mRNA_Ecto-sp13_S_contig89203.20452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig89203.20452.1
Unique NamemRNA_Ecto-sp13_S_contig89203.20452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A6H5K2J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.440e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            A   +VIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQ+G
Sbjct:  197 ADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIG 244
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: D7FJT6_ECTSI (ATP synthase O subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 5.370e-18
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            A   +VIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQ+G
Sbjct:  213 ADAEKVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQIG 260
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A836CGT7_9STRA (OSCP/delta subunit of ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.210e-10
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   13 QVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            +VI A+T ++KAK+GE+DAIVTTAEPL+  QEKAL A LK QVG
Sbjct:  124 RVIGAFTELMKAKRGEVDAIVTTAEPLSAAQEKALIAALKKQVG 167
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A7S2HDJ6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HDJ6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.320e-6
Identity = 21/48 (43.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            A   +++D+Y +++KAK+GE++A + +A+PLT  Q +A+AA +K QVG
Sbjct:  118 AETPKIVDSYVQLMKAKRGEVEATIISADPLTKAQTEAVAAAMKNQVG 165
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A6U5IKY9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKY9_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.710e-5
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQV 141
            A   +V+D+Y +++KAK+GE++A + +AEPLT  Q  A+A  +K QV
Sbjct:  117 ADTTKVVDSYIQLMKAKRGEVEATIISAEPLTKAQSDAIATAMKGQV 163
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A7S4MZM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZM0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.730e-5
Identity = 19/48 (39.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            A + +++D Y +++KAK+GE++A++ +A+ LT  Q  A+AA +K Q G
Sbjct:  123 ADVPKIVDTYVQLMKAKRGEVEAVIISADKLTKAQTDAVAAAMKGQAG 170
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A7R9WJE6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJE6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.920e-5
Identity = 18/48 (37.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            + + +++D Y  ++KAK+GE++A++ +A+ LT  Q +A+A+ +K QVG
Sbjct:  130 SEVPKIVDTYVELMKAKRGEVEAVIISADKLTKAQAEAVASAMKGQVG 177
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BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Match: A0A7S0AD47_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AD47_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.400e-5
Identity = 19/44 (43.18%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   13 QVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG 144
            +++D Y+R++KA +GE+ A + +A+PLT  Q  A+A+ +K QVG
Sbjct:  100 KIVDTYSRLMKAARGEVSATIISADPLTKAQTDAVASAMKGQVG 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89203.20452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5K2J5_9PHAE4.440e-1889.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJT6_ECTSI5.370e-1889.58ATP synthase O subunit, mitochondrial n=1 Tax=Ecto... [more]
A0A836CGT7_9STRA6.210e-1068.18OSCP/delta subunit of ATPase n=1 Tax=Tribonema min... [more]
A0A7S2HDJ6_9STRA3.320e-643.75Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U5IKY9_9STRA1.710e-544.68Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4MZM0_9STRA4.730e-539.58Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WJE6_9STRA4.920e-537.50Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A7S0AD47_9STRA5.400e-543.18Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89203contigEcto-sp13_S_contig89203:64..207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog2880.D7FJT6
Preferred nameATP5
Model size144
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0008270,GO:0009507,GO:0009536,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0046872,GO:0046914,GO:0050897,GO:0071944,GO:0098796,GO:0098798,GO:0098800
Exons1
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0712@1,KOG1662@2759
Cds size144
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464165.2025893-CDS-Ecto-sp13_S_contig89203:63..2071681464165.2025893-CDS-Ecto-sp13_S_contig89203:63..207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89203 64..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89203.20452.1prot_Ecto-sp13_S_contig89203.20452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig89203 64..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig89203.20452.1

>prot_Ecto-sp13_S_contig89203.20452.1 ID=prot_Ecto-sp13_S_contig89203.20452.1|Name=mRNA_Ecto-sp13_S_contig89203.20452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
AHLAQVIDAYTRMLKAKKGEIDAIVTTAEPLTPQQEKALAAGLKAQVG
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mRNA from alignment at Ecto-sp13_S_contig89203:64..207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig89203.20452.1 ID=mRNA_Ecto-sp13_S_contig89203.20452.1|Name=mRNA_Ecto-sp13_S_contig89203.20452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89203:64..207+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACTTGGCCCAGGTGATCGACGCGTACACCCGCATGCTGAAGGCGAA
GAAGGGGGAGATCGACGCCATCGTCACTACCGCGGAGCCCCTTACCCCCC
AGCAGGAGAAGGCCCTGGCGGCCGGCCTCAAAGCGCAGGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig89203:64..207+

>mRNA_Ecto-sp13_S_contig89203.20452.1 ID=mRNA_Ecto-sp13_S_contig89203.20452.1|Name=mRNA_Ecto-sp13_S_contig89203.20452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89203:64..207+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACTTGGCCCAGGTGATCGACGCGTACACCCGCATGCTGAAGGCGAA
GAAGGGGGAGATCGACGCCATCGTCACTACCGCGGAGCCCCTTACCCCCC
AGCAGGAGAAGGCCCTGGCGGCCGGCCTCAAAGCGCAGGTGGGG
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