mRNA_Ecto-sp13_S_contig8849.20340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8849.20340.1
Unique NamemRNA_Ecto-sp13_S_contig8849.20340.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8849.20340.1 vs. uniprot
Match: D7G535_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G535_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 5.470e-162
Identity = 248/269 (92.19%), Postives = 254/269 (94.42%), Query Frame = 1 
Query:    4 EICTDNETTPPPKLMSEKKQGREGVMEVLVVNLMACASAGMSLAARYSGHAGGIVFSALAVIFGAAMCYVVSGLQSHPTALVSDGNFLAPLFPWPQALALWVNWFLVCQLPAEGLLSLLAFVGFAAAQYACYGVSRSVGNCTGWDRLLRAASARESPATSRCLSLSADALENALMGAGGAPTADSMSAHEGHPLLGCGEGGEGGAEQRPGASIVGDVRDNSENVATPLTPVVTVLSNDRLKAPAATASHDSLLVRRRSLDSHGLRSAAP 810
            EICTDNETTPPPKL SE+KQGREGVMEVLVVNLMACASAGMSLAARYSGHAGGIVFSA AVIFGAAMCYVVSGLQSHP ALVSDGNFLAPLFPWPQALALWVNWFLVCQLP EGLLSLLA+VGFAAAQYACYGVSRSVGNCTGW RLL AASARESPATSRCLSLSADALENALM AGGAPTADSMSA+EGHPLLGCGEGG GGAEQRPG SI     D+SE+VATPL PVVTVLSNDRLKAPAATASHDSLLVRRRSLDSHGLR+AAP
Sbjct:  458 EICTDNETTPPPKLASERKQGREGVMEVLVVNLMACASAGMSLAARYSGHAGGIVFSAFAVIFGAAMCYVVSGLQSHPIALVSDGNFLAPLFPWPQALALWVNWFLVCQLPTEGLLSLLAYVGFAAAQYACYGVSRSVGNCTGWARLLGAASARESPATSRCLSLSADALENALMDAGGAPTADSMSANEGHPLLGCGEGGGGGAEQRPGISIGXXXXDSSEDVATPLIPVVTVLSNDRLKAPAATASHDSLLVRRRSLDSHGLRTAAP 726
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8849.20340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G535_ECTSI5.470e-16292.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8849contigEcto-sp13_S_contig8849:4998..6633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score482.3
Seed ortholog evalue1.5e-133
Seed eggNOG ortholog2880.D7G535
Model size813
KEGG koko:K03294,ko:K13864
KEGG TC2.A.3.2,2.A.3.3.2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0016020,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons2
EggNOG free text desc.amino acid transport
EggNOG OGsCOG0531@1,KOG1286@2759
Ec32 ortholog descriptionAmino acid/polyamine transporter I
Ec32 orthologEc-00_008350.1
Cds size813
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.8919716-CDS-Ecto-sp13_S_contig8849:4997..55821681464156.8919716-CDS-Ecto-sp13_S_contig8849:4997..5582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8849 4998..5582 -
1681464156.903717-CDS-Ecto-sp13_S_contig8849:6405..66331681464156.903717-CDS-Ecto-sp13_S_contig8849:6405..6633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8849 6406..6633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8849.20340.1prot_Ecto-sp13_S_contig8849.20340.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8849 4998..6633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8849.20340.1

>prot_Ecto-sp13_S_contig8849.20340.1 ID=prot_Ecto-sp13_S_contig8849.20340.1|Name=mRNA_Ecto-sp13_S_contig8849.20340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
TEICTDNETTPPPKLMSEKKQGREGVMEVLVVNLMACASAGMSLAARYSG
HAGGIVFSALAVIFGAAMCYVVSGLQSHPTALVSDGNFLAPLFPWPQALA
LWVNWFLVCQLPAEGLLSLLAFVGFAAAQYACYGVSRSVGNCTGWDRLLR
AASARESPATSRCLSLSADALENALMGAGGAPTADSMSAHEGHPLLGCGE
GGEGGAEQRPGASIVGDVRDNSENVATPLTPVVTVLSNDRLKAPAATASH
DSLLVRRRSLDSHGLRSAAP*
back to top

mRNA from alignment at Ecto-sp13_S_contig8849:4998..6633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8849.20340.1 ID=mRNA_Ecto-sp13_S_contig8849.20340.1|Name=mRNA_Ecto-sp13_S_contig8849.20340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8849:4998..6633- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGAGATTTGCACCGACAACGAAACCACGCCCCCTCCCAAGCTCATGAG
CGAAAAAAAGCAGGGGCGGGAGGGCGTGATGGAGGTGCTAGTCGTAAACC
TGATGGCCTGTGCGAGTGCTGGCATGTCCCTCGCGGCGAGGTACAGCGGA
CACGCTGGGGGCATCGTTTTTTCGGCGTTAGCTGTTATCTTCGGAGCTGC
GATGTGCTACGTGGTGTCCGGCCTGCAAGTGAGAGATCTGGAATCCGAAG
GCGTGGTTGGTAGTTTTATTGTTGCGGGGCGGAGTAATTATCCTCCTTTG
TGACCCCGGCTGGTGCTTCCAAACATACCGAAAGGCGTGAAAACTGTCGT
CCAGAGTAGGTGGGATTACCTCGCACACTCTCCATTTCTGTCCGGTCGAA
AACGCGGTAGCATGCTGTTTCCCAGCTTTCCTGGTGGGTAAAGACAAGTG
GCGAATTTGATCGGTTCAGGGTGGCCCGGAAGTGCTTGGTGTGTTTAGGG
TACGATGTTTGTTGCAGAAAAGGAATGGCAGAAATTCTGTTGACAAGAGC
GAGGCCTCTGCGTGTGGATCAGAGGGATGGGAGACGAGTTGATGTAATTG
CCCGAACACAAGGTGAAAGCTCTCGGCAAGTACATCTCGCTCCCCATGGG
TCAAGGGATGTTCACGAAAAATTACCGATGAGTTGTGCTTCCCCACGCTG
GGTGTCAACCAGTTGCCTCAGGTGCTGTCGTGCGAGATTTGTCGCTGTTT
GCGTTCGTTTGTGCGAACACAGCGCTATTCTTCCTTACCCAAATGGAAAC
TCGAGATATTTATACGATACGCGTTCAAGAATTCTTACCGGCGAGGCCAC
CCCCGTTGTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCGCNNNAAAGGAAACCTC
AGAAATTTATAAGAAACACATCCAAGAAATCTTACCGGCGAGCGCCCCCC
CCTTGTCCCCCCCCCCCCCCCCCCCCCCCCTACCCCGCCGCCGCGCGGCA
GTCTCACCCTACCGCGCTCGTCTCGGACGGAAACTTCCTAGCCCCGCTCT
TTCCGTGGCCTCAAGCGCTGGCTCTGTGGGTGAACTGGTTCTTGGTCTGC
CAGCTCCCGGCAGAAGGCCTGCTCTCCCTCCTCGCCTTCGTGGGCTTCGC
CGCGGCCCAGTACGCCTGCTACGGGGTGTCGCGCAGCGTCGGCAACTGCA
CCGGGTGGGACCGGCTTCTTCGCGCCGCGTCGGCGAGAGAGTCCCCCGCT
ACGTCACGTTGCCTGTCGCTGTCCGCGGACGCATTGGAGAACGCCTTGAT
GGGGGCGGGAGGCGCGCCGACGGCGGATAGCATGTCGGCGCACGAGGGGC
ATCCGCTACTAGGATGTGGAGAGGGGGGGGAAGGGGGAGCGGAGCAGCGG
CCGGGCGCTTCGATTGTTGGTGATGTTAGGGATAATTCTGAAAATGTAGC
GACGCCCCTGACACCCGTGGTGACGGTGCTGTCCAACGACCGGCTGAAGG
CACCGGCCGCAACGGCCTCGCACGATAGCCTGCTGGTGCGCCGACGTTCC
CTCGATAGCCACGGGCTCCGTTCGGCGGCGCCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8849:4998..6633-

>mRNA_Ecto-sp13_S_contig8849.20340.1 ID=mRNA_Ecto-sp13_S_contig8849.20340.1|Name=mRNA_Ecto-sp13_S_contig8849.20340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8849:4998..6633- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGAGATTTGCACCGACAACGAAACCACGCCCCCTCCCAAGCTCATGAG
CGAAAAAAAGCAGGGGCGGGAGGGCGTGATGGAGGTGCTAGTCGTAAACC
TGATGGCCTGTGCGAGTGCTGGCATGTCCCTCGCGGCGAGGTACAGCGGA
CACGCTGGGGGCATCGTTTTTTCGGCGTTAGCTGTTATCTTCGGAGCTGC
GATGTGCTACGTGGTGTCCGGCCTGCAATCTCACCCTACCGCGCTCGTCT
CGGACGGAAACTTCCTAGCCCCGCTCTTTCCGTGGCCTCAAGCGCTGGCT
CTGTGGGTGAACTGGTTCTTGGTCTGCCAGCTCCCGGCAGAAGGCCTGCT
CTCCCTCCTCGCCTTCGTGGGCTTCGCCGCGGCCCAGTACGCCTGCTACG
GGGTGTCGCGCAGCGTCGGCAACTGCACCGGGTGGGACCGGCTTCTTCGC
GCCGCGTCGGCGAGAGAGTCCCCCGCTACGTCACGTTGCCTGTCGCTGTC
CGCGGACGCATTGGAGAACGCCTTGATGGGGGCGGGAGGCGCGCCGACGG
CGGATAGCATGTCGGCGCACGAGGGGCATCCGCTACTAGGATGTGGAGAG
GGGGGGGAAGGGGGAGCGGAGCAGCGGCCGGGCGCTTCGATTGTTGGTGA
TGTTAGGGATAATTCTGAAAATGTAGCGACGCCCCTGACACCCGTGGTGA
CGGTGCTGTCCAACGACCGGCTGAAGGCACCGGCCGCAACGGCCTCGCAC
GATAGCCTGCTGGTGCGCCGACGTTCCCTCGATAGCCACGGGCTCCGTTC
GGCGGCGCCTTGA
back to top