mRNA_Ecto-sp13_S_contig8858.20353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: D8LJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI) HSP 1 Score: 264 bits (674), Expect = 9.840e-80 Identity = 139/198 (70.20%), Postives = 150/198 (75.76%), Query Frame = 2
Query: 44 MASNVPETPTDLPPGWEAIRAGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVVDGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPE 637
MAS++P TDLPPGWEA RAGD+WVY+NHVTKTTQW PI+A PIP TN VARAQARIG PAEQPRDR++ SGASDA P D RG+ ED ESLP+GWE Q VDGRVLYIDHVNK TTYTKPT GADD RRS SGMS XXXXX DGGGEPPLP WTAEKTA GKV Y+NH H+TT WE PE
Sbjct: 1 MASDMP---TDLPPGWEAKRAGDQWVYLNHVTKTTQWEKPIVAKPIPPPVVTNPVARAQARIGSPAEQPRDRVIASGASDAPPPDQRGMSEDTESLPAGWERQFVDGRVLYIDHVNKATTYTKPTKGADDGRRRSASGMSXXXXXXXXXXXXXXXXXXXXDGGGEPPLPDEWTAEKTADGKVFYINHKHKTTSWERPE 195
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A6H5JUP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP4_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.710e-19 Identity = 71/240 (29.58%), Postives = 104/240 (43.33%), Query Frame = 2
Query: 74 DLPPGWEAIRAGDRWVYVNHVTKTTQWNAP--------IMADPIPRSYATNQVARAQARIGF-----------PAEQPRDRLMPSGASDASPLDHRGVPEDKES---------LPSGWESQVVDGRVLYIDHVNKVTTYTKPT----------------------TGADDEYRRSGSGMSGASGGYGSXXXXXAP--AALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPE 637
DLP WEA R VY+NH T+TTQW+ P A+P+ +++ + RA PA + RL + S++ P + P S LP+GWES+++DGRV+YIDH N+ T++ +P G + +G+ G+S G P A+ + G+ PLPPGW T G+V YVNH +TT W P+
Sbjct: 15 DLPQNWEARDVKGRIVYINHTTRTTQWSKPKFSTKKRAATAEPVASAHSKSASGRAXXXXXXXXXXXXXSAARPAAATQTRLGGASVSNSVPWSNLPAPAGVASRALTTVSSPLPAGWESKIIDGRVVYIDHTNQRTSFERPRGQAGGLPQQPRPLSARRQMGIDVGGELVPHSNGAENLGSSRGSHGSGHVIDPIYASNASSAAGDSPLPPGWGRSVTRQGEVYYVNHVSKTTTWSRPQ 254
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI0006D4FF7E (E3 ubiquitin-protein ligase Nedd-4 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4FF7E) HSP 1 Score: 90.9 bits (224), Expect = 2.030e-17 Identity = 65/197 (32.99%), Postives = 89/197 (45.18%), Query Frame = 2
Query: 77 LPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVA--RAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDK-----ESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
LPPGWEA + A R YVNH+ ++TQW+ P + SY + A Q R ++ + +G +S L + G E E LP GW Q+ +GRV +IDH K TT+ P TG + G+ L GD G PLP GW G++ +++HN RTT WE P L
Sbjct: 199 LPPGWEARQDANGRTYYVNHLARSTQWDRPSINTENSSSYQNLETAVTEFQRRFHISVDE-----VDTGRRRSSVLSNSGSEEQSNISGSEGLPEGWGLQIAPNGRVFFIDHNAKATTWVDPRTGRASAMPQQ----------TGNVTHIHNSIGLDGDLG---PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 377
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A1B6ER03_9HEMI (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6ER03_9HEMI) HSP 1 Score: 88.2 bits (217), Expect = 1.640e-16 Identity = 70/218 (32.11%), Postives = 93/218 (42.66%), Query Frame = 2
Query: 77 LPPGWEAIR-AGDRWVYVNHVTKTTQWNAP-------------------------IMADPIP---RSYATNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
LPPGWE + A R YVNHV +TTQW P I AD RS T+ V++A + P QPR P A +A + R P +E LP GW QV +GRV +IDH ++ TT+ P TG + A ++G PLP GW + G++ +++HN RTT WE P L
Sbjct: 59 LPPGWEERQDANGRTYYVNHVARTTQWERPTLLNESSVNTQNLESAATEFQRRFHISADDNESNRRSSVTSNVSQASEVVDSPT-QPRPESQPQPAEEAPTV--RTDPS-REGLPQGWSLQVAPNGRVFFIDHNSRATTWVDPRTGRASPMPNQREAANVA-------------RRVAGPDDELGPLPEGWEERVHSDGRIFFIDHNTRTTQWEDPRL 259
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI000BA80ECF (E3 ubiquitin-protein ligase NEDD4-like isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80ECF) HSP 1 Score: 87.8 bits (216), Expect = 2.360e-16 Identity = 73/235 (31.06%), Postives = 95/235 (40.43%), Query Frame = 2
Query: 23 GPWPEI*MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIP-----RSYATNQVARAQARIGFPAEQPRDRL----------------MPSGASDASPLDHRGVPE------DKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
GP + M S+ P LP GWE + A R YVNHV +TTQW+ P A PI RS A+ Q R + I +R P+ + P+ V + E LP+GW QV +GRV +IDH K TT+ P TG + P S D G PLP GW G++ +++HN RTT WE P L
Sbjct: 202 GPAQPVMMPSST-TAPPSLPTGWEERQDANGRTYYVNHVARTTQWDRPTGATPIEEQVQQRSLASAQEFRRRVHISVDRSDENERRDNSETLSQILESQRAETPNNRRHSEPIPANMVSQLTNLQISSEGLPAGWTMQVAPNGRVFFIDHNLKSTTWVDPRTGRPSPLPNQNN-------------VPNRPRFDSVDDLG--PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 420
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI000BA7E995 (E3 ubiquitin-protein ligase NEDD4-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7E995) HSP 1 Score: 86.7 bits (213), Expect = 3.380e-16 Identity = 67/235 (28.51%), Postives = 89/235 (37.87%), Query Frame = 2
Query: 23 GPWPEI*MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYA---------------------------TNQVARAQARIGFPAEQPRDRLMPSGASDASPLDHRGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
GP + M S+ P LPPGWE + A R YVNH+ +TTQW P PI T+ A Q AE P +R D + E LP+GW Q+ GR+ +IDH +K TT+ P TG + + P S D G PLP GW G++ +++HN RTT WE P +
Sbjct: 78 GPVQPVMMPSSA-TAPPSLPPGWEERQDANGRTYYVNHIARTTQWERPTGTTPIEEQVQQRSLDSAREFRRRVHISVDRTDEIEQRTSSEALTQILESQQAETPTNRRHSEPIPDNMVQQLAALRISSEGLPAGWTMQIAPSGRIFFIDHNSKATTWVDPRTGRPSSFPNQNN-------------VPNKPKFESVDDLG--PLPEGWEERVHTDGRIFFIDHNTRTTQWEDPRM 296
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A834F672_ORYME (HECT-type E3 ubiquitin transferase n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834F672_ORYME) HSP 1 Score: 85.9 bits (211), Expect = 1.170e-15 Identity = 65/216 (30.09%), Postives = 91/216 (42.13%), Query Frame = 2
Query: 65 TPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARA------------QARIGFPAEQ-------PRDRLMPSGASDASPLDH---RGVPEDKESLPSGWESQVVD-GRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
T LPPGWE R A R YVNH T+TT W+ P++ P + + + A A + P+E P + PS D PL H + S+P+GWE + + GR+ +IDH K TT+ P + RR S P+ L PLPPGW + G+V Y++HN + T W+ P L
Sbjct: 680 TSAGLPPGWEEKRDAKGRRYYVNHNTRTTSWSKPVIQRPSETAASASLAPTAPXXXXXXXXTSPSAALRVPSESGAPLSRSPTITIQPSAPED--PLPHGTSTNATFESGSMPAGWEVRHANNGRLFFIDHNTKTTTWEDPRLKVPVQVRRKSS---------------TDPSDLG-------PLPPGWEERVHSDGRVFYIDHNTKITQWDDPRL 871
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A224X9S9_9HEMI (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A224X9S9_9HEMI) HSP 1 Score: 84.0 bits (206), Expect = 4.500e-15 Identity = 63/203 (31.03%), Postives = 90/203 (44.33%), Query Frame = 2
Query: 71 TDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIMADPIPRSYATNQVARA-----QARIGFPAEQPRDRLMPSGASDASPLDHRGVPE------DKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
+ LPPGWE + A R YVNHV ++TQW+ P M + ++Q+ + Q R A++ S +S L +G E + LP GW Q+ +GRV +IDH +K TT+ P TG + G G+ GD G LP GW G++ +++HN RTT WE P L
Sbjct: 141 SSLPPGWEERQDANGRTYYVNHVARSTQWDRPTMNNE--NRNTSHQILESAATEFQRRFHISADE-----ADSSRRRSSVLSCQGTEETCQGISSADGLPEGWGLQIAPNGRVFFIDHNSKATTWVDPRTGRASAMPQPG----------GNTSHIRNSVTADGDLGS---LPEGWEERVHTDGRIFFIDHNTRTTQWEDPRL 323
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: UPI0008F9C561 (E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=4 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C561) HSP 1 Score: 84.0 bits (206), Expect = 5.010e-15 Identity = 67/224 (29.91%), Postives = 96/224 (42.86%), Query Frame = 2
Query: 44 MASNVPETPTDLPPGWEAIR-AGDRWVYVNHVTKTTQWNAPIM--ADPIPRSYATNQVARA-QARIGFPAEQPR--------DRLMPSGA--------SDASPLDHRGVPEDKES----LPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPEL 640
NV E P LPPGWE + A R YVNH+ ++TQW P + + +P + + A Q R A+ R D + S A S+++P+ H V ++ + LP+GW QV +GRV +IDH + TT+ P TG S P G PLP GW + ++ +++HN RTT WE P L
Sbjct: 245 FVGNV-EQPNALPPGWEERQDANGRTYYVNHIARSTQWERPTLQQSQEVPNNQSLETAATEFQRRFHISADNDRRENSLQSTDSVDSSTAVAAAATPTSNSTPVVHTPVSTNQNTSGAGLPAGWSLQVAPNGRVFFIDHNTRATTWVDPRTGRASPMPNQSHSTS--------EEHRQEPEDELG------PLPEGWEERVHSDNRIFFIDHNTRTTQWEDPRL 453
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Match: A0A087UMD0_STEMI (Uncharacterized protein (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UMD0_STEMI) HSP 1 Score: 82.8 bits (203), Expect = 8.290e-15 Identity = 70/224 (31.25%), Postives = 89/224 (39.73%), Query Frame = 2
Query: 59 PETPTDLPPGWEAIRAGD-RWVYVNHVTKTTQWNAPIMADPIP-----RSYATNQVARAQARIGFPA-----EQPRD------------RLMPSGASDASPLDH-----RGVPEDKESLPSGWESQVV-DGRVLYIDHVNKVTTYTKPTTGADDEYRRSGSGMSGASGGYGSXXXXXAPAALSGDGGGEPPLPPGWTAEKTAGGKVSYVNHNHRTTHWEMPELD 643
P + LPPGWE + + R YVNH +TTQW P A RS + Q R + I + PRD RL PS + P + E LP+GW QV +GRV YIDH +K TT+ P TG S P S D G PLP GW G++ +++HN R T WE P L+
Sbjct: 203 PSNHSPLPPGWEERQDNNGRTYYVNHAARTTQWERPTGAPQSEEEIQQRSLESAQEFRRRVHISIDHSDEVNDHPRDNIEILRNMLEAQRLDPSVRRHSMPTNSLTRQSSSNQSSSEGLPTGWSMQVAPNGRVFYIDHNSKTTTWVDPRTGKPSVLPNQSS-------------VPNRPRFSSVDDLG--PLPEGWEERFHTDGRIFFIDHNSRITQWEDPRLN 411 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8858.20353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8858.20353.1 >prot_Ecto-sp13_S_contig8858.20353.1 ID=prot_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp MASNVPETPTDLPPGWEAIRAGDRWVYVNHVTKTTQWNAPIMADPIPRSYback to top mRNA from alignment at Ecto-sp13_S_contig8858:594..4220- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8858.20353.1 ID=mRNA_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8858:594..4220- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8858:594..4220- >mRNA_Ecto-sp13_S_contig8858.20353.1 ID=mRNA_Ecto-sp13_S_contig8858.20353.1|Name=mRNA_Ecto-sp13_S_contig8858.20353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8858:594..4220- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |