mRNA_Ecto-sp13_S_contig89134.20443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig89134.20443.1
Unique NamemRNA_Ecto-sp13_S_contig89134.20443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig89134.20443.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.050e-16
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:    3 YRLEEGVDISAMASQNAYNVGWTRPGEFLRYTVTVEEA 116
            YRLEEGVDISAM SQNAYNVGWTRPGEFLRYTVTVEEA
Sbjct:  320 YRLEEGVDISAMESQNAYNVGWTRPGEFLRYTVTVEEA 357
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BLAST of mRNA_Ecto-sp13_S_contig89134.20443.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.270e-14
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 RTDWKKVLTSQRWRAKMLTTSGGQDPVNSCATQSPSRKL 117
            RTDWKKVLTSQRW A MLTTSGGQDP NSCATQSPS KL
Sbjct:  984 RTDWKKVLTSQRWGANMLTTSGGQDPANSCATQSPSSKL 1022
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BLAST of mRNA_Ecto-sp13_S_contig89134.20443.1 vs. uniprot
Match: A0A0G1IGE4_9BACT (Probable pectate lyase C n=1 Tax=Parcubacteria group bacterium GW2011_GWB1_43_8b TaxID=1618875 RepID=A0A0G1IGE4_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 5.320e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:    3 YRLEEGVDISAM--ASQNAYNVGWTRPGEFLRYTVTV 107
            YRL EGVDI      S ++Y+VGWT+PGE+L+Y+V V
Sbjct:   79 YRLTEGVDIETTNDGSGSSYHVGWTKPGEWLKYSVNV 115
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BLAST of mRNA_Ecto-sp13_S_contig89134.20443.1 vs. uniprot
Match: A0A353TWH0_9BACT (Glycoside hydrolase family 5 n=7 Tax=Marinilabiliaceae bacterium TaxID=2053574 RepID=A0A353TWH0_9BACT)

HSP 1 Score: 46.6 bits (109), Expect = 9.950e-5
Identity = 21/36 (58.33%), Postives = 25/36 (69.44%), Query Frame = 3 
Query:   15 EGVDISAMAS--QNAYNVGWTRPGEFLRYTVTVEEA 116
            +GVDI A      N +NVGWT PGE++RYTVT  EA
Sbjct:  500 DGVDIEACNDGISNGFNVGWTEPGEWMRYTVTAAEA 535
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89134.20443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEN4_9PHAE1.050e-1697.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI1.270e-1489.74Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A0G1IGE4_9BACT5.320e-556.76Probable pectate lyase C n=1 Tax=Parcubacteria gro... [more]
A0A353TWH0_9BACT9.950e-558.33Glycoside hydrolase family 5 n=7 Tax=Marinilabilia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89134contigEcto-sp13_S_contig89134:15..133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.4
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog2880.D8LL13
Model size120
KEGG koko:K01180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
Cds size117
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464164.5955691-CDS-Ecto-sp13_S_contig89134:14..1311681464164.5955691-CDS-Ecto-sp13_S_contig89134:14..131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89134 15..131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89134.20443.1prot_Ecto-sp13_S_contig89134.20443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig89134 15..131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig89134.20443.1

>prot_Ecto-sp13_S_contig89134.20443.1 ID=prot_Ecto-sp13_S_contig89134.20443.1|Name=mRNA_Ecto-sp13_S_contig89134.20443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
RTDWKKVLTSQRWRAKMLTTSGGQDPVNSCATQSPSRKL
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mRNA from alignment at Ecto-sp13_S_contig89134:15..133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig89134.20443.1 ID=mRNA_Ecto-sp13_S_contig89134.20443.1|Name=mRNA_Ecto-sp13_S_contig89134.20443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89134:15..133+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTACCGATTGGAAGAAGGTGTTGACATCTCAGCGATGGCGAGCCAAAAT
GCTTACAACGTCGGGTGGACAAGACCCGGTGAATTCCTGCGCTACACAGT
CACCGTCGAGGAAGCTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig89134:15..133+

>mRNA_Ecto-sp13_S_contig89134.20443.1 ID=mRNA_Ecto-sp13_S_contig89134.20443.1|Name=mRNA_Ecto-sp13_S_contig89134.20443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89134:15..133+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTACCGATTGGAAGAAGGTGTTGACATCTCAGCGATGGCGAGCCAAAAT
GCTTACAACGTCGGGTGGACAAGACCCGGTGAATTCCTGCGCTACACAGT
CACCGTCGAGGAAGCTG
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