7TU72_9STRA (Pfkb-like carbohydrate kinase family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU72_9STRA)

HSP 1 Score: 229 bits (585), Expect = 4.850e-69
Identity = 120/228 (52.63%), Postives = 158/228 (69.30%), Query Frame = 1
Query:  265 SSERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVV 948
            S + P+VLG+G  GVD +A V+ YP AD K+RT   ++ GGGN GNTL+   RLG+   + TKVG+DA G +IL+    +G+D   VI      S FTYVIVD  G TRTCLHTP +ED+  +EI P +LDGV  +HLD R+T AA+ LA+LAN RG+PV+LDAEKDRP L++L+PL D++  N  FP+AFTG       E  + +LL+ GRARLV TTLGA+G +V+
Sbjct:   49 SVKPPKVLGMGITGVDLLAYVETYPAADAKIRTSDFKIQGGGNAGNTLTGLCRLGVRTEILTKVGNDAYGSMILEEFAIDGLDTRHVIRKAGISSPFTYVIVDMAGQTRTCLHTP-SEDLTEDEINPAVLDGVDFLHLDGRNTLAAIRLAQLANARGIPVMLDAEKDRPHLRELVPLCDFLATNAVFPKAFTGAAST---EEGMARLLDMGRARLVFTTLGAKGSMVM 272          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: R7QG38_CHOCR (PfkB domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG38_CHOCR)

HSP 1 Score: 221 bits (563), Expect = 7.540e-66
Identity = 112/229 (48.91%), Postives = 151/229 (65.94%), Query Frame = 1
Query:  280 RVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVVTREKDQ 966
            RVLGLG +GVD +A VD YP  D+KVRT  + VLGGGN  NTL+A  RLG+   L +KVG D  G   +Q L+ +GVD S V+  +   ++FTYVIVD +  TRTC+ T   ED+L  EI   +LD  + V LD RHT AA+ LAK A  RG+P++LD E++RP+++DLLP ADY++ N  +P  F+   G  G  +A+  LLE   A++V TTLG+ G I+V RE D+
Sbjct:   60 RVLGLGMSGVDILATVDGYPKPDDKVRTTSVSVLGGGNTANTLTAVRRLGMPCALVSKVGKDMYGSAAIQELQGDGVDTSLVLAKEGVNTSFTYVIVDTKNDTRTCISTASNEDLLVSEIDESMLDNASLVVLDGRHTLAALQLAKFAKNRGIPILLDVERERPYIRDLLPYADYIVTNSVYPFVFSP--GATGKVDAMEMLLEACDAKMVITTLGSSGSIMVQRENDR 286          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: A0A7S1T7S5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7S5_9RHOD)

HSP 1 Score: 212 bits (539), Expect = 6.760e-62
Identity = 105/227 (46.26%), Postives = 147/227 (64.76%), Query Frame = 1
Query:  274 RPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGRARLVATTLGAEGCIVVTR 954
            RP VLGLG+AG+DF+A V  +P  D K+RT   ++LGGGNC NTL+  SRL + + L +K G D NG  I   LE +GV+   ++      S FTYVIVD +  TRTC+HTP TED+L  ++ P++LDGV  VHLD RHT AA+ +A+ A +R +PV LD E+DRP ++DL+PL D++  NR +P  F          + ++ LL  GRA  V TTLG++G  ++ +
Sbjct:   85 RPHVLGLGTAGLDFLAVVSSFPQPDTKIRTSEFKMLGGGNCANTLTGLSRLQIASSLVSKCGDDVNGNQIAAELEADGVNTRYLVRKAGMYSPFTYVIVDAQENTRTCIHTPATEDLLLSDLAPEMLDGVDLVHLDGRHTTAAIQMAQWAVDRAIPVALDVERDRPGIRDLIPLVDFIFTNRQYPGIFAPTEAT--LTDQMQALLRCGRATSVTTTLGSDGAALLCK 309          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: M1V792_CYAM1 (Similar to ketohexokinase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V792_CYAM1)

HSP 1 Score: 211 bits (538), Expect = 2.550e-61
Identity = 115/244 (47.13%), Postives = 156/244 (63.93%), Query Frame = 1
Query:  241 GQAVDEVDSSERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEIT--PDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHE----NAIRQLLEQGRARLVATTLGAEGCIVVTR 954
            G  +D    +  P VLGLG+  +D++A V+RYP  DEK+R+Q L + GGGN  NTL+A +RLG+   LATK+G DA GR IL  L+ EGVD S V +     S  TYVIVD    TRTC+HTP  E++L  ++     L + VA VHLDSRHT AA+ALA+ A +RG+PVVLD EKDRP   DL+ LADY+I N  +P  F+ + G+  +     + +  +++ GRA    +T GAEG ++V R
Sbjct:   89 GVRMDHRKPTSGPVVLGLGATALDYLATVERYPQPDEKIRSQSLTIQGGGNVANTLTALARLGVATRLATKLGDDAIGRDILAELQHEGVDTSFVAIKTNMNSPITYVIVDASTRTRTCIHTPAAEELLASDVVNRDALWERVALVHLDSRHTSAALALAREAVQRGIPVVLDIEKDRPHALDLVALADYIITNATYPLHFSAQPGMSANRLTALSGLVAIMDYGRAAFAISTQGAEGSLMVRR 332          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: A0A5J4Z8Y0_PORPP (Ribokinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8Y0_PORPP)

HSP 1 Score: 209 bits (531), Expect = 1.240e-60
Identity = 110/225 (48.89%), Postives = 149/225 (66.22%), Query Frame = 1
Query:  283 VLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQ-GRARLVATTLGAEGCIVVTR 954
            VL LG+  VDFIA V ++P  D+KVRT+ L VLGGGN  NT +  +RLG      ++VG+DANG+  L  L  EG+DVS V  S    + FTYVIVD++  TRTC+HTP   ++ P+++   +LDG++ VHLD RHT AA+ LAK AN RG+PVVLD EKDRP +++LLPL DY++ N  +P  F+      G  +AI +LLE   R + V TT GAEG  ++ +
Sbjct:   83 VLVLGAVCVDFIARVQQFPQPDDKVRTESLDVLGGGNAANTATCLARLGAQVRFVSQVGTDANGQGCLDELAAEGIDVSYVCRSAQVDTPFTYVIVDEQTQTRTCIHTPSALELGPDQLDESMLDGISLVHLDGRHTLAAIQLAKWANARGIPVVLDVEKDRPHIRELLPLVDYIVTNAKYPLLFSPDSL--GRRDAISKLLESCERVKFVLTTNGAEGSTMMRK 305          
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Match: A0A7J7IJF7_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJF7_9RHOD)

HSP 1 Score: 208 bits (530), Expect = 4.680e-60
Identity = 112/238 (47.06%), Postives = 155/238 (65.13%), Query Frame = 1
Query:  265 SSERPRVLGLGSAGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEIT--PDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVLDAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQ----LLEQGRARLVATTLGAEGCIVVTREK 960
            +++ P VLGLG+  +D++A VDRYP  DEK+R++   + GGGN  NTL+A +RLG++  L TK+G DA GR IL  LE EGVD S V +     S  TYVIVD+   TRTC+HTP  E++   +++    L + VA V LDSRHT AA+ALAK A  RG+P++LD EKDRP+  +LL LADY++ N  +P  F G+ G   H  +I      +LE GRA+ V  T G EG ++V +++
Sbjct:   98 AADTPVVLGLGATAIDYLATVDRYPQPDEKIRSRSFTIQGGGNVANTLTALARLGVETRLLTKLGDDAIGRDILADLESEGVDTSFVAIRSNMNSPITYVIVDESTRTRTCIHTPAAEELTAADVSNCEALWNRVALVLLDSRHTLAALALAKEAIARGIPIMLDIEKDRPYALELLSLADYIVTNATYPLKFKGQPGETSHHLSILTGLVAMLEYGRAQFVIGTQGEEGSLMVQQKR 335          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig896.20497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD1_ECTSI2.790e-15191.60PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus s... [more]
A0A6U4SHY2_HEMAN7.640e-7247.96Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1K4H8_GUITC1.350e-6949.56PfkB domain-containing protein n=2 Tax=Guillardia ... [more]
A0A7S3ENN4_9RHOD4.540e-6946.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
W7TU72_9STRA4.850e-6952.63Pfkb-like carbohydrate kinase family protein n=2 T... [more]
R7QG38_CHOCR7.540e-6648.91PfkB domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S1T7S5_9RHOD6.760e-6246.26Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M1V792_CYAM12.550e-6147.13Similar to ketohexokinase n=1 Tax=Cyanidioschyzon ... [more]
A0A5J4Z8Y0_PORPP1.240e-6048.89Ribokinase n=1 Tax=Porphyridium purpureum TaxID=35... [more]
A0A7J7IJF7_9RHOD4.680e-6047.06Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig896contigEcto-sp13_S_contig896:16014..20725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score441.4
Seed ortholog evalue3.6e-121
Seed eggNOG ortholog2880.D8LFD1
Model size990
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Belongs to the carbohydrate kinase PfkB family
EggNOG OGsKOG2947@1,KOG2947@2759
Ec32 ortholog descriptionPfkB-type carbohydrate kinase
Ec32 orthologEc-07_005840.1
Cds size990
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig896.20497.1prot_Ecto-sp13_S_contig896.20497.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig896 16014..20725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464168.732695-CDS-Ecto-sp13_S_contig896:16013..161051681464168.732695-CDS-Ecto-sp13_S_contig896:16013..16105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 16014..16105 +
1681464168.7450957-CDS-Ecto-sp13_S_contig896:16585..168251681464168.7450957-CDS-Ecto-sp13_S_contig896:16585..16825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 16586..16825 +
1681464168.7590477-CDS-Ecto-sp13_S_contig896:17273..173541681464168.7590477-CDS-Ecto-sp13_S_contig896:17273..17354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 17274..17354 +
1681464168.7760725-CDS-Ecto-sp13_S_contig896:17850..180561681464168.7760725-CDS-Ecto-sp13_S_contig896:17850..18056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 17851..18056 +
1681464168.787807-CDS-Ecto-sp13_S_contig896:18301..184131681464168.787807-CDS-Ecto-sp13_S_contig896:18301..18413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 18302..18413 +
1681464168.80763-CDS-Ecto-sp13_S_contig896:19063..191861681464168.80763-CDS-Ecto-sp13_S_contig896:19063..19186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 19064..19186 +
1681464168.821457-CDS-Ecto-sp13_S_contig896:20074..201731681464168.821457-CDS-Ecto-sp13_S_contig896:20074..20173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 20075..20173 +
1681464168.8324745-CDS-Ecto-sp13_S_contig896:20688..207251681464168.8324745-CDS-Ecto-sp13_S_contig896:20688..20725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig896 20689..20725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig896.20497.1

>prot_Ecto-sp13_S_contig896.20497.1 ID=prot_Ecto-sp13_S_contig896.20497.1|Name=mRNA_Ecto-sp13_S_contig896.20497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=330bp
MRDAWFRAGVGAQTLAVAHCWLLYPGTGKRACGPLTNININISNGGARSV
ALSSPDRIRSLSQGSGGGGLCSALGPAMSEGQAVDEVDSSERPRVLGLGS
AGVDFIAAVDRYPTADEKVRTQFLQVLGGGNCGNTLSAASRLGLDACLAT
KVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCL
HTPQTEDILPEEITPDLLDGVAAVHLDSRHTPAAVALAKLANERGVPVVL
DAEKDRPFLKDLLPLADYVICNRNFPQAFTGRCGVDGHENAIRQLLEQGR
ARLVATTLGAEGCIVVTREKDQPWRGYGDF
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mRNA from alignment at Ecto-sp13_S_contig896:16014..20725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig896.20497.1 ID=mRNA_Ecto-sp13_S_contig896.20497.1|Name=mRNA_Ecto-sp13_S_contig896.20497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4712bp|location=Sequence derived from alignment at Ecto-sp13_S_contig896:16014..20725+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACGCGTGGTTTCGAGCAGGCGTTGGAGCGCAGACTTTGGCTGT TGCCCACTGCTGGCTGCTCTACCCTGGCACAGGCAAGAGAGCGTACTTCC GTCAAAATCCACAAACTCTATCGAGCTCAATGCATACAGCAGACCAGCGA TCGCATTGATTCATCATGCAGTGTTTCGGTAGAGAGGGCGTGCGGGAGTT GGGAGGGAGAAGGGGTGTCACCATGCTGCTGCTTTCCACGCTGCGACTAG TTACCCGATAGCAGCCTGCGTGTTTTGGTGCCGCCTTCATGCAGCACAAT TCATGATACCATGTCGGAGCAACGCATTCGTGTTGCTTGCTTGGACTAAT AGTATGTGCAAGTAAAATCGACTGTCTACTGTCTGCTCACAGCAAAATGT TGATCACGTCTGTTGTGTGTACACCTACGCTGGACGTCTGCTACTCTCCC ACCTTGAATAACGTCATGCGTCTTTGTGTTGTTTTCAAGGGCCAAGCCCA TCAAACGCTCCTAAAAGCTACTGACGCAACACGTCACGTCGTACGGTGCG GACGATGCATTCCCTCAGGCAGGTGTGGACCTCTGACCAACATCAACATC AACATCTCCAACGGTGGGGCTCGCAGCGTTGCATTATCATCGCCTGACCG TATCAGGAGCTTGAGCCAGGGAAGCGGCGGTGGTGGGCTTTGCTCCGCTC TCGGTCCCGCCATGTCCGAGGGCCAGGCAGTAGACGAAGTCGACAGCAGC GAGCGTCCGCGTGTGTTGGGTCTTGGATCCGCGGGCGTTGACTTCATTGC CGCAGTCGACAGGTTACATGCAAACATGCGTGCATGAATGGCTCAGGGGT TGGAAGGGCGGGAGATGGTTCGGAAAGCGAGTTGAAAAACGTGCTTCTGA TGACACCTCAAGAGCAGAATCTACAGATTTGCTCCAGCCGCTACTCGAAA GCATGAAGTATTTTTCTAGGAAAGCGAAACACGTGTAGAGCTCCGCTTTT TCAATACCTGGAGGAAGCATATCGATAGACTTCCCGAATCTCACGAATGT TCGTGCCGCACGTGTACATGGTGGTGGCTTCCGGCCAATACAGTGATGTC GACTATTTCTCGCCGTTGTGAGGGCTGATCGTGGTTACAGTAGCTCACAA ATAACGGATTTCGCCCATTTTGATTCCCGTCTTGTCCTCAATGCGTCCCA GAGCAACTACTTTTTGCCCTCCGTACGCGCATGGCGTATGTGGTGAAACG GCACATACAGGTACCCGACGGCGGACGAGAAGGTTCGAACACAATTTCTT CAGGTCCTGGGGGGAGGGAACTGCGGCAACACCCTTTCCGCGTGAGTGTA TCATGGTATCAACGGGCCAACTGTCGTGCTGGGTAGTATTCCGTTGGATG AGGACAAAGTTTACAGATGGGGGCATAGGAGCTGCTGCAGTCCACCTCCT GTCGACTCGTGGGAGGGTGGACTGGGGCTCACAGCTCATGCATCTCGCCG CATGCCAGTCCTTGATTTCATGCCATCCTGATCTGGGTTCACCCCAATAG AATAGTGAGCTCGAGCCCTGGCGGAGTCTTGGAGACGTCGCTGTCATTGC CAGGACCCGTTGCAGCCTTGAGGGGCGACCTTCGCCTGTCCAACCTGTGA TAATGCCATTGCCCTAGTTTCCTATTCGGGCGCCTGTTTTGAGGGCCTTC AGATGTCGTCGTGAGGTCAGCGAGATCCCTGAGCGTTATATAGTTCTGAG ACGGCGCGGAACGTCGCCCTATCGCAATCCATCGCGTTCCCCGACGCGTG CCGTGCTCAATATCGTTTGCGCGTCTGGACCGTTCAGAGCGAGTAGGCTC GGCTTGGACGCATGCCTGGCTACCAAGGTCGGCTCCGACGCGAACGGCAG GCTGATCCTGCAAGGTTTGGAGGAGGAAGGTGTGGACGTTTCCCGCGTCA TCGTGAGCGATGCCACTCCCTCGGCCTTCACGTACGTCATCGTGGACAAG GAGGGGGGCACCAGGACTTGCCTGCACACCCCGCAGACGGAAGGTGAGGT GCCTATCTACATGTCTCCTCTCACTGAACCCCGGGTTTGTTTTTGAAAGG ACAGCGCCGAAGCAGTGACTCATTCGCGGTCGCTAAGGCGTGAAGCCCTA CCGGGGTAGGTAGGTTAGTTGCACCCGGCAGGTTTCCCCTCAGAGTGATT GCCACTCATCCAACACTCTCCTATGCAAGTCGAGCAACGCACATACGTGA TCGACACGGAGATTTGTCGTGACGTTTTTCGGCGGCAGATATTCTTCCGG AAGAAATTACGCCGGACCTGCTGGACGGGGTTGCTGCGGTGCACCTCGAT TCAAGGCACACCCCGGCGGCCGTCGCCTTGGCCAAGCTGGCCAACGAACG GTCTGTGTGGGCTCTGCCCGAAGAAAGTGTTTTCTTGGCGGTGTTGGCGG TGGACGTACATCCAATAAACGCTCGACGTTCGTTGATGGCGCACTGTTGT TGCGTTCGCATTAGAGCGACTGCATGTGATGGACTGAGTCGACCGGGTGG ATCGAGCGGGCCAAGAGGATGCTCTCGCAAATCGCCATGCTCAGCCATTT TTTTTTTGTTTCCGTGTCCGTAACGGCTCTTTCAAGCGTCGGATGTTTCC ACCAATAGTTCGTGAATTGTCATCCAACGGGTGCGTTCAGGCGACTGTTG GAGTTTGAACTTGGGCGAGGGAACAAACTTATGTTGCCAACGCTCCACTC TCGAGGCTTGTCGAAAGCTTCCAGGCCTGAACGTTGGCCGAGTTGAAGGT TTCGTTTGAAAGACGCATAGAAGAACCACAACCGCATTTGTTTCGGTAGA GAGAAGCCCTGCTGCTCCTCCGTAAATACCACGTGTGTGTACGGCACCCC CGGTAGCCCGTGTCCCGTTCGCATAAGCCCGTTGGCGGCAATGATCCTCA TATCGGGCCTCATCTCCCACACGTTCAGCTCCATTCCCCCGCGACTTCCA CGTTTGTTGCGCTCATCACGTTTCACGGTTCTACGACGCTCTTTCTCAAG AGGCGTCCCGGTGGTTCTCGACGCAGAGAAGGACCGACCGTTTCTAAAGG ACCTCCTCCCGTTGGCGGACTACGTCATTTGCAACAGAAATTTCCCCCAG GCTTTCACCGGCAGGTGCGGGGTGTACACCATTGCTTTACAAACGCGGTT GTCAGCTGGGGCATGATGTTGCTGCGCGGCATGACTTCGCGCAGAGAGAA ACGCGCACGTTTCCATTCTGACTCTCTCGCTTTTTGTTTTTTCGCCAAGA AGGCTTTCGTGGGTTGACTGAGCCCCTCGGCTTTTCCTTTCTTATGGTTC TAGCTTGTGTTGAAATATTTCGATCCGTTTCGTGTTTTTTTGGTCGCCAA TGAATCCAACACAACAGTGCGGTAGCACGGCGAATAAGAGCAAGGTCAAC TCACGACACATACGTCTCTCCCCGGACGTCGGCGTGAAGTCTGCAGTGCT CCAGCAGCGGAGGGTGTGTGCGTCACTCTTGTGTGTCTGCTCGTACTCCG CACTGCCGAATGTTTTTTGGCGTACTTGAACCGGCCTTTTGATCGACCCG CTAGCAAGAGATAACGTCCGGCTAGCAAGTGATAATGTTCCACATCAACC GCAACGCTGCACCCGTCGATGCTTGTCCGAAAACTAGGGTATTTCGTGGT AGGTGTGGAGTTTGTTCGTCGCCATGGGCGCTTGTTGATTCGACCGTGTT GGACGCGAGTCGCGGTGCCCTCGTTCAGACTACAGTGCTCAGGAGCTTCA TCGCATAGTGTAACTAGTCGATGCAGTGAGCACAATGCACCCGCGCGGCA ATCTGAAGGAGAATCCCTAGAGTCGTTCGATATGCTGTCCCGGCGTGAGA GGTCAAGTGTCGTTTGGCCGAAGAAAATGTTTGGCTAGCCCCGGGTGTGT CCTTTGTCCGTGGCCCTCGCCTCCCCAGCCGCACGATGACGCCTGGTCCC GTTTTTCCCGCCCCCGCCAAGTTCCCAATTTTCCCCTCCGCTGCTGCCAT CGCTCAAGCAGCGACGGCCACGAGAACGCAATCCGACAGCTGCTGGAGCA GGGCAGGGCGCGGCTGGTGGCGACTACGCTAGGTGCCGAGGGATGCATCG TCGTCACCAGGTTAAAAGAGGCTTTGCAGTCCCTGTTTATTTTCCCTACT CTTGCAGAGACCATTTGTCTAGATGTGTATTGTGACATCAGGAGGTGATA TATTGAGGTCAGGGTCGTGTTTAGGGGGTGAAGCAAAGGCAGGATCAAGG AGAGCACGGGATTTCATTGATCGCTGGTTAGATCCTGGGTGCCGGTGGTA ATGCATGACTTTGTGTTGTTCGCCGAGTTGCTCGCTGATCCCCAAGCGTC ACTCGAGGTTCGTATTTGGAAACCACCTTGCTCAACAAACCGATTCATCT CTTATGGTCGTCCACTAGTTTTTTCTTAGGGGTGCGCTAAGGCGATACGT TGTTGTGGCAATGCCGGCTCTATGCGAATGCTTGTTTGATGCGCGCGGCT TTTATTCAATGGAGCATTTGCGACTTTCTACTTTTCGTAAGTCGTCTCCG ACCGGAAAGTGGACACAGCACGACTCCCATTCTCCTTACTCAATCCTCGT CTGGTTTGCCCCCTCTCTCGGCCAGGGAGAAAGACCAGCCATGGCGGGGG TATGGAGATTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig896:16014..20725+

>mRNA_Ecto-sp13_S_contig896.20497.1 ID=mRNA_Ecto-sp13_S_contig896.20497.1|Name=mRNA_Ecto-sp13_S_contig896.20497.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig896:16014..20725+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACGCGTGGTTTCGAGCAGGCGTTGGAGCGCAGACTTTGGCTGT
TGCCCACTGCTGGCTGCTCTACCCTGGCACAGGCAAGAGAGCGTGTGGAC
CTCTGACCAACATCAACATCAACATCTCCAACGGTGGGGCTCGCAGCGTT
GCATTATCATCGCCTGACCGTATCAGGAGCTTGAGCCAGGGAAGCGGCGG
TGGTGGGCTTTGCTCCGCTCTCGGTCCCGCCATGTCCGAGGGCCAGGCAG
TAGACGAAGTCGACAGCAGCGAGCGTCCGCGTGTGTTGGGTCTTGGATCC
GCGGGCGTTGACTTCATTGCCGCAGTCGACAGGTACCCGACGGCGGACGA
GAAGGTTCGAACACAATTTCTTCAGGTCCTGGGGGGAGGGAACTGCGGCA
ACACCCTTTCCGCAGCGAGTAGGCTCGGCTTGGACGCATGCCTGGCTACC
AAGGTCGGCTCCGACGCGAACGGCAGGCTGATCCTGCAAGGTTTGGAGGA
GGAAGGTGTGGACGTTTCCCGCGTCATCGTGAGCGATGCCACTCCCTCGG
CCTTCACGTACGTCATCGTGGACAAGGAGGGGGGCACCAGGACTTGCCTG
CACACCCCGCAGACGGAAGATATTCTTCCGGAAGAAATTACGCCGGACCT
GCTGGACGGGGTTGCTGCGGTGCACCTCGATTCAAGGCACACCCCGGCGG
CCGTCGCCTTGGCCAAGCTGGCCAACGAACGAGGCGTCCCGGTGGTTCTC
GACGCAGAGAAGGACCGACCGTTTCTAAAGGACCTCCTCCCGTTGGCGGA
CTACGTCATTTGCAACAGAAATTTCCCCCAGGCTTTCACCGGCAGGTGCG
GGGTCGACGGCCACGAGAACGCAATCCGACAGCTGCTGGAGCAGGGCAGG
GCGCGGCTGGTGGCGACTACGCTAGGTGCCGAGGGATGCATCGTCGTCAC
CAGGGAGAAAGACCAGCCATGGCGGGGGTATGGAGATTTT
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