mRNA_Ecto-sp13_S_contig8847.20337.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8847.20337.1
Unique NamemRNA_Ecto-sp13_S_contig8847.20337.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A6H5JGY0_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGY0_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 5.620e-83
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVNMGMDGMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQKPVSDYF 405
            QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVNMGM+GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILT+NKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQKPVSDYF
Sbjct:  605 QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVNMGMEGMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTENKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQKPVSDYF 739          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S2CZK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CZK9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.400e-31
Identity = 71/136 (52.21%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    7 TTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYD-GPAEQTKLPFQ 384
            TTGASND QQVA++A RMV +WGMS  IGP  +         MG   G    QWG  +N   +MEV+RLV  AY R K ILT+N+ L+D+LA +LL+++TV++EE  LMIAENG   APY  Y  GPA   +LPFQ
Sbjct:  188 TTGASNDLQQVASVAGRMVKEWGMSPRIGPIALRDPSGQQPFMGRSQGQPQTQWGGQINALADMEVDRLVANAYARCKKILTENRVLLDQLAAELLEKETVSAEEFQLMIAENGKYMAPYELYPAGPASAIELPFQ 323          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S0FV69_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FV69_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.210e-30
Identity = 67/136 (49.26%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 VTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQ 384
            VTTGASNDFQQVANIA RMV +WGMS E+G   +         MG   G +  +WG  +   V+MEVERLVN +Y +AK I+ DN++L+D LA+ L+DQ+ V+SEE  +MI E G ETA ++      ++  LPFQ
Sbjct:   94 VTTGASNDFQQVANIAKRMVKEWGMSPEVGLIALETPQSGGPFMGRSMGQQQTRWGSKIMGTVDMEVERLVNNSYLKAKQIIEDNRDLLDLLAKTLVDQEVVSSEEFQMMIVECGSETADFQIIGEEKKRADLPFQ 229          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A835YMI8_9STRA (FtsH protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.850e-29
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    4 VTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQ 384
            VTTGASND QQVANIA RMVTQWGMSE +G  VV         MG   G  G+ WGP +  +V+ EV RLV+ AY  AK IL  N+ L++ L ++LL+Q+ VT+EEL+++I++  +  APY  Y   A++  LPFQ
Sbjct:  597 VTTGASNDLQQVANIARRMVTQWGMSEVVGQIVVGGXXXGNPFMGRQMGEGGDSWGPKVIEQVDQEVGRLVSNAYLTAKNILKQNRNLLEALKEQLLEQEQVTAEELAVLISKFNVAMAPYGVYGEAADEALLPFQ 732          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S1YGK9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YGK9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.010e-27
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    1 QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMDGMEGE--QWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPF 381
            +VTTGASND QQ AN+A RMV +WGMSE++G   +         MGMD M G+   W          EVERLV+ AY +AK ILTDN EL++ L ++L+DQ+TV++EE  +M+ E   ++ P++ Y    ++  +P+
Sbjct:   88 KVTTGASNDIQQCANVAKRMVFEWGMSEKVGKLAITEEDGRKPFMGMDYMRGQGPTWSDEFLAEAYNEVERLVDNAYLQAKKILTDNAELLEALKERLMDQETVSAEEFQMMLVEFKTQSVPFQLYGSAIDRDLMPY 224          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S2E7S1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7S1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.390e-27
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    4 VTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQ 384
            VTTGASND QQVANIA RMV +WGMS+++GP  +         MG + GM   QWG  M   V+ EVERLVN +Y  AK IL +N+ L+D LA+ L++Q+ V++EE  +MI E G +T  Y        + KLPFQ
Sbjct:  230 VTTGASNDIQQVANIAKRMVKEWGMSKDVGPVALQSPSGGGPFMGREMGMRRTQWGTKMLGVVDKEVERLVNNSYLTAKKILDENRLLLDHLAKVLVEQEVVSAEEFQMMIVEYGAKTFQYDVIGQERNRDKLPFQ 365          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A835YNY9_9STRA (Metalloprotease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNY9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.740e-26
Identity = 69/140 (49.29%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    4 VTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVNMGMDG--MEGEQ-------WGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENG--IETAPYREYD-GPAEQTKLPFQK 387
            VTTGASND QQVA+IA RMV QWGMS+++G  VV  G  G    G Q       WGP +  +V+ EVER+VN AY R K IL+ N +L++KLA +LL+ ++VT+EEL +MI E G  +  APY  YD     +  LPF++
Sbjct:  470 VTTGASNDLQQVASIARRMVGQWGMSDKVGQIVVGGGGGGNPFMGRQMGEAQDTWGPKVTEQVDQEVERIVNNAYVRCKEILSHNVDLLEKLAARLLEVESVTAEELGIMIMEQGDKLWMAPYGMYDLEENHRDALPFKE 609          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S1BVA0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVA0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.180e-26
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQ 384
            +VTTGASND +QVA+IA RMVTQWGMSE++GP V+         MG   G     WG  ++   + E+ERLVN +Y  AK +L DNK+L   L+Q L++++ V++EE  +M  E G++T  +        + KLPFQ
Sbjct:  169 EVTTGASNDIEQVADIAKRMVTQWGMSEKVGPVVIEEQQSGGPFMGRSMGQAQTTWGGNISSAADAEIERLVNNSYLMAKKVLLDNKDLFMHLSQTLVEREQVSAEEFQMMQVEFGMQTVDFITIGDELNRDKLPFQ 305          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S3QCA1_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCA1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.810e-26
Identity = 61/135 (45.19%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    7 TTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN--------MGMD-GMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQ 384
            TTGASNDFQQVANIA RM+ +WGMS+E+G   +         MG D GM+  +WG  +  + N+EVERLVN +Y +AK I+T+N+ L+D LA  L++Q+ V++EE  +MI E   + A +        +  LPFQ
Sbjct:  538 TTGASNDFQQVANIAKRMIKEWGMSDEVGRVALEAPQQGGPFMGRDMGMQRTKWGGKILGKTNVEVERLVNNSYLKAKKIITENRALLDHLALTLVEQEVVSAEEFQMMIVEFNAKVADFEIIGDEQNRESLPFQ 672          
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Match: A0A7S1H110_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H110_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.110e-26
Identity = 59/135 (43.70%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    4 VTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVN-------MGMDGMEGEQWGPTMNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELSLMIAENGIETAPYREYDGPAEQTKLPFQK 387
            VTTGASND QQVANIA RMV +WGMS+++G  VV        M M    G  WG  +   +  EVERLVN +Y  AK +LT NK+L+++L + L D + V++EE  +++ + G +T  Y        + KLPFQ+
Sbjct:  227 VTTGASNDIQQVANIAKRMVKEWGMSDKVGRVVVQDQQGGGYMAMMQGRGSNWGEDIQDSIGSEVERLVNNSYLLAKKVLTQNKDLLEELKEMLCDTEVVSAEEFQMLLVKYGAKTVGYEVIGEERNRDKLPFQE 361          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8847.20337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY0_9PHAE5.620e-8398.52AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2CZK9_9STRA2.400e-3152.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0FV69_9STRA1.210e-3049.26Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A835YMI8_9STRA2.850e-2950.00FtsH protease n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1YGK9_9STRA1.010e-2743.07Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2E7S1_9STRA1.390e-2748.53Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835YNY9_9STRA1.740e-2649.29Metalloprotease n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1BVA0_9STRA4.180e-2643.80Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3QCA1_9STRA4.810e-2645.19Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1H110_9STRA5.110e-2643.70Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8847contigEcto-sp13_S_contig8847:5693..6100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score272.7
Seed ortholog evalue9.2e-71
Seed eggNOG ortholog2880.D8LBE1
Preferred nameFTSH1
Model size408
KEGG koko:K03798
KEGG ModuleM00742
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Exons1
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0465@1,KOG0731@2759
Ec32 ortholog descriptionFtsH protease
Ec32 orthologEc-27_004290.1
Cds size408
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.7966704-CDS-Ecto-sp13_S_contig8847:5692..61001681464156.7966704-CDS-Ecto-sp13_S_contig8847:5692..6100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8847 5693..6100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8847.20337.1prot_Ecto-sp13_S_contig8847.20337.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8847 5693..6100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8847.20337.1

>prot_Ecto-sp13_S_contig8847.20337.1 ID=prot_Ecto-sp13_S_contig8847.20337.1|Name=mRNA_Ecto-sp13_S_contig8847.20337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
QVTTGASNDFQQVANIAFRMVTQWGMSEEIGPFVVNMGMDGMEGEQWGPT
MNVRVNMEVERLVNQAYFRAKTILTDNKELMDKLAQKLLDQDTVTSEELS
LMIAENGIETAPYREYDGPAEQTKLPFQKPVSDYF*
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mRNA from alignment at Ecto-sp13_S_contig8847:5693..6100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8847.20337.1 ID=mRNA_Ecto-sp13_S_contig8847.20337.1|Name=mRNA_Ecto-sp13_S_contig8847.20337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8847:5693..6100- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACGACTGGTGCGTCCAACGACTTCCAACAGGTGGCCAACATCGC TTTCCGGATGGTGACACAGTGGGGCATGAGCGAGGAGATCGGTCCCTTCG TGGTCAACATGGGGATGGACGGAATGGAGGGGGAGCAGTGGGGACCGACG ATGAACGTGCGCGTCAACATGGAGGTCGAGCGATTGGTCAACCAGGCGTA CTTCCGCGCCAAGACCATCCTGACGGACAACAAGGAGTTGATGGACAAGC TCGCCCAGAAGTTGCTCGACCAGGACACCGTTACTTCTGAAGAGCTGTCG TTGATGATCGCCGAGAACGGGATCGAGACGGCGCCTTACCGGGAGTACGA CGGCCCTGCAGAGCAGACGAAGTTGCCTTTCCAGAAGCCTGTGTCCGACT ACTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8847:5693..6100-

>mRNA_Ecto-sp13_S_contig8847.20337.1 ID=mRNA_Ecto-sp13_S_contig8847.20337.1|Name=mRNA_Ecto-sp13_S_contig8847.20337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8847:5693..6100- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACGACTGGTGCGTCCAACGACTTCCAACAGGTGGCCAACATCGC
TTTCCGGATGGTGACACAGTGGGGCATGAGCGAGGAGATCGGTCCCTTCG
TGGTCAACATGGGGATGGACGGAATGGAGGGGGAGCAGTGGGGACCGACG
ATGAACGTGCGCGTCAACATGGAGGTCGAGCGATTGGTCAACCAGGCGTA
CTTCCGCGCCAAGACCATCCTGACGGACAACAAGGAGTTGATGGACAAGC
TCGCCCAGAAGTTGCTCGACCAGGACACCGTTACTTCTGAAGAGCTGTCG
TTGATGATCGCCGAGAACGGGATCGAGACGGCGCCTTACCGGGAGTACGA
CGGCCCTGCAGAGCAGACGAAGTTGCCTTTCCAGAAGCCTGTGTCCGACT
ACTTCTAA
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