mRNA_Ecto-sp13_S_contig8912.20442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8912.20442.1
Unique NamemRNA_Ecto-sp13_S_contig8912.20442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: D7FJ85_ECTSI (Calnexin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ85_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 4.200e-72
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 1
Query:    1 LRTGEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            LRTGEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDN  KDLVLQYEVQVRGGANCGGAYVKMLRG +GEDMSTLNNDSPYSIMFGPDKC
Sbjct:   28 LRTGEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNTGKDLVLQYEVQVRGGANCGGAYVKMLRGGSGEDMSTLNNDSPYSIMFGPDKC 140          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: D2VMP2_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VMP2_NAEGR)

HSP 1 Score: 108 bits (269), Expect = 4.840e-25
Identity = 55/115 (47.83%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    7 TGEWVLSQDPKYEGQEARVRVERCDLEGGV--FHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGE--DMSTLNNDSPYSIMFGPDKC 339
            +G+WV SQD KY  Q+    VE  +  G V  F GD+G+L+  + +H+GV + +   +DN +KDL++QYEV+     +CGGAY+K+L    GE  DM+TLNNDS Y IMFGPD C
Sbjct:  642 SGKWVKSQDSKYATQQ----VEWTEATGNVLAFSGDHGILMKNAGQHFGVASKISPSIDNENKDLIIQYEVKFDSKLSCGGAYLKLLLEKEGEELDMATLNNDSEYVIMFGPDMC 752          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A152A6Z7_9MYCE (Calnexin n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6Z7_9MYCE)

HSP 1 Score: 105 bits (261), Expect = 4.460e-24
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   16 WVLSQDPKYEGQ--EARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            W+ S +PKYEG   E +   E  D+       D G++L    KHY + A L K +DN DKDLV+QYEVQ++ G +CGGAY+K+   +      T++N++PYSIMFGPDKC
Sbjct:   43 WIKSNNPKYEGSIVEIQSAAEPVDVS------DKGMVLTLPAKHYAMTAKLLKAIDNTDKDLVIQYEVQLQNGMDCGGAYIKLYTDSESLSPETVDNNTPYSIMFGPDKC 146          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A7S2BN79_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BN79_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.650e-24
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    7 TGEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            +G W  S + KY GQ   V VE        + GD+ +LL  +++HYG G+    P+D  DK  V+QYEV++  G  CGGAY+K+LR     D++T++N+SPY IMFGPD C
Sbjct:   78 SGAWKKSSNSKYTGQPVSVTVEN----DAPYAGDHAVLLSAANQHYGFGSKFSAPLDTTDKPFVVQYEVKLLDGMKCGGAYLKLLRDEPELDVATMDNESPYVIMFGPDSC 184          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: UPI001CFEE52A (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFEE52A)

HSP 1 Score: 104 bits (260), Expect = 6.890e-24
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    7 TGEWVLSQDPKYEGQEARVRVERCDLEGGV--FHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            +G WV S+D KY  Q     VE     G V  F GD GLL+ ++ +HYGV + +  P+DN +KDL++QYEV+     +CGGAY+K+L  +    +  LNNDSPY IMFGPD C
Sbjct:  106 SGRWVKSKDSKYVNQP----VEWTGATGKVVAFAGDKGLLMKQAGQHYGVASRITPPIDNENKDLIVQYEVKFDSKLSCGGAYIKLLDDSKITSLEQLNNDSPYIIMFGPDLC 214          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A6A5C445_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C445_NAEFO)

HSP 1 Score: 102 bits (254), Expect = 4.520e-23
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    7 TGEWVLSQDPKYEGQEARVRVERCDLEGGVFH--GDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            +G WV S+D KY  Q+    VE     G V    GD GLL+  + +HYGV + +  P+DN +KDL++QYEV+     +CGGAY+K+L  +    +  LNN+SPY IMFGPD C
Sbjct:  101 SGRWVKSKDEKYANQQ----VEWTGATGNVVSNAGDKGLLMKHAGQHYGVASRITPPIDNENKDLIVQYEVKFDSKLSCGGAYIKLLDDSKITTLEVLNNESPYIIMFGPDLC 209          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A2K1KUN5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KUN5_PHYPA)

HSP 1 Score: 102 bits (253), Expect = 5.820e-23
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   10 GEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGA-AGEDMSTLNNDSPYSIMFGPDKC 339
            G WV+SQ+ +Y G     + E         H DYGLL+ E  K YG+   LP+ VD  D  LVLQY+++++ G  CGGAY+K L+   AG   +  NN+SPYSIMFGPDKC
Sbjct:   43 GRWVVSQNSEYGGTWKHAKSEG--------HDDYGLLVSEKAKKYGIAVDLPEKVDPKDGALVLQYDLRLQSGLECGGAYLKFLQPQEAGWTANDFNNESPYSIMFGPDKC 145          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A2K1JLV1_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JLV1_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 1.490e-22
Identity = 51/111 (45.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   10 GEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGA-AGEDMSTLNNDSPYSIMFGPDKC 339
            G WV+SQ+  Y G     + +         H DYGLL+ E  K YG+   LP+ VD  D  LVLQY+++++ G  CGGAY+K L+   AG   +  NN+SPYSIMFGPDKC
Sbjct:   42 GRWVVSQNSDYGGTWKHAKSDG--------HDDYGLLVSEKAKKYGIAVDLPEKVDPKDGSLVLQYDLRLQNGLECGGAYLKFLQPQEAGWTANDFNNESPYSIMFGPDKC 144          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: A0A024G7E5_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G7E5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.770e-22
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 1
Query:   16 WVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKPV--DNADK--DLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            WV S   KY  Q+  V VER  +  G    D GL+  +  KHYGVGA L + +  D +DK  +LV+QYEV+++ G +CGGAY+K+LR     D+  L+ D+PY IMFGPDKC
Sbjct:   56 WVKSAHEKYASQD--VEVERYFVAAGDVGNDSGLVFRQPAKHYGVGAKLKEKILLDGSDKKKELVVQYEVKLQEGLSCGGAYIKLLRAEDDLDLKKLDQDTPYVIMFGPDKC 165          
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Match: K3XC77_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC77_GLOUD)

HSP 1 Score: 99.8 bits (247), Expect = 4.020e-22
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   16 WVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGVGATLPKP--VDNAD--KDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNNDSPYSIMFGPDKC 339
            W  S   KY  QE  V V+   +  G    D GL+LD   KHYG+   L KP  +D ++  K+LV+QYEV+++ G NCGGAYVK+LR     D  T ++D+P+ IMFGPDKC
Sbjct:   78 WFKSSHEKYTNQE--VSVDEYTVRTGHVSPDKGLVLDAPAKHYGLAVKLDKPLHIDGSEQNKELVVQYEVKLQKGLNCGGAYVKLLRANESTDFKTFSDDTPFVIMFGPDKC 187          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8912.20442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ85_ECTSI4.200e-7296.46Calnexin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ8... [more]
D2VMP2_NAEGR4.840e-2547.83Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A152A6Z7_9MYCE4.460e-2446.36Calnexin n=1 Tax=Tieghemostelium lacteum TaxID=361... [more]
A0A7S2BN79_9STRA4.650e-2444.14Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
UPI001CFEE52A6.890e-2446.90uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5C445_NAEFO4.520e-2345.13Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A2K1KUN5_PHYPA5.820e-2346.85Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A2K1JLV1_PHYPA1.490e-2245.95Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A024G7E5_9STRA3.770e-2247.32Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
K3XC77_GLOUD4.020e-2246.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8912contigEcto-sp13_S_contig8912:5351..6432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score234.6
Seed ortholog evalue2.3e-59
Seed eggNOG ortholog2880.D7FJ85
Model size339
KEGG koko:K08054,ko:K12852
KEGG Pathwayko03040,ko04141,ko04145,ko04612,ko04918,ko05166,map03040,map04141,map04145,map04612,map04918,map05166
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006915,GO:0006950,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010498,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0019538,GO:0019941,GO:0030163,GO:0030176,GO:0030433,GO:0031224,GO:0031227,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0033036,GO:0033554,GO:0034605,GO:0034613,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0042594,GO:0042886,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0050896,GO:0051082,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons3
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG0675@1,KOG0675@2759
Cds size339
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko03110,ko04091,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464164.548469-CDS-Ecto-sp13_S_contig8912:5350..55391681464164.548469-CDS-Ecto-sp13_S_contig8912:5350..5539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8912 5351..5539 +
1681464164.5598366-CDS-Ecto-sp13_S_contig8912:5775..58411681464164.5598366-CDS-Ecto-sp13_S_contig8912:5775..5841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8912 5776..5841 +
1681464164.5691736-CDS-Ecto-sp13_S_contig8912:6348..64321681464164.5691736-CDS-Ecto-sp13_S_contig8912:6348..6432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8912 6349..6432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8912.20442.1prot_Ecto-sp13_S_contig8912.20442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8912 5351..6432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8912.20442.1

>prot_Ecto-sp13_S_contig8912.20442.1 ID=prot_Ecto-sp13_S_contig8912.20442.1|Name=mRNA_Ecto-sp13_S_contig8912.20442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
LRTGEWVLSQDPKYEGQEARVRVERCDLEGGVFHGDYGLLLDESHKHYGV
GATLPKPVDNADKDLVLQYEVQVRGGANCGGAYVKMLRGAAGEDMSTLNN
DSPYSIMFGPDKC
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mRNA from alignment at Ecto-sp13_S_contig8912:5351..6432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8912.20442.1 ID=mRNA_Ecto-sp13_S_contig8912.20442.1|Name=mRNA_Ecto-sp13_S_contig8912.20442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1082bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8912:5351..6432+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGACGGGCGAGTGGGTCCTGAGTCAAGACCCCAAGTATGAAGGGCA GGAGGCCAGGGTAAGGGTGGAGCGGTGCGACCTCGAGGGAGGCGTTTTCC ACGGCGACTATGGCCTTCTCCTCGACGAGTCCCACAAGCACTACGGGGTG GGGGCGACCCTACCGAAGCCTGTCGACAATGCGGACAAGGTGACACGCGC TCTCCTGGTCGCTTGGTCTCATGACTGATGTTGGGGTTTGGATGAGATGT TTGGAGAGGCGTAAGGGTTTTGACGACGTACGGTAGGCGTTTAGTACCCC AAGATGTAAGAGGATTCTAGGCGTGATGGCCTTTTCATAGTAGGACCGAC AGCCGTGTTAATGGCATTGAACGTTTTTGGTGGTTGACTTGTTGCTTTCC GCGTGTTGTCGTCTGCCGTGCCCAGGACCTCGTGCTGCAGTACGAAGTGC AGGTCCGGGGTGGAGCGAACTGCGGCGGAGCTTACGTCAAGGTGAGGAGC GGCAGGCAGAGCGGTTGGCTTTGACGGGTCCTCGTTACCGTTGTGGTTGT TGTTGTGTGGTTTGGGGTTGTTGTTGCTGCTACGGTTTCGCGGCCGTTCC CATGTGTCTGATGGTGCCGCGAGGCGGTGCGCACTGTACGTGTCTGCTCG TACCGGGCACCGTTGACTAACTTCCCTCGCCCGCTGGGGGGGGGCGCTGT AGCGTAGAAACGCCGTCTGCCGTTCGGTCTGAGCCTCTCACCCATACTGC TGTCAGCCTTTTCCTCTCGAAACGCTCGAGGTACCCTAAAGAGTTGGAAA GTTGTTTTTTCTCTTGTTTGATTCGATGCTAAAGCGGGGATTGCGGGAGA GTGGGCGCCAGACGCCTCAAGCGTGCTCAACGGCACGGAATGCTCTGGGG GAGCCGCAGAAAGGACACGCCGGCCGTGGCCAATGGACTTATATCTAGGC GAAACTCAAACCCACCACGCAACCCGCCCTGCCTCGCCGACACTGCAGAT GCTCCGGGGGGCCGCCGGAGAAGACATGTCGACGCTGAACAATGACAGCC CTTACTCTATCATGTTCGGGCCTGATAAGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8912:5351..6432+

>mRNA_Ecto-sp13_S_contig8912.20442.1 ID=mRNA_Ecto-sp13_S_contig8912.20442.1|Name=mRNA_Ecto-sp13_S_contig8912.20442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8912:5351..6432+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGACGGGCGAGTGGGTCCTGAGTCAAGACCCCAAGTATGAAGGGCA
GGAGGCCAGGGTAAGGGTGGAGCGGTGCGACCTCGAGGGAGGCGTTTTCC
ACGGCGACTATGGCCTTCTCCTCGACGAGTCCCACAAGCACTACGGGGTG
GGGGCGACCCTACCGAAGCCTGTCGACAATGCGGACAAGGACCTCGTGCT
GCAGTACGAAGTGCAGGTCCGGGGTGGAGCGAACTGCGGCGGAGCTTACG
TCAAGATGCTCCGGGGGGCCGCCGGAGAAGACATGTCGACGCTGAACAAT
GACAGCCCTTACTCTATCATGTTCGGGCCTGATAAGTGC
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