mRNA_Ecto-sp13_S_contig89.20397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig89.20397.1
Unique NamemRNA_Ecto-sp13_S_contig89.20397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig89.20397.1 vs. uniprot
Match: D8LIU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU0_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 2.580e-95
Identity = 210/230 (91.30%), Postives = 213/230 (92.61%), Query Frame = 1 
Query:   46 FLDQPHLSAAALTADFDPPSARLQRNVSLPGALREGGGHGQGQGFVSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEETYNAEGDEMYFTPQHGTGGXXXXXXRGTGFSFPAEGGGAGSGGSIYVTPRSTPRHNEGGVSVDRGESRREAYAHLDSSRERDGFEVGIDRRQSGLTPLGGSFRGGXXXXXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR 735
            FLDQPHLSAAALTAD DPPSARLQRNVSLPGALREGGGHGQGQGFVSTP XXXXXXXXXXXXXXXXXXXXXXXXXXX   S EE YNAEGDEMYFTPQHGTGG XXXX RGTGFSFPA G GAGSGGSIYVTPRSTPRHNEGG+SVDRGESRREAYAHL+SSRERDGFEV I+RRQSGLT LGGSFRG    XXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR
Sbjct:   15 FLDQPHLSAAALTADLDPPSARLQRNVSLPGALREGGGHGQGQGFVSTPPXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCSVEEAYNAEGDEMYFTPQHGTGGTXXXXKRGTGFSFPAGGEGAGSGGSIYVTPRSTPRHNEGGMSVDRGESRREAYAHLESSRERDGFEVEIERRQSGLTSLGGSFRG----XXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR 240
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BLAST of mRNA_Ecto-sp13_S_contig89.20397.1 vs. uniprot
Match: A0A6H5JKD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD5_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.880e-77
Identity = 209/230 (90.87%), Postives = 211/230 (91.74%), Query Frame = 1 
Query:   46 FLDQPHLSAAALTADFDPPSARLQRNVSLPGALREGGGHGQGQGFVSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEETYNAEGDEMYFTPQHGTGGXXXXXXRGTGFSFPAEGGGAGSGGSIYVTPRSTPRHNEGGVSVDRGESRREAYAHLDSSRERDGFEVGIDRRQSGLTPLGGSFRGGXXXXXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR 735
            FLDQPHLSAAALTADFDPPSARL RNVSLPGALREGG HGQGQ FVSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GEETYNAEGDEMYFTP+HGTGGXXXXXX  TGFSFPA        G IYVTPRSTPRHNEGGVS DRGESRREAYAHL+SSRERDGFEVGIDRRQSGLT LGGSFRG XXXXXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR
Sbjct:  953 FLDQPHLSAAALTADFDPPSARLHRNVSLPGALREGGRHGQGQEFVSTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGEETYNAEGDEMYFTPRHGTGGXXXXXXXXTGFSFPAXXXXXXXXG-IYVTPRSTPRHNEGGVSADRGESRREAYAHLESSRERDGFEVGIDRRQSGLTSLGGSFRG-XXXXXXXXXXXXXXXXXXXXXXXAGPNHGAAGAAWPLDTGR 1180
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig89.20397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIU0_ECTSI2.580e-9591.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKD5_9PHAE1.880e-7790.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig89contigEcto-sp13_S_contig89:2263..4040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size738
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_001520.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.847709-CDS-Ecto-sp13_S_contig89:2262..24781681464161.847709-CDS-Ecto-sp13_S_contig89:2262..2478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89 2263..2478 -
1681464161.8670907-CDS-Ecto-sp13_S_contig89:2792..30011681464161.8670907-CDS-Ecto-sp13_S_contig89:2792..3001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89 2793..3001 -
1681464161.8798323-CDS-Ecto-sp13_S_contig89:3727..40401681464161.8798323-CDS-Ecto-sp13_S_contig89:3727..4040Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig89 3728..4040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig89.20397.1prot_Ecto-sp13_S_contig89.20397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig89 2263..4040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig89.20397.1

>prot_Ecto-sp13_S_contig89.20397.1 ID=prot_Ecto-sp13_S_contig89.20397.1|Name=mRNA_Ecto-sp13_S_contig89.20397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MGAAAATAAAAAGGGFLDQPHLSAAALTADFDPPSARLQRNVSLPGALRE
GGGHGQGQGFVSTPPPSSGVEGGGGYLTTVPTPPLGGGGGRRGGGSGEET
YNAEGDEMYFTPQHGTGGTPQHGKRGTGFSFPAEGGGAGSGGSIYVTPRS
TPRHNEGGVSVDRGESRREAYAHLDSSRERDGFEVGIDRRQSGLTPLGGS
FRGGGGGGRGGALPASTPAAAAAAATAAGPNHGAAGAAWPLDTGR*
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mRNA from alignment at Ecto-sp13_S_contig89:2263..4040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig89.20397.1 ID=mRNA_Ecto-sp13_S_contig89.20397.1|Name=mRNA_Ecto-sp13_S_contig89.20397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89:2263..4040- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCGGCGGCCGCGACGGCGGCGGCGGCGGCTGGGGGGGGGTTCCT
GGATCAGCCCCACCTATCAGCAGCAGCCTTGACGGCGGACTTCGACCCAC
CCTCCGCGCGATTGCAGCGAAACGTGTCACTGCCCGGCGCACTGCGGGAG
GGCGGGGGGCACGGTCAAGGGCAAGGGTTCGTGTCGACCCCGCCGCCCAG
CTCCGGTGTGGAAGGGGGTGGGGGATACTTAACGACCGTTCCGACCCCTC
CGTTGGGTGGGGGTGGGGGCAGGAGGGGGGGGGGCTCGGGGGAAGAGACT
TACAATGCGGAAGGTGGGCATTTTTCCGAGCGCAGTGTAGATAGAATAGC
ACTGCGGGAAGGTTGGATAGGAGGGCCTACAGAGAGGGAACGTTTCTCTG
TGGCCACGGGTTATAGCCCCTACCCGGCAGAAGTGCTGTTGGCTGTGATT
CACGGTAATGACAAAAGTAACTGGTGTCATTACCCATCACCCACCCTCGG
GGGTTGCGTACTTCTGGGGTCTGTGTTGAGGTTTGGACATTAGTCTAATG
TACATCTGCCACCTCTTCAACCCGCTTGACATGTGTTGGTGGGCGAGAGT
CGAAAGCAAGTCTCGTTTTCAATAGCGCAGCATGTTGAGGCCATGCCGTG
ATTCGGTTAGAAAACCGTCCGTTCCCGTTCACGACTACCGGCTGTTTTCA
GTGGGTCTTGTATGTACGTGACTTGACGGTCGCAATCGCGGTGCTTTTCG
CTTCGTCTTGGGCAAGAAATGGAAAAACGAAATCGAGTGAAGGGTGGCGT
AGCCATATTAAGTTCGTCTGGTCCCACGCACAAGTAGGCCGGACAACCGA
AGCAGGCGAAGCGAAACACGGCCCCCGGCTGTGACCTGTGGCAGTCTAGC
CACTCCTTTACTTACGAGATACACCAACCCTGGGCTGCCCGTAGTGGCCA
CCAAAAAGAACAAGAGCGTGTATGCAGAGGATACCCCATGGTAAATAATT
CCCTTTCTCCACTGCGCCTTTTTTTTTTCCTTCCTGCAGGGGACGAAATG
TATTTCACTCCGCAGCATGGAACCGGAGGCACCCCACAGCACGGCAAACG
AGGGACGGGCTTCAGTTTCCCCGCGGAAGGGGGGGGCGCGGGTAGCGGCG
GAAGTATTTATGTAACTCCCCGATCAACGCCGAGGCACAACGAGGGAGGC
GTGTCTGTGGACAGAGGGGAGAGCAGGAGAGAGGCTTACGCGCACCTGGT
GCGTCCNNNNNNNNNNGGGGGGGGTGGTGGAGAGGGGGGGGGGGAGGAGG
GGGGCTTCCCCCCCCCCGGGGGGCCCCCCCCCCCCCCCCCCCGCCGTTTT
CCCCCCACGTGGTCGTTTTGATGGTAATCGTTGGCTACGGGCGGACCCCC
AGCGCGTGCAAGCTCCTTGATCATGGTTACCTCCCCGACTGTTTGTTTGT
CGTCATCACCGTGTGTGTTTCTTGTGTCCTGCTGTGCTTTCAGTGCGCCG
TGGCGCATGGTACGTTTTTCCAGCATCCTCCCTCCAATAACAACCGTGTG
TGTCCGCAGCAGGATTCGTCGCGAGAACGAGACGGTTTCGAGGTGGGGAT
CGACCGAAGACAGAGCGGCTTGACGCCACTGGGCGGAAGCTTCCGAGGAG
GAGGAGGAGGAGGAAGAGGAGGAGCCCTGCCGGCGTCTACCCCTGCTGCC
GCTGCCGCCGCTGCTACCGCTGCGGGTCCCAACCACGGGGCAGCGGGGGC
GGCGTGGCCTCTCGATACCGGACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig89:2263..4040-

>mRNA_Ecto-sp13_S_contig89.20397.1 ID=mRNA_Ecto-sp13_S_contig89.20397.1|Name=mRNA_Ecto-sp13_S_contig89.20397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig89:2263..4040- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGCGGCGGCCGCGACGGCGGCGGCGGCGGCTGGGGGGGGGTTCCT
GGATCAGCCCCACCTATCAGCAGCAGCCTTGACGGCGGACTTCGACCCAC
CCTCCGCGCGATTGCAGCGAAACGTGTCACTGCCCGGCGCACTGCGGGAG
GGCGGGGGGCACGGTCAAGGGCAAGGGTTCGTGTCGACCCCGCCGCCCAG
CTCCGGTGTGGAAGGGGGTGGGGGATACTTAACGACCGTTCCGACCCCTC
CGTTGGGTGGGGGTGGGGGCAGGAGGGGGGGGGGCTCGGGGGAAGAGACT
TACAATGCGGAAGGGGACGAAATGTATTTCACTCCGCAGCATGGAACCGG
AGGCACCCCACAGCACGGCAAACGAGGGACGGGCTTCAGTTTCCCCGCGG
AAGGGGGGGGCGCGGGTAGCGGCGGAAGTATTTATGTAACTCCCCGATCA
ACGCCGAGGCACAACGAGGGAGGCGTGTCTGTGGACAGAGGGGAGAGCAG
GAGAGAGGCTTACGCGCACCTGGATTCGTCGCGAGAACGAGACGGTTTCG
AGGTGGGGATCGACCGAAGACAGAGCGGCTTGACGCCACTGGGCGGAAGC
TTCCGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGCCCTGCCGGCGTCTAC
CCCTGCTGCCGCTGCCGCCGCTGCTACCGCTGCGGGTCCCAACCACGGGG
CAGCGGGGGCGGCGTGGCCTCTCGATACCGGACGGTGA
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