mRNA_Ecto-sp13_S_contig8943.20468.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8943.20468.1
Unique NamemRNA_Ecto-sp13_S_contig8943.20468.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8943.20468.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.640e-18
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = -1 
Query:    1 SAESGDGVDDDALAPTTWSCPICTVDNDLANDKCVVCSQRRPA 129
            SAES DGVDDDALAPTTWSCPICTVDNDLA+DKCVVCSQRRPA
Sbjct: 2555 SAESVDGVDDDALAPTTWSCPICTVDNDLADDKCVVCSQRRPA 2597
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BLAST of mRNA_Ecto-sp13_S_contig8943.20468.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.600e-17
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = -1 
Query:    1 AESGDGVDDDALAPTTWSCPICTVDNDLANDKCVVCSQRRPA 126
            AESGDGVDDDALAPTTWSCP CTVDN+LA+DKCVVCS+RRPA
Sbjct: 3000 AESGDGVDDDALAPTTWSCPTCTVDNELADDKCVVCSKRRPA 3041
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8943.20468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI13_ECTSI4.640e-1895.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ21_9PHAE5.600e-1790.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8943contigEcto-sp13_S_contig8943:2957..3264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categorysignal anchor
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464166.5992665-CDS-Ecto-sp13_S_contig8943:2956..32621681464166.5992665-CDS-Ecto-sp13_S_contig8943:2956..3262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8943 2957..3262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8943.20468.1prot_Ecto-sp13_S_contig8943.20468.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8943 2957..3262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8943.20468.1

>prot_Ecto-sp13_S_contig8943.20468.1 ID=prot_Ecto-sp13_S_contig8943.20468.1|Name=mRNA_Ecto-sp13_S_contig8943.20468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
RRSALRAHDALVVGQVVVDGADGARPSGRGQGVVINAVTALGGRRFRPRR
LEPFVDAARFRSPVVRRRNTPTPLLGLLAGFLMLLLREAVLIPPITPRCL
LV
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mRNA from alignment at Ecto-sp13_S_contig8943:2957..3264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8943.20468.1 ID=mRNA_Ecto-sp13_S_contig8943.20468.1|Name=mRNA_Ecto-sp13_S_contig8943.20468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8943:2957..3264+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTCGGCGTTGCGAGCACACGACGCACTTGTCGTTGGCCAGGTCGT
TGTCGACGGTGCAGATGGGGCACGACCAAGTGGTCGGGGCCAAGGCGTCG
TCATCAACGCCGTCACCGCTCTCGGCGGACGCCGCTTCCGCCCCCGCCGT
CTTGAGCCGTTTGTTGACGCCGCTCGATTTCGATCGCCGGTTGTCCGCCG
CAGAAACACCCCGACGCCGCTTCTGGGTCTCCTCGCCGGCTTCCTCATGC
TGCTGCTGCGAGAGGCGGTTCTGATACCGCCGATCACGCCCCGCTGCCTC
CTCGTCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8943:2957..3264+

>mRNA_Ecto-sp13_S_contig8943.20468.1 ID=mRNA_Ecto-sp13_S_contig8943.20468.1|Name=mRNA_Ecto-sp13_S_contig8943.20468.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8943:2957..3264+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGGTCGGCGTTGCGAGCACACGACGCACTTGTCGTTGGCCAGGTCGT
TGTCGACGGTGCAGATGGGGCACGACCAAGTGGTCGGGGCCAAGGCGTCG
TCATCAACGCCGTCACCGCTCTCGGCGGACGCCGCTTCCGCCCCCGCCGT
CTTGAGCCGTTTGTTGACGCCGCTCGATTTCGATCGCCGGTTGTCCGCCG
CAGAAACACCCCGACGCCGCTTCTGGGTCTCCTCGCCGGCTTCCTCATGC
TGCTGCTGCGAGAGGCGGTTCTGATACCGCCGATCACGCCCCGCTGCCTC
CTCGTC
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