mRNA_Ecto-sp13_S_contig8946.20473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8946.20473.1
Unique NamemRNA_Ecto-sp13_S_contig8946.20473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8946.20473.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.200e-6
Identity = 30/36 (83.33%), Postives = 30/36 (83.33%), Query Frame = -3 
Query:  390 DLAVELEGLGVDVIQTEGKFSLDPSK*VQGGCQTGI 497
            DLAVELEGLGVDVIQTEGKFSLDPSK   GG Q  I
Sbjct:  161 DLAVELEGLGVDVIQTEGKFSLDPSK---GGIQGAI 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8946.20473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP5_ECTSI6.200e-683.33Uncharacterized protein ycf23 n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8946contigEcto-sp13_S_contig8946:2204..2702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size500
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464166.952511-CDS-Ecto-sp13_S_contig8946:2203..26051681464166.952511-CDS-Ecto-sp13_S_contig8946:2203..2605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8946 2204..2605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464166.963913-UTR-Ecto-sp13_S_contig8946:2605..27021681464166.963913-UTR-Ecto-sp13_S_contig8946:2605..2702Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8946 2606..2702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8946.20473.1prot_Ecto-sp13_S_contig8946.20473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8946 2204..2605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8946.20473.1

>prot_Ecto-sp13_S_contig8946.20473.1 ID=prot_Ecto-sp13_S_contig8946.20473.1|Name=mRNA_Ecto-sp13_S_contig8946.20473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
VEKGTTLRTQQRNAEGCTGRKRASTTGPDTDDLRAFFRNGWQSWSLEATN
SINLPMLMSTSDGIYLLRTCTPPPLGERKRNKFDLQQDAQLHTATPASGH
STPTICNKILKSTQQFPPPDFPLHPRKTCQIPV*
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mRNA from alignment at Ecto-sp13_S_contig8946:2204..2702+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8946.20473.1 ID=mRNA_Ecto-sp13_S_contig8946.20473.1|Name=mRNA_Ecto-sp13_S_contig8946.20473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=499bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8946:2204..2702+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGAAAAGGGAACAACTCTCCGAACACAGCAGAGAAATGCGGAGGGATG
CACGGGAAGGAAAAGGGCGAGTACAACTGGTCCCGATACGGATGACCTCC
GTGCCTTCTTTCGAAACGGATGGCAAAGCTGGAGCCTCGAAGCGACGAAT
AGCATCAATTTGCCCATGCTCATGTCTACCTCTGATGGTATATATCTACT
TCGGACGTGTACACCACCTCCCCTTGGCGAAAGAAAGAGAAATAAGTTCG
ATCTGCAACAAGATGCTCAACTTCACACAGCAACTCCCGCCTCAGGACAT
TCCACACCTACGATCTGCAACAAGATTTTGAAATCAACACAGCAGTTCCC
ACCTCCGGACTTTCCACTCCATCCACGAAAAACATGTCAGATACCGGTCT
GACAGCCCCCTTGCACTTACTTGGATGGGTCGAGGCTGAACTTTCCTTCT
GTCTGGATGACGTCTACACCGAGACCCTCCAGCTCCACCGCCAAGTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8946:2204..2702+

>mRNA_Ecto-sp13_S_contig8946.20473.1 ID=mRNA_Ecto-sp13_S_contig8946.20473.1|Name=mRNA_Ecto-sp13_S_contig8946.20473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8946:2204..2702+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGAAAAGGGAACAACTCTCCGAACACAGCAGAGAAATGCGGAGGGATG
CACGGGAAGGAAAAGGGCGAGTACAACTGGTCCCGATACGGATGACCTCC
GTGCCTTCTTTCGAAACGGATGGCAAAGCTGGAGCCTCGAAGCGACGAAT
AGCATCAATTTGCCCATGCTCATGTCTACCTCTGATGGTATATATCTACT
TCGGACGTGTACACCACCTCCCCTTGGCGAAAGAAAGAGAAATAAGTTCG
ATCTGCAACAAGATGCTCAACTTCACACAGCAACTCCCGCCTCAGGACAT
TCCACACCTACGATCTGCAACAAGATTTTGAAATCAACACAGCAGTTCCC
ACCTCCGGACTTTCCACTCCATCCACGAAAAACATGTCAGATACCGGTCT
GA
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