mRNA_Ecto-sp13_S_contig890.20406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig890.20406.1
Unique NamemRNA_Ecto-sp13_S_contig890.20406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig890.20406.1 vs. uniprot
Match: Q8QNF9_ESV1K (EsV-1-120 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNF9_ESV1K)

HSP 1 Score: 171 bits (434), Expect = 6.130e-53
Identity = 91/110 (82.73%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:    1 LTFTIFSATYRATRAGTSTAAAA--SSWCICALRTTGPNIFSRLLLSKNMLEFLYTPDS*SSRLCSCQQMNNSKPWPWSDDAKAFSVSLVPSNLIRAETSCALHTHTVSV 324
            L FTI SAT +AT AGTSTAAAA  SSW  CALRTTGPNIFSRL  SKNML+ LYTPDS SSRLCSCQQMNNSKPWPWSDDAKAFSVSL PSN  +AETSCALHTH VSV
Sbjct:   12 LAFTIRSATNKATEAGTSTAAAAAASSWYTCALRTTGPNIFSRLRFSKNMLQLLYTPDSYSSRLCSCQQMNNSKPWPWSDDAKAFSVSLAPSNSTKAETSCALHTHNVSV 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig890.20406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNF9_ESV1K6.130e-5382.73EsV-1-120 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig890contigEcto-sp13_S_contig890:4864..5193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464162.581035-CDS-Ecto-sp13_S_contig890:4863..49921681464162.581035-CDS-Ecto-sp13_S_contig890:4863..4992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig890 4864..4992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464162.591848-UTR-Ecto-sp13_S_contig890:4992..51931681464162.591848-UTR-Ecto-sp13_S_contig890:4992..5193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig890 4993..5193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig890.20406.1prot_Ecto-sp13_S_contig890.20406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig890 4864..4992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig890.20406.1

>prot_Ecto-sp13_S_contig890.20406.1 ID=prot_Ecto-sp13_S_contig890.20406.1|Name=mRNA_Ecto-sp13_S_contig890.20406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MNNSKPWPWSDDAKAFSVSLVPSNLIRAETSCALHTHTVSVL*
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mRNA from alignment at Ecto-sp13_S_contig890:4864..5193-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig890.20406.1 ID=mRNA_Ecto-sp13_S_contig890.20406.1|Name=mRNA_Ecto-sp13_S_contig890.20406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:4864..5193- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACGTTCACGATCTTCTCGGCAACATATAGGGCGACCAGAGCAGGAAC
TTCCACCGCCGCAGCGGCGTCGTCCTGGTGCATTTGCGCTCTGAGGACGA
CAGGGCCAAACATTTTTTCCCGCCTACTACTTTCAAAAAACATGTTGGAG
TTCTTGTACACTCCTGATTCGTAGAGTTCTCGGCTATGCTCGTGCCAACA
GATGAACAATTCGAAGCCGTGGCCCTGGAGTGACGATGCGAAGGCCTTCA
GTGTGTCGTTGGTGCCGTCCAACTTGATAAGAGCGGAAACATCCTGTGCG
CTGCACACGCACACAGTGTCTGTCTTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig890:4864..5193-

>mRNA_Ecto-sp13_S_contig890.20406.1 ID=mRNA_Ecto-sp13_S_contig890.20406.1|Name=mRNA_Ecto-sp13_S_contig890.20406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig890:4864..5193- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAATTCGAAGCCGTGGCCCTGGAGTGACGATGCGAAGGCCTTCAG
TGTGTCGTTGGTGCCGTCCAACTTGATAAGAGCGGAAACATCCTGTGCGC
TGCACACGCACACAGTGTCTGTCTTATAG
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