mRNA_Ecto-sp13_S_contig890.20419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig890.20419.1
Unique NamemRNA_Ecto-sp13_S_contig890.20419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig890.20419.1 vs. uniprot
Match: Q8QNE3_ESV1K (EsV-1-136 n=2 Tax=root TaxID=1 RepID=Q8QNE3_ESV1K)

HSP 1 Score: 225 bits (573), Expect = 2.250e-74
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:    1 MSNPAFPDSTSGTSPLPMVPDLGVDTPVVRVPNTVSNEQYQEIPAWTYRKFQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSFTILYCISLFVFLFMMIVPVI 354
            MS PAFPDSTSGT+PLPMVPDLGVDTP+VRVPNT SNEQYQEIPAWTYRKFQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSFTILYCISLF FLFMMIVPVI
Sbjct:    1 MSTPAFPDSTSGTAPLPMVPDLGVDTPIVRVPNTFSNEQYQEIPAWTYRKFQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSFTILYCISLFAFLFMMIVPVI 118
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BLAST of mRNA_Ecto-sp13_S_contig890.20419.1 vs. uniprot
Match: Q6XM65_9PHYC (FirrV-1-A22 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM65_9PHYC)

HSP 1 Score: 71.6 bits (174), Expect = 4.280e-14
Identity = 31/74 (41.89%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  124 EIPAWTYRKFQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSF-------TILYCISLFV 324
            ++  W+Y+KF+ TD+F+SK+GI+ TT++ TF +L+ +NPPFVQE + + ++I +PS         + +CI LFV
Sbjct:    8 QLSDWSYKKFEFTDIFHSKMGIAVTTSVLTFGILAYINPPFVQENNGSKLQIHRPSIHKIGSLSAVSFCILLFV 81
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig890.20419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNE3_ESV1K2.250e-7495.76EsV-1-136 n=2 Tax=root TaxID=1 RepID=Q8QNE3_ESV1K[more]
Q6XM65_9PHYC4.280e-1441.89FirrV-1-A22 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig890contigEcto-sp13_S_contig890:18981..19337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-136
Ec32 orthologEc-06_005490.1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464163.0684228-CDS-Ecto-sp13_S_contig890:18980..193371681464163.0684228-CDS-Ecto-sp13_S_contig890:18980..19337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig890 18981..19337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig890.20419.1prot_Ecto-sp13_S_contig890.20419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig890 18981..19337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig890.20419.1

>prot_Ecto-sp13_S_contig890.20419.1 ID=prot_Ecto-sp13_S_contig890.20419.1|Name=mRNA_Ecto-sp13_S_contig890.20419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MSNPAFPDSTSGTSPLPMVPDLGVDTPVVRVPNTVSNEQYQEIPAWTYRK
FQLTDLFYSKVGISATTALCTFSVLSVLNPPFVQEKSDNPIEISKPSFTI
LYCISLFVFLFMMIVPVI*
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mRNA from alignment at Ecto-sp13_S_contig890:18981..19337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig890.20419.1 ID=mRNA_Ecto-sp13_S_contig890.20419.1|Name=mRNA_Ecto-sp13_S_contig890.20419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:18981..19337- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAACCCAGCGTTTCCCGACAGCACTTCTGGTACGTCCCCCCTACC
GATGGTCCCAGACCTCGGTGTCGACACGCCTGTGGTACGTGTGCCAAACA
CAGTTTCTAACGAACAATACCAGGAGATCCCCGCGTGGACGTACAGGAAG
TTTCAGCTCACTGATCTTTTCTACTCAAAGGTTGGTATATCGGCGACCAC
TGCCCTCTGTACCTTCTCCGTCCTTTCTGTACTGAACCCCCCCTTTGTCC
AAGAAAAAAGCGACAACCCTATCGAAATCAGCAAACCCAGCTTCACCATC
CTCTACTGTATCTCTCTCTTTGTTTTCTTGTTCATGATGATTGTCCCCGT
GATATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig890:18981..19337-

>mRNA_Ecto-sp13_S_contig890.20419.1 ID=mRNA_Ecto-sp13_S_contig890.20419.1|Name=mRNA_Ecto-sp13_S_contig890.20419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:18981..19337- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCAACCCAGCGTTTCCCGACAGCACTTCTGGTACGTCCCCCCTACC
GATGGTCCCAGACCTCGGTGTCGACACGCCTGTGGTACGTGTGCCAAACA
CAGTTTCTAACGAACAATACCAGGAGATCCCCGCGTGGACGTACAGGAAG
TTTCAGCTCACTGATCTTTTCTACTCAAAGGTTGGTATATCGGCGACCAC
TGCCCTCTGTACCTTCTCCGTCCTTTCTGTACTGAACCCCCCCTTTGTCC
AAGAAAAAAGCGACAACCCTATCGAAATCAGCAAACCCAGCTTCACCATC
CTCTACTGTATCTCTCTCTTTGTTTTCTTGTTCATGATGATTGTCCCCGT
GATATAA
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