mRNA_Ecto-sp13_S_contig888.20373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig888.20373.1
Unique NamemRNA_Ecto-sp13_S_contig888.20373.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig888.20373.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 2.610e-96
Identity = 157/171 (91.81%), Postives = 160/171 (93.57%), Query Frame = 2 
Query:   68 MTRTPSILAALAAGQLFGVGNAFHVYPPPTLSSRGGHAEKVPTRPFAYLPAARCGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDENLGSKRRRLDPSSETTSGSSESTGGRGASETALGVETDWREEIRLASQLGD 580
            MTR P +LAALAAGQ+FGV NAFHVYPPPTLSSRGGH E  PTRPF+ LPAA CGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDE LGSKRRRLDPSSETTSGS ESTGGRGASETALGVETDWREEIRLASQL D
Sbjct:    1 MTRKPLVLAALAAGQVFGVANAFHVYPPPTLSSRGGHVEIAPTRPFSCLPAASCGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTTSGHDLRLDEKLGSKRRRLDPSSETTSGSLESTGGRGASETALGVETDWREEIRLASQLPD 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig888.20373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI2.610e-9691.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig888contigEcto-sp13_S_contig888:15833..20407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1152
Hectar predicted targeting categorychloroplast
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001730.1
Cds size621
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig888.20373.1prot_Ecto-sp13_S_contig888.20373.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig888 16297..20340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464159.9025702-UTR-Ecto-sp13_S_contig888:15832..162961681464159.9025702-UTR-Ecto-sp13_S_contig888:15832..16296Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig888 15833..16296 -
1681464159.964371-UTR-Ecto-sp13_S_contig888:20340..204071681464159.964371-UTR-Ecto-sp13_S_contig888:20340..20407Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig888 20341..20407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464159.913912-CDS-Ecto-sp13_S_contig888:16296..164111681464159.913912-CDS-Ecto-sp13_S_contig888:16296..16411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig888 16297..16411 -
1681464159.924948-CDS-Ecto-sp13_S_contig888:16693..168641681464159.924948-CDS-Ecto-sp13_S_contig888:16693..16864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig888 16694..16864 -
1681464159.935987-CDS-Ecto-sp13_S_contig888:17540..176311681464159.935987-CDS-Ecto-sp13_S_contig888:17540..17631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig888 17541..17631 -
1681464159.9541788-CDS-Ecto-sp13_S_contig888:20096..203401681464159.9541788-CDS-Ecto-sp13_S_contig888:20096..20340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig888 20097..20340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig888.20373.1

>prot_Ecto-sp13_S_contig888.20373.1 ID=prot_Ecto-sp13_S_contig888.20373.1|Name=mRNA_Ecto-sp13_S_contig888.20373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
MTRTPSILAALAAGQLFGVGNAFHVYPPPTLSSRGGHAEKVPTRPFAYLP
AARCGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLA
GAFKLADYRTTSGHDLRLDENLGSKRRRLDPSSETTSGSSESTGGRGASE
TALGVETDWREEIRLASQLGDAPKARRQECVHRLPRRRSCTLSAWLRWLR
LRPAWE*
back to top

mRNA from alignment at Ecto-sp13_S_contig888:15833..20407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig888.20373.1 ID=mRNA_Ecto-sp13_S_contig888.20373.1|Name=mRNA_Ecto-sp13_S_contig888.20373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig888:15833..20407- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCATCATCCCCGGTCCCGACAGTCCCGCCGATGTACTGTCTGGCCAC
ATCCTGGAATAGAGAACATGACGAGGACGCCATCTATCCTCGCGGCCTTG
GCTGCAGGTCAGCTCTTTGGTGTCGGGAACGCCTTTCACGTCTACCCACC
TCCAACCCTGAGCAGCCGCGGCGGACATGCAGAGAAAGTGCCCACACGGC
CCTTCGCCTATCTGCCTGCTGCTAGATGCGGTGCACATCGCCGGCGATCA
TGCTGTGGCAGGCGAGAGCTTCAGCTAGCGTTGGAGAGTGAAGCGCTGGC
GGTAGGAGCAGGTGGGACAGACGCAATGTTGAGGAAAGCGAGCGTCAAGT
AGCCGGGCATTGTCGTAAAAACTGCCATTGAGATACTGTATGGAGATGGG
CGAGCACAGCAGCATTAGTTCGGCGCGACCTTCCCCACCCCTGCAGTGGT
GTAGACTCAATAGTGTGTTTCAAGAGACGACACACTAATCGCGCCAGCAA
ATAATGGCCGAAGAACAGCGAACATTGGTGTACGATTGCAATATGAGCTT
GGGGACAATGGCAGGATTACCGGTTAACGCCGGTGAAGGGTAGCAAAACG
TCCCTGACTCACTAGCTCTGACAGCAACCCTACCGGCCGTTTTCGAGCAA
AGCCACCACCCGCCATTCTTTAGCAAACCTTACGATTTGCAAGGTTGATG
CACATCTCGGCGTTCTTTACTGGGGACCAGTTAGTCGGGTTTGCGAGGGC
ATAGAATACAACATGGCGTGCGGTGTATGTTATACTGGACGGAAGGCGAG
CAAAGCTCTTCGACACAGACAGCGCCGCCGCGGCATAAGAATTTACCTCG
AGTTTTAGGTATGGGTTCAAGGGATTTTACCCAGGGCAAAGGGGATCGAT
AAGGCGGTGCCGTCGCGATTCTGTCGTTCTCGCGCCGCGCTGGGTATATC
TCCTGCCTAGCACCATCCGCGGGCCGATATCTGATCTGCGTCACCGCATG
CTGCTTGTCTACGTGTCTACTTGACCGTGTTACCGACACAGAAGTTTATG
AAGTACTGCTTTGCCTCTTGTCCTCTTGTTCCACCCAGCAGCTAGGGTTT
GCGCTCAACCTGATGCTGGCGTTGACACGCTGGGTCGAGCACTGTTTGTG
TGCTGCTGTTTCCTCAGCGCTCAAAGTCATTGTGCATGTCTGAGGGCGCT
GTCTGTGTGAAGCTTGTTATTTTGTTTTAGGCGGGCACGCGTTTCGGGTT
GAAGCAGAAATGGTAACGGGTGATGGGTATGGGCCGAAGAAACAATGACT
TCAAGGCGTACAGGTCTCCCGCCCCCAGTCCCATGGAGATCGTCTCGACG
ACGTCACAAGGATTTGAGGAAGAAATACAACAGTCACATAGTAGCTAAGA
TAACGTGACAGTACGTACATCCTCAAAAGATATGTCGTAGCCAACGAGAG
ATGTGAGGGGCAATAAAAGTGCATCGAAGCTGCGATTGGTACCGCCCGAC
TGCACAAGATATAGATTTCTCCGCGTCTGAACGACGGATTGACTGGATCA
GCAGTTCCGTGCTCGCTTATCATCGTTCGCTCGAGACGGGGCGGTTGGCG
TGAGTCCTCAGTGCTGAGCGTCCGCAAGATGTGGCTTGTCACCGGAACGG
GTAAAGATCCCTTTCGTCAACACCACGTTTGCCGTAGACCGGCGGCATTG
CGATGCACAGCGATTTCCGCAGGTACACATCAGCATGTGCTCAGACGGCC
CGTGCTAAGTAGGGTTGAAAGCCGTCAGAAATTATCGTGATATCGTAGCG
TAGGCAGTCGTACTTGTGCTACCTTTCCCTCGAACGGAGCAGCGGTTCCG
TAATTCCGCACTAACAGCGAGATGCCACGGAACACCGACAAGAGAGGAGA
AGTCTGCCCCGAAAGATAAATTCAGCGATAGCGAACATGCTGCAACCGTG
AAGCCCTCGGAAGGCTTGAGACTATCCAAGAAGAATCCTGTCCGGTGCCG
CCCCTGTAGAACAACTCAGATGGGGGCCACAAGACAAAGGCGTGAAGGCC
ACTTGTGTATTCTCTGATGCCGGCGGCTAGGGGACACCGCGGACACAGAG
GGCTCCCGCGAATGTCGATTTTCCTCGACGCTCCCTCGCATTCTGCGGTA
GGGTCTATCGCTCTTGCGATCGTCCATCTTCTTGTGCTGCGTGGTAATGT
GAAAGGGCTACCTCAAGTCTCTCACAAATCAAGCGCCCGCCGAGGGAGTC
GAAGGGCGTTCTTGACTGTTTCGCGCGACAATCGTTTTTTTATGGCGGTG
GCAGCACAGAAGTTGTGACCGCGAAAGGAACAAAGCGGCGATTTGAACAC
TGTGCGTGGACTCGCCACACATGCAACAGTAAACGCTCGCAATGGCGGAC
CAACACGACCGGCAACATAACTTTCCTGCAGGAACAATGTTTTCCTCCAG
TGCAGTTTTAGAAGGGTGGAAACAATATCGGCTAGAGCATCACCATACTT
GTACACTGCTGTTCCTCGATAGGGGAATGGTTTCACCAGTGTATGATTGC
CTTTGTCATCTTCTCGGCAGCTAGGCCTACCAGCAGTAGAGCTGTGGATG
GCGCGGTAGCTTGATTTGCGGTCGTCATCCGACAACACTTTGTCACCCCC
CTTTTCTCAAGACCGCCCCTCACTTGCTCCCTCCTCTTTCCCCGGCCTCG
CTTCTTGCTTGGCTGCATTTACCCGTATGTATTTTTTTTTTGTTTCGCTG
TGTCGTTTGTTGGTGCTTGAGGACAGCCGTGATCGCGGGGGCAGCAATCA
TCGGTGCAGGGCGAGGGTTGTCAACGCTCGCCGGCGCGTTCAAGCTCGCC
GACTACCGAACGACGAGGTAAGAGCGAAGCAATGTTGGCCTGTTCGACAC
TCCCTAGACACCATCGATTTACCGTGCAGACGAGGGTATGCGTGTAGTAT
GCGAAGCCTCGTTCTCTCGAGAAAGGATTAAAAGATCATGTCGAAACAAA
GTGAAGCAGTAGTCATTGTACAATAGTCATGGGAAAAGACAGCGTTCTAG
AGTACGTTCCGCGCAGAGCGGGTACCGCGGCTGGGTGTTATGTCTTCTCC
CGTCTCTTCACTTGGTCCTGCACTGCGTAAGCACGTGGTCTAGGACCGAC
CCCTTCCCAGCCTATTCGTTGTAAGGTGCTTTGACCGTGGCACATCCGCA
GCTCTAAAGTCGCCTCTTTCCACAACACTTCTCTTCTGTAAGGCAATTTT
GACCACGTGCCGTATTGACGGACATGTTGCTATGCCACAAATGTCTAATG
TCTTCCGCGGTTTTGTATTGTCGACAGTCCCACTCGCCCCACCCGACCGC
GGGCCCGTCGCTACTCTGGTTGCGTTCGTGCGCGGGAAGCAACTGACAGC
GGAAAACCATATATATCCACCGTACAGAAATGTGTCTGCTTTTGGCCTGT
TGTTTTGGGCACCTGTGGTATAATACTGTCATTTGTTTGACCTCTTCTGT
TGTGGTGTTGTCCTTCCTTGCCCTTGTCTCTCGTGCTTTCCAGCGGCCAC
GATCTGCGCCTGGACGAAAATCTTGGGTCCAAGCGCCGTCGACTTGACCC
CTCCTCGGAAACGACTTCCGGTTCCTCAGAGAGTACGGGTGGAAGAGGGG
CTTCTGAGACGGCGCTGGGAGTGGAGACCGACTGGCGAGAAGAGATCCGA
CTGGCTTCGCAGCTGCCGGATGATGGTGTTGTGTTCGGCGGTTCAGGGGG
TATAGAAATAGATGGTGGACCTTGAGGTGGAGCGGCAAGGGGGCACTGTG
AAGGAAAGAGTTCTCGAGTTTCCGTGCTGATTAGAGGCATCTAGCCGGTT
GTGTGAGTTGAAACATACCTCTGTACGGTAAGGCCTGTGCGGTACATCAG
GCAGCTCAGCGATGCAGTCGTTGGTAAGGCATGAAGTTGTTTTGCGGATT
GTTGATTGTACGTGGTCTAGTGTTGAGGAAAGCATGTTACTTACAGAGGT
GATGCACCGAAGGCTCGTAGACAAGAATGCGTACACCGACTTCCTCGCCG
TCGATCCTGCACGCTTTCTGCTTGGCTGAGATGGTTACGTTTGCGTCCAG
CTTGGGAGTGAGGCTAATTGTTCAGGTGAAAAATGAACGGTCCAAGGGTG
TAGAAGGGTGGGGCCAAGACAGCAATGTCTGTCACATGCGTTCTTGTCTA
TCTCTCATTTAGTGTTGATACTGATCAGTTTGAGTTGATGGCTTCACGAT
AATCATGCCGTGGGCACCTCGGCTCGAGAAGCGGTGTCAACTTCTTGTCG
TATCCAACTCTACTCGCACCAGCAATCGCGGTATCTTGAGTCCCGCGTGT
TGCCTACAACTGGTTATTATGGCTGTAATACCCGCAATTTGGGGGGGTCC
GAGTTGACGGTTTGCTTTGGACGAGAAGATTCCCAGGTCCAGCTTGTTCT
ACTTTCTATCTTCTTTGCGAACAACACGATGACCTATGTAGCATACATCG
GAGTGCAGCACGGTGCTGCGATTTGTCCAGGTGCTGTGGGCCTCCCCAGA
GCAAGGACCACCCTCGTGATGATGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig888:15833..20407-

>mRNA_Ecto-sp13_S_contig888.20373.1 ID=mRNA_Ecto-sp13_S_contig888.20373.1|Name=mRNA_Ecto-sp13_S_contig888.20373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig888:15833..20407- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGACGCCATCTATCCTCGCGGCCTTGGCTGCAGGTCAGCTCTT
TGGTGTCGGGAACGCCTTTCACGTCTACCCACCTCCAACCCTGAGCAGCC
GCGGCGGACATGCAGAGAAAGTGCCCACACGGCCCTTCGCCTATCTGCCT
GCTGCTAGATGCGGTGCACATCGCCGGCGATCATGCTGTGGCAGGCGAGA
GCTTCAGCTAGCGTTGGAGAGTGAAGCGCTGGCGGTAGGAGCAGCCGTGA
TCGCGGGGGCAGCAATCATCGGTGCAGGGCGAGGGTTGTCAACGCTCGCC
GGCGCGTTCAAGCTCGCCGACTACCGAACGACGAGCGGCCACGATCTGCG
CCTGGACGAAAATCTTGGGTCCAAGCGCCGTCGACTTGACCCCTCCTCGG
AAACGACTTCCGGTTCCTCAGAGAGTACGGGTGGAAGAGGGGCTTCTGAG
ACGGCGCTGGGAGTGGAGACCGACTGGCGAGAAGAGATCCGACTGGCTTC
GCAGCTAGGTGATGCACCGAAGGCTCGTAGACAAGAATGCGTACACCGAC
TTCCTCGCCGTCGATCCTGCACGCTTTCTGCTTGGCTGAGATGGTTACGT
TTGCGTCCAGCTTGGGAGTGA
back to top