mRNA_Ecto-sp13_S_contig8874.20366.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8874.20366.1
Unique NamemRNA_Ecto-sp13_S_contig8874.20366.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8874.20366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8874contigEcto-sp13_S_contig8874:1258..1805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size456
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464159.2706704-UTR-Ecto-sp13_S_contig8874:1257..13201681464159.2706704-UTR-Ecto-sp13_S_contig8874:1257..1320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8874 1258..1320 -
1681464159.298167-UTR-Ecto-sp13_S_contig8874:1697..18051681464159.298167-UTR-Ecto-sp13_S_contig8874:1697..1805Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8874 1698..1805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464159.279821-CDS-Ecto-sp13_S_contig8874:1320..14611681464159.279821-CDS-Ecto-sp13_S_contig8874:1320..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8874 1321..1461 -
1681464159.2886748-CDS-Ecto-sp13_S_contig8874:1553..16971681464159.2886748-CDS-Ecto-sp13_S_contig8874:1553..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8874 1554..1697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8874.20366.1prot_Ecto-sp13_S_contig8874.20366.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8874 1321..1697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8874.20366.1

>prot_Ecto-sp13_S_contig8874.20366.1 ID=prot_Ecto-sp13_S_contig8874.20366.1|Name=mRNA_Ecto-sp13_S_contig8874.20366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MRGMKRAIPTARVGIFKEIKKSTDGRRSGPGIRPHIKAGRPAPRHGNRRP
LLWYHKVLPLLRNAQRSGATQNFPRRPQYSSPTSKLFFTPCIVP*
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mRNA from alignment at Ecto-sp13_S_contig8874:1258..1805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8874.20366.1 ID=mRNA_Ecto-sp13_S_contig8874.20366.1|Name=mRNA_Ecto-sp13_S_contig8874.20366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=548bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8874:1258..1805- (Ectocarpus species13 EcNAP12_S_4_19m)
CCATCACGCTCGCACCGTCAACATAAAAACTACGCCCGTGGTGGGTGAGT
GGAAACTGGTCATCAAAGGAGCCGGGGAAATCATGGAACAGCTCGTACAG
TTGGGGGTATGCGGGGGATGAAACGAGCGATACCTACGGCCCGTGTTGGA
ATCTTCAAAGAGATAAAAAAATCTACAGATGGGCGTAGAAGTGGTCCCGG
CATAAGGCCGCACATCAAGGCCGGTCGCCCTGCACCACGACATGGAAATC
GCGTGACACAGGTGGAATAATGAAACTGATCTCATACTCCGAATTGTATC
GGGTGCTTGGTATAAGGCCGATCAAAATTGTGGCCTTCACTGAGCGACCA
CTACTGTGGTATCACAAGGTCTTGCCTCTCCTACGGAACGCACAGCGATC
GGGGGCCACACAGAACTTCCCGAGACGACCTCAGTACTCCTCGCCAACTT
CGAAGCTGTTTTTTACACCGTGTATTGTACCATAAAAAAAATCGCCACTC
AGACCGATCAAGCGCTATCTACAGACTGCACCAATGCATTTTTTCTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8874:1258..1805-

>mRNA_Ecto-sp13_S_contig8874.20366.1 ID=mRNA_Ecto-sp13_S_contig8874.20366.1|Name=mRNA_Ecto-sp13_S_contig8874.20366.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8874:1258..1805- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGGGATGAAACGAGCGATACCTACGGCCCGTGTTGGAATCTTCAA
AGAGATAAAAAAATCTACAGATGGGCGTAGAAGTGGTCCCGGCATAAGGC
CGCACATCAAGGCCGGTCGCCCTGCACCACGACATGGAAATCGCCGACCA
CTACTGTGGTATCACAAGGTCTTGCCTCTCCTACGGAACGCACAGCGATC
GGGGGCCACACAGAACTTCCCGAGACGACCTCAGTACTCCTCGCCAACTT
CGAAGCTGTTTTTTACACCGTGTATTGTACCATAA
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