mRNA_Ecto-sp13_S_contig88535.20347.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.410e-29 Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT D
Sbjct: 185 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGD 239
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.410e-29 Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV HIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT D
Sbjct: 199 QVCHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGD 254
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S3Y0U1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0U1_HETAK) HSP 1 Score: 97.1 bits (240), Expect = 1.430e-22 Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV+HI+ATA QNGSCIVWDL+QKKPWCEL+D R I DVAWNPDQG H+VT D
Sbjct: 176 QVAHILATAGQNGSCIVWDLRQKKPWCELKDTIRGRIADVAWNPDQGLHIVTASGD 231
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 5.040e-22 Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV+HI+AT+AQNG+CIVWDL+QKKPWCELRD RAPI D+ WNP QG H++T D
Sbjct: 189 QVAHILATSAQNGTCIVWDLRQKKPWCELRDAARAPIPDMCWNPTQGLHIITASGD 244
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A4D9D4C1_9STRA (WW domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4C1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19 Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV HI+A+ + NGS IVWDL+QKKP+CELRDP R P+ D+AWNPD+G H+VT D
Sbjct: 188 QVPHILASCSGNGSTIVWDLRQKKPYCELRDPARGPVADIAWNPDEGLHMVTASGD 243
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.650e-19 Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1
Query: 4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT 156
V+HI+A+A+QNGSC+VWDL+ KKPWCELRDP RA I D+AWNP +G H++T
Sbjct: 212 VAHILASASQNGSCMVWDLRSKKPWCELRDPARACIADIAWNPVEGLHMMT 262
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN) HSP 1 Score: 88.6 bits (218), Expect = 3.610e-19 Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPN-RAPITDVAWNPDQGQHLVTGGRD 168
QVSHI+ATA+QNGS IVWDL+QKKPWCELRD + R+P++ VAWNP +G HL T D
Sbjct: 192 QVSHILATASQNGSTIVWDLRQKKPWCELRDASFRSPVSAVAWNPAEGLHLATASGD 248
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A482RVV6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVV6_9ARCH) HSP 1 Score: 87.4 bits (215), Expect = 5.380e-19 Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV HI+A+AAQNGS +WDL+QK+ WCELRDP + D+AWNPDQG H+VT D
Sbjct: 110 QVVHILASAAQNGSTYIWDLRQKRAWCELRDPANGVVADIAWNPDQGLHIVTASGD 165
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 6.750e-19 Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDP-NRAPITDVAWNPDQGQHLVTGGRD 168
QVSHI+ATA+Q+G+ IVWDL+QKKPWCELRD +R+P++DVAWNP +G HL T D
Sbjct: 188 QVSHILATASQSGATIVWDLRQKKPWCELRDAASRSPVSDVAWNPLEGLHLATASGD 244
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S1B3D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3D6_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.000e-18 Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
QV+HI+A+A +GSCIVWDL+QKKPWCE+R+ R ++ WNP +G H+VT D
Sbjct: 38 QVAHIVASAGGDGSCIVWDLRQKKPWCEMREAGRCALSAACWNPTEGLHIVTASSD 93 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig88535.20347.1 >prot_Ecto-sp13_S_contig88535.20347.1 ID=prot_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRback to top mRNA from alignment at Ecto-sp13_S_contig88535:329..496- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig88535.20347.1 ID=mRNA_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88535:329..496- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88535:329..496- >mRNA_Ecto-sp13_S_contig88535.20347.1 ID=mRNA_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88535:329..496- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |