mRNA_Ecto-sp13_S_contig886.20354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig886.20354.1
Unique NamemRNA_Ecto-sp13_S_contig886.20354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: D7FUP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP5_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 3.720e-99
Identity = 193/233 (82.83%), Postives = 204/233 (87.55%), Query Frame = 1 
Query:    1 MSQHQHRLAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRRAAVFDVMEEEDGENVDPRQAIVDLVEHTHLTSTCLPRCVCLLSKLRKATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLMFASQSDIGKAKSEPENKKTAFKSSAFHLILPFMAYFKTTCLTTIDCKEHSLLKMVGYLWGEWDPERPITQTELSSKFRLSA 699
            MSQ+QHRLAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRRAAVFD  EE+  ENVDPRQA+ DLVE                SKLRKATSKQAVASSIPEAADAMLDAM+VMEWCPALRSTVLCRLAKDEGLMFASQSD GKA +EPENKKTAFKS+AFHLILPFMAYFK  CLTTIDC+EHSLLK+VG LWGEWDPERPITQTELS +  +S+
Sbjct:    1 MSQNQHRLAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRRAAVFDTEEED--ENVDPRQAVADLVE----------------SKLRKATSKQAVASSIPEAADAMLDAMHVMEWCPALRSTVLCRLAKDEGLMFASQSDFGKANAEPENKKTAFKSAAFHLILPFMAYFKGICLTTIDCREHSLLKIVGNLWGEWDPERPITQTELSKEVAVSS 215
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5K044_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K044_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 5.890e-45
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:  451 LMFASQSDIGKAKSEPENKKTAFKSSAFHLILPFMAYFKTTCLTTIDCKEHSLLKMVGYLWGEWDPERPITQTELSSKFRL 693
            L FASQSDIGKAK EPENKKTAFKS+ FHLILPFMAYFK  CLTTIDC+EHSLLKMVGYLWGEWDPERPITQTELSSKFR 
Sbjct:    4 LQFASQSDIGKAKVEPENKKTAFKSATFHLILPFMAYFKGICLTTIDCREHSLLKMVGYLWGEWDPERPITQTELSSKFRF 84
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5JCS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS8_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 3.000e-40
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:  454 MFASQSDIGKAKSEPENKKTAFKSSAFHLILPFMAYFKTTCLTTIDCKEHSLLKMVGYLWGEWDPERPITQTELSSK 684
            MFASQSD+GKAK+EPENKKTAFKS+AFHLILPFMAYFK  CLTTIDC+EHSLLKMVGY+WGEWD ERPITQTELS +
Sbjct:    1 MFASQSDLGKAKAEPENKKTAFKSAAFHLILPFMAYFKGICLTTIDCREHSLLKMVGYMWGEWDQERPITQTELSKE 77
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5L3F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F5_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.230e-30
Identity = 61/89 (68.54%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:  370 MLDAMNVMEWCPALRSTVLCRLAKDEGLMFASQSDIGKAKSEPENKKT---AFKSSAFHLILPFMAYFKTTCLTTIDCKEHSLLKMVGY 627
            MLDAM+VMEWCPALRS VLCRLAK +G+M    +   K  + P+  K    AFKS+AFHLILPFMAYFK  CLTTIDC EHSLLKMVGY
Sbjct:    1 MLDAMHVMEWCPALRSAVLCRLAKAKGVMVRDYTS--KHPTNPKRWKEQEDAFKSAAFHLILPFMAYFKGVCLTTIDCSEHSLLKMVGY 87
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: D7FSA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.250e-30
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  370 MLDAMNVMEWCPALRSTVLCRLAKDEGLMFASQSDIGKAKSEPENKKTAFKSSAFHLILPFMAYFKTTCLTTIDCKEHSLLKMVGYLWGEWDPERPITQTELSSK 684
            ML A++  EWC  LR  V+ RLA + G M AS++DI K K+E E++K ++KSSAFHLILPFMAYFK   LT I C EHSLL MVG++WG +D ER I+  E+  +
Sbjct:    1 MLRAIDENEWCSDLRGAVMLRLASESGFMLASRADIDKGKTERESRKVSYKSSAFHLILPFMAYFKDLRLTEIKCDEHSLLTMVGHMWGAYDEERGISCAEMDKE 105
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: D7FWX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.000e-26
Identity = 63/87 (72.41%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:  196 MEEEDGENVDPRQAIVDLVEHTHLTSTCLPRCVCLLSKLRKATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 456
            MEEED ENVDPRQA+ DLVE                     ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM
Sbjct:    1 MEEED-ENVDPRQAVADLVE---------------------ATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEGLM 65
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5JAA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.020e-21
Identity = 96/133 (72.18%), Postives = 100/133 (75.19%), Query Frame = 1 
Query:    1 MSQHQHRLAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRRAAVFDVMEEEDGENVDPRQAIVDLVEHTHLTSTCLPRCVCLLSKLRKATSKQAVASSIPEAADAMLDAMNVMEW 399
            MS +QHRL PSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSR A +FDVM E D  NVD RQA+ DLVE                     ATSKQAVAS IPEAADAMLDAM+VMEW
Sbjct:    1 MSHNQHRLTPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRHAGIFDVMGEGDN-NVDLRQAVADLVE---------------------ATSKQAVASCIPEAADAMLDAMHVMEW 111
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5JZT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.700e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:  253 EHTHLTSTCLPRCVCLLSKLRKATSKQAVASSIPEAADAMLDAMNVMEW 399
            +HTHLTSTCLPR VCLLS  RKATSKQAVAS IPEAADAMLDAM+VMEW
Sbjct:   30 QHTHLTSTCLPRRVCLLSNSRKATSKQAVASCIPEAADAMLDAMHVMEW 78
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5LBE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBE3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.110e-15
Identity = 62/85 (72.94%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 MSQHQHRLAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHTNGSGIGKNRSRRAAVFDVMEEEDGENVDPRQAIVDLVE 255
            MSQ+QHRL PSSS           XXXXXXXXXXXXXXXX    RHTNGSGIGKNRSRRAA+FDVMEEED ENVDP+QA+ D+VE
Sbjct:   35 MSQNQHRLTPSSSSSQMRPARDISXXXXXXXXXXXXXXXXCTKRRHTNGSGIGKNRSRRAAIFDVMEEED-ENVDPQQAVADVVE 118
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BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Match: A0A6H5JXU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-11
Identity = 40/76 (52.63%), Postives = 43/76 (56.58%), Query Frame = -2 
Query:  255 MTFMASNMASAASGIEEATACFDV------------------------------AFRNFDSKQTHRGRHVDVRCVC 392
            MT MASNMASAASGI+EATACFDV                              AFR F++KQT RGRHVDVRCVC
Sbjct:    1 MTCMASNMASAASGIQEATACFDVXAGHHSMXXXXXXXXXXXXXXXXXXXXXXVAFREFENKQTRRGRHVDVRCVC 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig886.20354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FUP5_ECTSI3.720e-9982.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K044_9PHAE5.890e-4590.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS8_9PHAE3.000e-4087.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3F5_9PHAE2.230e-3068.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA8_ECTSI4.250e-3055.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWX0_ECTSI2.000e-2672.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAA9_9PHAE2.020e-2172.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT2_9PHAE5.700e-1887.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBE3_9PHAE7.110e-1572.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU5_9PHAE1.100e-1152.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig886contigEcto-sp13_S_contig886:4501..6799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size723
Hectar predicted targeting categoryother localisation
Exons3
Cds size723
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464158.120695-CDS-Ecto-sp13_S_contig886:4500..47671681464158.120695-CDS-Ecto-sp13_S_contig886:4500..4767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig886 4501..4767 -
1681464158.1331751-CDS-Ecto-sp13_S_contig886:5543..57441681464158.1331751-CDS-Ecto-sp13_S_contig886:5543..5744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig886 5544..5744 -
1681464158.1437728-CDS-Ecto-sp13_S_contig886:6544..67991681464158.1437728-CDS-Ecto-sp13_S_contig886:6544..6799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig886 6545..6799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig886.20354.1prot_Ecto-sp13_S_contig886.20354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig886 4501..6799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig886.20354.1

>prot_Ecto-sp13_S_contig886.20354.1 ID=prot_Ecto-sp13_S_contig886.20354.1|Name=mRNA_Ecto-sp13_S_contig886.20354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
MSQHQHRLAPSSSNSQRRPAHNSSSSGGGSSSSGGSSGSSNNKRRHTNGS
GIGKNRSRRAAVFDVMEEEDGENVDPRQAIVDLVEHTHLTSTCLPRCVCL
LSKLRKATSKQAVASSIPEAADAMLDAMNVMEWCPALRSTVLCRLAKDEG
LMFASQSDIGKAKSEPENKKTAFKSSAFHLILPFMAYFKTTCLTTIDCKE
HSLLKMVGYLWGEWDPERPITQTELSSKFRLSAMIRPRAF*
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mRNA from alignment at Ecto-sp13_S_contig886:4501..6799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig886.20354.1 ID=mRNA_Ecto-sp13_S_contig886.20354.1|Name=mRNA_Ecto-sp13_S_contig886.20354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2299bp|location=Sequence derived from alignment at Ecto-sp13_S_contig886:4501..6799- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAGCACCAGCACCGTCTCGCTCCGTCGTCGTCCAACTCGCAAAG
GAGGCCCGCCCACAACAGCTCTTCTTCCGGGGGAGGGTCGTCCTCCAGCG
GCGGTTCGAGCGGTTCTTCTAACAACAAGCGCCGCCACACCAACGGGTCC
GGCATCGGCAAGAACAGATCCCGGCGTGCTGCCGTCTTCGACGTCATGGA
AGAAGAGGACGGTGAGAACGTCGACCCCCGACAGGCCATCGTGGATTTAG
TGGAGGTGAGAACTCGGGCGTTGGAGCACACATCTCGCACATAGTCTCCG
ATTACTGTACAATAGTTATAGTCAAGTGCGTGTCGAGCTCTTGTCTCAGT
AGCATGCGTGGCTCGCTGCAGGCCACACGCTGACTCTTCATGAGCCAGGG
CCGAAGTCTGAAACCCCGACGTTCTCCTGCTGCTGTGGCCCACCGACCCC
CCTATGCATGTGGCATGATGTGCGACTGCCGGCCTTTCTTGTGTTCCTTC
TCCTATCTCAACCGCTAGCATCTGCGCCTCGTGTCCACACAACCCCTGTT
GGAAAAAGGTTCGAGAGACTCCATCTTCGAAAACGCAACAATTCAAATTC
CCAGATAGGGGCGGGAGTAGCAGCAGACCTACAATACAAAGACAAGACTC
GAAATACGTCCAGTACCCAGCCGGTTTTCCTCCACTCACTGAAAAGACTC
CACCACATCCCGTTCGACTGTGGGTATATCTCGAATGGGTAGTCTCTCTG
TGCGTGTATTTATTTCTCCTTAATAGAATTTTGATCCGTGTGCTGTGACA
CCCGCTGTGCTTCATTGTCGCCTGTTTGCCTGCGTTGGCACGCGCGTAGG
GGGTGGGAGGTTCAAGCACGGCTCTACATTTTAGTCGCCGACACTACTCT
CCTCTCCGTATTTCTTACCGCACAAGCCTCTGCTCCGCGAAACTCCGGTC
CTCACGAGATCAACAGGACCACTTCCACCCTATGTAGCAGTGCACAACCG
ACAAGTACCTGGTAATTGGTTTGCTGTCACACGGCCTCCCTCCCTTCATC
CACAGCACACGCACCTGACATCCACGTGCCTGCCCCGATGTGTCTGCTTG
CTGTCGAAATTGCGAAAGGCGACGTCGAAGCAAGCAGTTGCCTCTTCTAT
CCCTGAGGCCGCCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGT
GCCCGGCGCTACGTTCGACAGTGCTTTGCCGCCTGGCCAAGGACGAAGGC
CTGATGGTGAGAGAGTACACGTCAAAGCTTCCAACCAATCCGAAGCGTTT
GACGGAGGAAGGAGCCACAAGCAATTTGCGGTCCTGAGACGTGAATATCC
GTAGGTGGTCGGGCGAGGGTGTTCTCGAACGTAGATGTCGGATACGAAAG
CCCCCCGCACGTGGGCGTCGGGATTCATTTCGAAACCTTTTGTTGAATAA
CCGTAAACACACAAGCCACTCGGGTCGTAAGTTTGTGATTCCTGCGCGTG
CGATTTATATTTCTCGACGAAATATTTGGCAGTTTTGTTCGAGTTACCCG
CGACCAAGAGCTTGTATTGTAGACAGCGTGCACCTACGCATTTCACTGCT
GTAAACGATGGAGTATCCTTCCCACAACAAGAGGCTGATCCACAAGGATA
TTCGGAGTGTGCATGTAAAGCTTCCGTCCGCAAGGTTGGGGGTCGCGGGG
TTTGCCCGCCTTCGGATGACATGCACACACACTGACGTATCTGGCAGCCT
CATCGAAAATGCCTCGGCATGCATCCCGGGAAATCTGTTTCATGTCCCCG
CCCCAGTCATGGTGCATCCGCATTTAACCCCAGGATGGCCACCCACCCGA
AAATACAAAATTACGCACACTCACGTGCTTTTTTAGACGTTCTGAGCTCA
CATACATTTTGTATTTTGCTCGCGCACACCCGTAGTCCGGACGTGAACTT
TTTTCAGCAACGACTCTTCCATTTATCACTAAGCCAATGCCCCCACCTCA
CGCCCCGCCGCTTTTGCATACTTTCGCTCCAGTTCGCTTCCCAATCAGAT
ATTGGTAAGGCTAAGTCTGAACCAGAGAACAAGAAGACGGCGTTTAAAAG
CTCCGCCTTCCACCTCATTTTGCCGTTCATGGCGTACTTTAAGACCACCT
GCCTGACGACTATCGACTGCAAGGAGCACAGCCTGCTGAAGATGGTTGGG
TACTTGTGGGGTGAATGGGACCCGGAACGACCCATCACTCAGACCGAGCT
CTCGAGTAAGTTCCGATTATCCGCCATGATTCGGCCCCGCGCTTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig886:4501..6799-

>mRNA_Ecto-sp13_S_contig886.20354.1 ID=mRNA_Ecto-sp13_S_contig886.20354.1|Name=mRNA_Ecto-sp13_S_contig886.20354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig886:4501..6799- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAGCACCAGCACCGTCTCGCTCCGTCGTCGTCCAACTCGCAAAG
GAGGCCCGCCCACAACAGCTCTTCTTCCGGGGGAGGGTCGTCCTCCAGCG
GCGGTTCGAGCGGTTCTTCTAACAACAAGCGCCGCCACACCAACGGGTCC
GGCATCGGCAAGAACAGATCCCGGCGTGCTGCCGTCTTCGACGTCATGGA
AGAAGAGGACGGTGAGAACGTCGACCCCCGACAGGCCATCGTGGATTTAG
TGGAGCACACGCACCTGACATCCACGTGCCTGCCCCGATGTGTCTGCTTG
CTGTCGAAATTGCGAAAGGCGACGTCGAAGCAAGCAGTTGCCTCTTCTAT
CCCTGAGGCCGCCGACGCCATGTTGGACGCCATGAACGTCATGGAGTGGT
GCCCGGCGCTACGTTCGACAGTGCTTTGCCGCCTGGCCAAGGACGAAGGC
CTGATGTTCGCTTCCCAATCAGATATTGGTAAGGCTAAGTCTGAACCAGA
GAACAAGAAGACGGCGTTTAAAAGCTCCGCCTTCCACCTCATTTTGCCGT
TCATGGCGTACTTTAAGACCACCTGCCTGACGACTATCGACTGCAAGGAG
CACAGCCTGCTGAAGATGGTTGGGTACTTGTGGGGTGAATGGGACCCGGA
ACGACCCATCACTCAGACCGAGCTCTCGAGTAAGTTCCGATTATCCGCCA
TGATTCGGCCCCGCGCTTTTTAG
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