mRNA_Ecto-sp13_S_contig88535.20347.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88535.20347.1
Unique NamemRNA_Ecto-sp13_S_contig88535.20347.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.410e-29
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT   D
Sbjct:  185 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGD 239          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.410e-29
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV HIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT   D
Sbjct:  199 QVCHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGD 254          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S3Y0U1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0U1_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.430e-22
Identity = 41/56 (73.21%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV+HI+ATA QNGSCIVWDL+QKKPWCEL+D  R  I DVAWNPDQG H+VT   D
Sbjct:  176 QVAHILATAGQNGSCIVWDLRQKKPWCELKDTIRGRIADVAWNPDQGLHIVTASGD 231          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.040e-22
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV+HI+AT+AQNG+CIVWDL+QKKPWCELRD  RAPI D+ WNP QG H++T   D
Sbjct:  189 QVAHILATSAQNGTCIVWDLRQKKPWCELRDAARAPIPDMCWNPTQGLHIITASGD 244          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A4D9D4C1_9STRA (WW domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4C1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV HI+A+ + NGS IVWDL+QKKP+CELRDP R P+ D+AWNPD+G H+VT   D
Sbjct:  188 QVPHILASCSGNGSTIVWDLRQKKPYCELRDPARGPVADIAWNPDEGLHMVTASGD 243          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.650e-19
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVT 156
            V+HI+A+A+QNGSC+VWDL+ KKPWCELRDP RA I D+AWNP +G H++T
Sbjct:  212 VAHILASASQNGSCMVWDLRSKKPWCELRDPARACIADIAWNPVEGLHMMT 262          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.610e-19
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPN-RAPITDVAWNPDQGQHLVTGGRD 168
            QVSHI+ATA+QNGS IVWDL+QKKPWCELRD + R+P++ VAWNP +G HL T   D
Sbjct:  192 QVSHILATASQNGSTIVWDLRQKKPWCELRDASFRSPVSAVAWNPAEGLHLATASGD 248          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A482RVV6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVV6_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 5.380e-19
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV HI+A+AAQNGS  +WDL+QK+ WCELRDP    + D+AWNPDQG H+VT   D
Sbjct:  110 QVVHILASAAQNGSTYIWDLRQKRAWCELRDPANGVVADIAWNPDQGLHIVTASGD 165          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.750e-19
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDP-NRAPITDVAWNPDQGQHLVTGGRD 168
            QVSHI+ATA+Q+G+ IVWDL+QKKPWCELRD  +R+P++DVAWNP +G HL T   D
Sbjct:  188 QVSHILATASQSGATIVWDLRQKKPWCELRDAASRSPVSDVAWNPLEGLHLATASGD 244          
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Match: A0A7S1B3D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3D6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.000e-18
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGRD 168
            QV+HI+A+A  +GSCIVWDL+QKKPWCE+R+  R  ++   WNP +G H+VT   D
Sbjct:   38 QVAHIVASAGGDGSCIVWDLRQKKPWCEMREAGRCALSAACWNPTEGLHIVTASSD 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88535.20347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR5_ECTSI1.410e-2994.55Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A6H5KCD9_9PHAE1.410e-2992.86WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S3Y0U1_HETAK1.430e-2273.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XZL8_9STRA5.040e-2269.64Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9D4C1_9STRA1.420e-1964.29WW domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7S2GC77_9STRA2.650e-1968.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YCL1_AURAN3.610e-1968.42Sec16_C domain-containing protein (Fragment) n=1 T... [more]
A0A482RVV6_9ARCH5.380e-1962.50Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S4EAB3_9STRA6.750e-1966.67Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1B3D6_9STRA2.000e-1855.36Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88535contigEcto-sp13_S_contig88535:329..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score112.8
Seed ortholog evalue4.6e-23
Seed eggNOG ortholog2880.D8LBR5
Model size168
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
Exons1
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.5902138-CDS-Ecto-sp13_S_contig88535:328..4811681464157.5902138-CDS-Ecto-sp13_S_contig88535:328..481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88535 329..481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464157.609011-UTR-Ecto-sp13_S_contig88535:481..4961681464157.609011-UTR-Ecto-sp13_S_contig88535:481..496Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig88535 482..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88535.20347.1prot_Ecto-sp13_S_contig88535.20347.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88535 329..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88535.20347.1

>prot_Ecto-sp13_S_contig88535.20347.1 ID=prot_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTGGR
D
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mRNA from alignment at Ecto-sp13_S_contig88535:329..496-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88535.20347.1 ID=mRNA_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88535:329..496- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTCCCACATCATGGCGACCGCCGCCCAGAACGGGTCGTGCATCGT TTGGGACCTTAAGCAAAAGAAGCCGTGGTGCGAGCTGAGGGACCCCAACC GGGCTCCGATCACGGACGTTGCTTGGAACCCGGACCAAGGGCAGCATCTC GTCACCGGTGGGAGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88535:329..496-

>mRNA_Ecto-sp13_S_contig88535.20347.1 ID=mRNA_Ecto-sp13_S_contig88535.20347.1|Name=mRNA_Ecto-sp13_S_contig88535.20347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88535:329..496- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACCGCCGCCCAGAACGGGTCGTGCATCGTTTGGGACCTTAAGCA
AAAGAAGCCGTGGTGCGAGCTGAGGGACCCCAACCGGGCTCCGATCACGG
ACGTTGCTTGGAACCCGGACCAAGGGCAGCATCTCGTCACCGGTGGGAGA
GAC
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