mRNA_Ecto-sp13_S_contig8924.20453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Match: A0A6H5J6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M3_9PHAE) HSP 1 Score: 363 bits (932), Expect = 2.180e-125 Identity = 183/200 (91.50%), Postives = 188/200 (94.00%), Query Frame = 1
Query: 1 MVEATPATLHVWRVIGDESGIAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACSAVALVADDTGEKVEAGAEISNRENKLPGLMVSSDIPGAFKAAVLKSRLGVPPDQPLLPALGQRQPPAVLVCRESVCEWEVAVPHILLGFMARGNTWEERRVAEFRPRTGITAEARLCRPE 600
MVEATPATLHVWRVIGDESG+AAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPL AC AVALV DDTGEKVEAGAE + RENKLPGLMVSSDIPGAFKAAVLKSRLGVP D+PLLPALG+RQPP VLVCRESV EWEVAVPH LLG MARGN WEERRVAEFRP TGITAEARLCRP+
Sbjct: 16 MVEATPATLHVWRVIGDESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLGACGAVALVVDDTGEKVEAGAEFAKRENKLPGLMVSSDIPGAFKAAVLKSRLGVPSDEPLLPALGRRQPPVVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPHTGITAEARLCRPK 215
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Match: D7FX34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX34_ECTSI) HSP 1 Score: 280 bits (717), Expect = 1.630e-93 Identity = 143/158 (90.51%), Postives = 144/158 (91.14%), Query Frame = 1
Query: 127 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACSAVALVADDTGEKVEAGAEISNRENKLPGLMVSSDIPGAFKAAVLKSRLGVPPDQPLLPALGQRQPPAVLVCRESVCEWEVAVPHILLGFMARGNTWEERRVAEFRPRTGITAEARLCRPE 600
MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAAC AVALV DDTGEKVEAGAE + RE KLPGLMVSSDIPGAFKAAVLKSRLGV PD PLLPALGQRQPPAVLVCRESV EWEVAVPH LLG MARGN WEERRVAEFRPR GITAEARLC E
Sbjct: 1 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVEAGAETAKREQKLPGLMVSSDIPGAFKAAVLKSRLGVLPDDPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPRAGITAEARLCGAE 158
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Match: A0A0G4I9W5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9W5_9ALVE) HSP 1 Score: 88.6 bits (218), Expect = 1.240e-17 Identity = 76/208 (36.54%), Postives = 108/208 (51.92%), Query Frame = 1
Query: 16 PATLHVWRVIGDESGIAAYAAA----RAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISL--------PLAACSAVALVADDTGEKVEAGAEISNRENKLPGLMVSSDIPGAFKAAVLKSRLGVPPDQPLLPALGQRQPPAVLVCRESVCEWEVAVPHILLG-FMARGNTWEERRVAEFRPRTGITAEARLCRPE 600
PA+L V++++G + + Y AA R S A E DWSA+Y Q +A+GTL YRWDQG+ +A L +++L P AA SA TG +VE+ + K G M + G KA +LK L + + PL+ LG R VL C+E+ +WE+AVPH + FM+ NT +RR EF + G+T R E
Sbjct: 22 PASLSVFKIVGGKETVEEYLAAVHKARGGSETAK-EPDWSALYLQFDEAHALGTLPYRWDQGFSLASLWKLTLKGKEESPAPGAAASAGG-EGKGTGGQVESTVGLQAVIVK-GGWMAGGSVAGEEKADILKKSLELNVELPLMAQLGSRG--MVLCCKETGGQWEMAVPHSCVSRFMS--NT-VQRREKEFEEKCGMTRRWRWIEEE 221
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Match: A0A812NMX1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NMX1_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 1.060e-8 Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query: 127 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACSAVALVADDTGEKVEAGAEISNRENKLPGLMVSSDIPGAFKAAVLKSRLGVPPDQPLLPALGQRQPPAVLVCRESVCEWEVAVPHILLGFMARGNTWEERRVAEFR 555
+Y Q + +GT+ YRW++G+ ARLV + T E++E + + +L +S G KAA++K +LG+ ++PLL ALG+R+ V + RE+ EWE+ +PH LL + ++ER +A FR
Sbjct: 85 LYTQFQRDHVLGTVPYRWEKGHSEARLVAV----------------TFEELEI---VVLEDERLHDAGMS----GEQKAAMVKKKLGILEEEPLLEALGKRR--QVALVRETESEWELIIPHDLLPTLP----FQERGIARFR 198
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Match: A0A812U1T2_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812U1T2_SYMPI) HSP 1 Score: 55.1 bits (131), Expect = 4.800e-6 Identity = 41/131 (31.30%), Postives = 63/131 (48.09%), Query Frame = 1
Query: 103 TTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACSAV-ALVADDTGEKVEAGAEISNRENKLPGLMVSSDIPGAFKAAVLKSRLGVPPDQPLLPALGQRQPPAVLVCRESVCEWEVAVPH 492
++E DW+AMY Q +A+GT+ YRWDQ P P + S + A D V GA L + + G+ KA ++K RL + ++PL+ LG++ L+ +ES EWE+ H
Sbjct: 3 SSEHDWTAMYTQFRVSHALGTVPYRWDQAGPD------GTPYMSASLLEARFLDPLPVVVARGA-----------LFADASVEGSVKAQLVKERLDLKIEEPLMKQLGEQG--KALLMQESETEWELIFSH 114 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8924.20453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8924.20453.1 >prot_Ecto-sp13_S_contig8924.20453.1 ID=prot_Ecto-sp13_S_contig8924.20453.1|Name=mRNA_Ecto-sp13_S_contig8924.20453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp MVEATPATLHVWRVIGDESGIAAYAAARAPSVPATTESDWSAMYFQLSPGback to top mRNA from alignment at Ecto-sp13_S_contig8924:5638..6237+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8924.20453.1 ID=mRNA_Ecto-sp13_S_contig8924.20453.1|Name=mRNA_Ecto-sp13_S_contig8924.20453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8924:5638..6237+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8924:5638..6237+ >mRNA_Ecto-sp13_S_contig8924.20453.1 ID=mRNA_Ecto-sp13_S_contig8924.20453.1|Name=mRNA_Ecto-sp13_S_contig8924.20453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8924:5638..6237+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |