mRNA_Ecto-sp13_S_contig8926.20454.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8926.20454.1
Unique NamemRNA_Ecto-sp13_S_contig8926.20454.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8926.20454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8926contigEcto-sp13_S_contig8926:601..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size726
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.3050497-UTR-Ecto-sp13_S_contig8926:600..8101681464165.3050497-UTR-Ecto-sp13_S_contig8926:600..810Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8926 601..810 +
1681464165.3286622-UTR-Ecto-sp13_S_contig8926:1224..13261681464165.3286622-UTR-Ecto-sp13_S_contig8926:1224..1326Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8926 1225..1326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.3171477-CDS-Ecto-sp13_S_contig8926:810..12241681464165.3171477-CDS-Ecto-sp13_S_contig8926:810..1224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8926 811..1224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8926.20454.1prot_Ecto-sp13_S_contig8926.20454.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8926 811..1224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8926.20454.1

>prot_Ecto-sp13_S_contig8926.20454.1 ID=prot_Ecto-sp13_S_contig8926.20454.1|Name=mRNA_Ecto-sp13_S_contig8926.20454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MGSRVRTHLSTVILCLSPVPYNIISHFLGHVAESHPGPSSTNTRQLSNRV
EREGFIRPTQPDVGGGTPFLIPRHIPKQSIAFEPDAKLQQPAQPCIFLHN
ARAMLCENMLPGKGKTNNAKIMNKEGGIGGKVFKYRL*
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mRNA from alignment at Ecto-sp13_S_contig8926:601..1326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8926.20454.1 ID=mRNA_Ecto-sp13_S_contig8926.20454.1|Name=mRNA_Ecto-sp13_S_contig8926.20454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8926:601..1326+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTTTCACATCGTTGTTACTGTACGTGATACCAACCCCGCACTTTTTTA
TTAGCGAACCCCTTTCTTTGCGTACTTTCCAGGTAGGCAAGAAGAGCGCT
CTTCTTGAGGGGTAACCGGAACCTGGCCGATTGGCGGCGATACGTTTCAC
TTCCTTCACAATCTCCTGTGCGTGATTATTGTGTAGTGGTCACACGACGA
TGTCGAACGGATGGGTTCACGAGTTCGAACACATCTATCTACAGTAATAT
TATGTCTGTCCCCCGTCCCCTACAATATCATTTCCCATTTTTTGGGACAT
GTGGCGGAAAGTCACCCCGGGCCCTCTTCCACCAACACCAGACAGCTCTC
CAATCGCGTGGAAAGAGAGGGATTCATTCGTCCTACACAGCCAGACGTTG
GAGGTGGGACCCCTTTTTTAATACCCCGACATATCCCAAAACAAAGTATT
GCCTTCGAGCCTGATGCAAAGCTCCAGCAACCGGCGCAGCCGTGCATCTT
TCTGCATAATGCACGCGCCATGTTGTGTGAAAACATGCTTCCCGGAAAAG
GCAAGACAAACAACGCGAAAATCATGAACAAGGAAGGGGGGATCGGAGGC
AAAGTCTTCAAATATAGACTGTAGACCGAAAACGAGCAACCTCTTTCGAG
CTTGTTTTTCTCTTCGCCAACCACGACGTAAATTTTACACAGATCCGTCG
GTCAAAGCCGCCAGAAAAAACATCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8926:601..1326+

>mRNA_Ecto-sp13_S_contig8926.20454.1 ID=mRNA_Ecto-sp13_S_contig8926.20454.1|Name=mRNA_Ecto-sp13_S_contig8926.20454.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8926:601..1326+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTCACGAGTTCGAACACATCTATCTACAGTAATATTATGTCTGTC
CCCCGTCCCCTACAATATCATTTCCCATTTTTTGGGACATGTGGCGGAAA
GTCACCCCGGGCCCTCTTCCACCAACACCAGACAGCTCTCCAATCGCGTG
GAAAGAGAGGGATTCATTCGTCCTACACAGCCAGACGTTGGAGGTGGGAC
CCCTTTTTTAATACCCCGACATATCCCAAAACAAAGTATTGCCTTCGAGC
CTGATGCAAAGCTCCAGCAACCGGCGCAGCCGTGCATCTTTCTGCATAAT
GCACGCGCCATGTTGTGTGAAAACATGCTTCCCGGAAAAGGCAAGACAAA
CAACGCGAAAATCATGAACAAGGAAGGGGGGATCGGAGGCAAAGTCTTCA
AATATAGACTGTAG
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