mRNA_Ecto-sp13_S_contig8845.20333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8845.20333.1
Unique NamemRNA_Ecto-sp13_S_contig8845.20333.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8845.20333.1 vs. uniprot
Match: A0A6H5JWC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC9_9PHAE)

HSP 1 Score: 977 bits (2526), Expect = 0.000e+0
Identity = 587/657 (89.35%), Postives = 600/657 (91.32%), Query Frame = 1 
Query:    1 STVSPAGLLSDILSSDMDAQDVRRLPSSRDLRLLKKPPIAHVLTNTTATATTAEIDSMFSGNLSSGGTNSNPSSNSTSQAKQEYGLETVPTKLGGAALSASAVGPRSPDSSNGQFTAPPSTNRSTARAPSTPPSPAALGTVSLTTRPYSPRRSMSIRTPRALAPLLTDVRRVSWRLKSSRRSSVGGGGRKDRAKDGLSSGFFSSSPSPSATPRNASSQKRATGSLNPWGGGTPGGKPSRMMSRTRSMINNTFGRMSLRVPVISPRSVVPETQXXXXXXX--DATCMPPSPAAAXXXXXXASPLGEVSLEIPCREQCLSGAVGGGEAAGRCALHVGGGDKEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGDRWVEARGRRTEASEEGKQHHLAGVRAAGGVGKEGELPTATVSARQDTFSEQSGGEVPLMDREEEEEEIVALSSYLACARGRGWPWSGKNILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGASGARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWARTAGTKGTASRSFRVEPRSSAHLSAEFGGERRGRKVASLTDERQACPLW 1965
            STVSPAGLLSDILSSD DAQDVRRLPSS D+RLLK PPIAHV+T      TTA+IDSMF GNLSSGGTNSN SSNS SQAKQEYGL TVP  LGGAALSASAVGPRSP SSNGQ+TAPPSTNRSTARAPSTPPSPAALGT+S TTRPYSPRRS+SIRTPRALAPLLTDVRRVSWRLKSSRRSSVGGGGRK+RAKDGLSSGFFS  PSPSATPRNASSQK+ATGSLNPWGGGTPGGKPSR MSRTRSMINNTFGRMSLRVPVISPRSVVPET+XXXXXXX  DATCMPPSPAAAXXXXXX SPLGEVS E PCRE+ L GAVGG                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGD WVEAR RRTEASE+GKQHHLAGVRAAGG GK  ELP  TVSARQDTFSEQS GEVP +DREEEEEEIVALSSYLACARGRGWPWSGK+ILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGASGARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVD VSAWAR AGTKGTASRSFRVEPRSSAHLSAEFGGERRGRKVASLTDERQACPLW
Sbjct:  135 STVSPAGLLSDILSSDTDAQDVRRLPSSGDVRLLK-PPIAHVIT------TTAKIDSMFRGNLSSGGTNSNNSSNSHSQAKQEYGLGTVPRTLGGAALSASAVGPRSPGSSNGQYTAPPSTNRSTARAPSTPPSPAALGTISPTTRPYSPRRSISIRTPRALAPLLTDVRRVSWRLKSSRRSSVGGGGRKNRAKDGLSSGFFS--PSPSATPRNASSQKQATGSLNPWGGGTPGGKPSRTMSRTRSMINNTFGRMSLRVPVISPRSVVPETEXXXXXXXGADATCMPPSPAAAXXXXXXXSPLGEVSSETPCRERRLLGAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGDWWVEARDRRTEASEKGKQHHLAGVRAAGGAGKGAELPMVTVSARQDTFSEQSRGEVPRLDREEEEEEIVALSSYLACARGRGWPWSGKDILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGASGARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDHVSAWARAAGTKGTASRSFRVEPRSSAHLSAEFGGERRGRKVASLTDERQACPLW 782
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BLAST of mRNA_Ecto-sp13_S_contig8845.20333.1 vs. uniprot
Match: D7FZ63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ63_ECTSI)

HSP 1 Score: 597 bits (1539), Expect = 6.150e-207
Identity = 363/415 (87.47%), Postives = 370/415 (89.16%), Query Frame = 1 
Query:  718 MMSRTRSMINNTFGRMSLRVPVISPRSVVPETQXXXXXXXDATCMPPSPAAAXXXXXXASPLGEVSLEIPCREQCLSGAVGGGEAAGRCALHVGGGDKEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGDRWVEARGRRTEASEEGKQHHLAGVRAAGGVGKEGELPTATVSARQDTFSEQSGGEVPLMDREEEEEEIVALSSYLACARGRGWPWSGKNILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGASGARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWARTAGTKGTASRSFRVEPRSSAHLSAEFGGERRGRKVASLTDERQACPL 1962
            MM RTRSMINNTFGRMSLRVPVISPRSVVPET+       DATCMPPSPAAAXXXXXX SP GEVS EIPCREQ L G VGGGE                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGD WV+AR RRTEASE+G +H LAGVRAAGG G   EL TATVSARQDTFSEQSGGEVP +DREEEEEEIVALSSYLACARGRGWPWSGK+ILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRH+TKGLTTSARGSWYVGLNACDLSHLSVPLAPTEP GA GARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWAR AGTKGTASRSFRVEPRSSAHLSA FGGERRGRKVASLTDERQACPL
Sbjct:    1 MMRRTRSMINNTFGRMSLRVPVISPRSVVPETETET----DATCMPPSPAAAXXXXXXXSPPGEVSPEIPCREQRLLGTVGGGEXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQGDCDGDGDGWVDARDRRTEASEKGNKHDLAGVRAAGGAGTGAELLTATVSARQDTFSEQSGGEVPRLDREEEEEEIVALSSYLACARGRGWPWSGKDILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPTEAVTRHRTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPWGACGARSDLEAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWARAAGTKGTASRSFRVEPRSSAHLSAGFGGERRGRKVASLTDERQACPL 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8845.20333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWC9_9PHAE0.000e+089.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ63_ECTSI6.150e-20787.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8845contigEcto-sp13_S_contig8845:1806..4402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2159
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_006410.1
Cds size1920
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.517017-UTR-Ecto-sp13_S_contig8845:1805..18531681464156.517017-UTR-Ecto-sp13_S_contig8845:1805..1853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8845 1806..1853 +
1681464156.5497766-UTR-Ecto-sp13_S_contig8845:4211..44021681464156.5497766-UTR-Ecto-sp13_S_contig8845:4211..4402Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8845 4212..4402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.5286107-CDS-Ecto-sp13_S_contig8845:1853..32771681464156.5286107-CDS-Ecto-sp13_S_contig8845:1853..3277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8845 1854..3277 +
1681464156.5388076-CDS-Ecto-sp13_S_contig8845:3715..42111681464156.5388076-CDS-Ecto-sp13_S_contig8845:3715..4211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8845 3716..4211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8845.20333.1prot_Ecto-sp13_S_contig8845.20333.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8845 1854..4211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8845.20333.1

>prot_Ecto-sp13_S_contig8845.20333.1 ID=prot_Ecto-sp13_S_contig8845.20333.1|Name=mRNA_Ecto-sp13_S_contig8845.20333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=640bp
MDAQDVRRLPSSRDLRLLKKPPIAHVLTNTTATATTAEIDSMFSGNLSSG
GTNSNPSSNSTSQAKQEYGLETVPTKLGGAALSASAVGPRSPDSSNGQFT
APPSTNRSTARAPSTPPSPAALGTVSLTTRPYSPRRSMSIRTPRALAPLL
TDVRRVSWRLKSSRRSSVGGGGRKDRAKDGLSSGFFSSSPSPSATPRNAS
SQKRATGSLNPWGGGTPGGKPSRMMSRTRSMINNTFGRMSLRVPVISPRS
VVPETQTETETETDATCMPPSPAAAPPSPATASPLGEVSLEIPCREQCLS
GAVGGGEAAGRCALHVGGGDKEYDDGEDNNESSALLRKPPMGSSMTSSSA
FFPPDTASDDDQAQGDCDGDGDRWVEARGRRTEASEEGKQHHLAGVRAAG
GVGKEGELPTATVSARQDTFSEQSGGEVPLMDREEEEEEIVALSSYLACA
RGRGWPWSGKNILWAEYVSLNGHHRWVRAEHCRHALLLVRGWLYLLELPT
EAVTRHQTKGLTTSARGSWYVGLNACDLSHLSVPLAPTEPRGASGARSDL
EAPSCGLILHKRGVLGALAWVECRSAASRDALVDQVSAWARTAGTKGTAS
RSFRVEPRSSAHLSAEFGGERRGRKVASLTDERQACPLW*
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mRNA from alignment at Ecto-sp13_S_contig8845:1806..4402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8845.20333.1 ID=mRNA_Ecto-sp13_S_contig8845.20333.1|Name=mRNA_Ecto-sp13_S_contig8845.20333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8845:1806..4402+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAACCGTGAGCCCAGCTGGACTCCTTTCAGACATCCTTTCATCAGACAT
GGACGCCCAAGACGTGCGACGGCTACCTTCTTCCCGAGATTTACGACTGC
TCAAAAAACCGCCCATAGCCCACGTCCTTACCAACACCACCGCCACCGCC
ACCACGGCCGAGATCGACAGCATGTTCAGCGGCAACCTCAGCAGCGGCGG
CACCAACAGCAACCCCAGCAGCAACAGCACTTCTCAGGCCAAGCAGGAGT
ACGGCCTCGAGACCGTGCCGACAAAGCTTGGGGGGGCAGCACTGTCAGCA
TCGGCCGTGGGCCCGCGCTCGCCAGACAGCAGCAACGGCCAGTTCACCGC
ACCGCCCTCGACCAACCGATCGACAGCGCGAGCGCCTTCTACCCCCCCGT
CGCCGGCAGCTCTGGGCACCGTCTCCCTTACCACCCGGCCGTACTCCCCA
CGTCGCTCCATGTCTATCAGGACACCTCGGGCGTTGGCACCCCTCCTGAC
TGACGTTCGACGCGTGTCGTGGCGTCTGAAGAGCTCTCGGAGGTCTAGCG
TCGGCGGCGGTGGGAGAAAGGACAGGGCCAAAGACGGCCTTTCGTCCGGG
TTCTTTTCTTCTTCTCCCTCTCCCTCGGCCACTCCGAGGAACGCTTCCTC
CCAGAAGCGGGCGACGGGGTCGCTCAACCCCTGGGGCGGAGGCACGCCGG
GGGGGAAGCCGAGCAGGATGATGAGCAGGACTCGCTCCATGATCAACAAC
ACTTTCGGCCGTATGTCGCTTAGGGTACCGGTCATCTCTCCACGGTCGGT
TGTGCCGGAGACGCAGACCGAGACGGAGACCGAGACGGATGCCACCTGCA
TGCCTCCTTCCCCCGCAGCTGCCCCGCCCTCGCCAGCGACGGCTTCCCCT
CTAGGAGAGGTTTCTCTGGAGATTCCGTGCCGAGAACAGTGTCTGTCGGG
GGCTGTGGGGGGCGGGGAGGCGGCAGGGCGCTGTGCTTTGCACGTGGGCG
GTGGCGACAAGGAATACGATGACGGTGAGGACAACAACGAGAGCTCAGCA
TTGCTGAGGAAGCCGCCGATGGGGTCAAGCATGACGTCGTCCTCGGCGTT
TTTCCCGCCTGACACTGCGAGCGATGACGACCAAGCGCAAGGCGATTGCG
ATGGAGATGGCGATAGGTGGGTAGAAGCAAGGGGCAGGAGGACGGAGGCG
TCGGAGGAGGGAAAGCAGCATCACCTAGCGGGTGTCCGCGCCGCGGGCGG
GGTGGGAAAGGAAGGAGAGCTCCCTACGGCAACGGTTAGCGCTCGACAGG
ACACGTTTAGCGAGCAGTCCGGTGGGGAGGTGCCCCTCATGGACCGAGAA
GAGGAGGAGGAGGAGATTGTGGCCCTCTCTAGCTACCTGGCCTGTGCAAG
GGGTCGAGGGTGGCCATGGTCCGGCAAGAACATCCTCTGGGCCGAGTACG
TGTCGCTCAACGGTCACCACAGGTAGATTGTATCCGTTGTGCGATAACTA
GGCATGTGTACATGGCTGTTTCCTCAGAATCAACGAAGATCATTTGGATG
ACGATGAAGTGGTCAAGTACCGCAGGTTTCGTAAGATATCACCCCCCATG
GACCGATTTTCGAAGCTCGATTACTTGGCAGGAAAAATATTGACCGTGCC
GAAAATGGCGGCGTTGGAACCGTCTGACCCAAGCGTTCCGAAACGTATCC
TTTGATTGGGCATCCTCTTGTCGTGGAGTAATCGATATTTGTAAATCGAT
CCAGAGGTTGTGATGTATTACGCCATGTTACCTACAGTACACACTTACTC
CTCTTTGGTACGTACGAAGTCCTTGATTTTTTCTGACGCTTTGCCTTCAA
TTCCAATCTCGACTCTGCCACAAACCGACGCACCGAACGCTCCTTGTGCC
CTTTCTTCAGGTGGGTCCGAGCGGAGCACTGTCGCCATGCGCTCCTCCTC
GTTCGCGGTTGGCTGTACCTCCTAGAGCTGCCCACAGAAGCCGTCACTCG
GCACCAGACGAAAGGCCTCACTACCAGCGCCAGGGGAAGCTGGTACGTTG
GGCTGAACGCGTGTGACCTCAGCCACCTCTCCGTGCCCCTCGCACCCACG
GAGCCGCGGGGAGCAAGCGGGGCAAGAAGCGACTTGGAGGCCCCCAGCTG
CGGCCTGATCCTTCACAAGCGGGGTGTGCTTGGCGCGCTGGCTTGGGTGG
AGTGCCGCAGCGCGGCCAGCCGTGACGCCCTTGTTGACCAGGTTAGCGCT
TGGGCAAGGACTGCCGGCACGAAAGGCACCGCTAGCAGGTCTTTCCGGGT
GGAGCCGCGTTCGTCGGCGCACCTGTCGGCTGAGTTTGGTGGAGAGCGCA
GGGGGAGGAAGGTGGCTAGCTTGACTGACGAGAGGCAGGCGTGCCCGTTG
TGGTGAGGGTTCGTGGTTCATGTATAGAAGATAAGGTGTGGTGTGTGTGT
TGAAGTCACACGAGTTTCGCCACGGAAGGAGAACGATGGATTGCTGCATG
AGGGTTTTCTGGTGGGCAGGACGGGCGACACGCCATAGAAGGGGGGGGGG
GCGCTGAGGAATTGGATGAAAAACGTTTGCTAGTCTAGCACAAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8845:1806..4402+

>mRNA_Ecto-sp13_S_contig8845.20333.1 ID=mRNA_Ecto-sp13_S_contig8845.20333.1|Name=mRNA_Ecto-sp13_S_contig8845.20333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1920bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8845:1806..4402+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCCAAGACGTGCGACGGCTACCTTCTTCCCGAGATTTACGACT
GCTCAAAAAACCGCCCATAGCCCACGTCCTTACCAACACCACCGCCACCG
CCACCACGGCCGAGATCGACAGCATGTTCAGCGGCAACCTCAGCAGCGGC
GGCACCAACAGCAACCCCAGCAGCAACAGCACTTCTCAGGCCAAGCAGGA
GTACGGCCTCGAGACCGTGCCGACAAAGCTTGGGGGGGCAGCACTGTCAG
CATCGGCCGTGGGCCCGCGCTCGCCAGACAGCAGCAACGGCCAGTTCACC
GCACCGCCCTCGACCAACCGATCGACAGCGCGAGCGCCTTCTACCCCCCC
GTCGCCGGCAGCTCTGGGCACCGTCTCCCTTACCACCCGGCCGTACTCCC
CACGTCGCTCCATGTCTATCAGGACACCTCGGGCGTTGGCACCCCTCCTG
ACTGACGTTCGACGCGTGTCGTGGCGTCTGAAGAGCTCTCGGAGGTCTAG
CGTCGGCGGCGGTGGGAGAAAGGACAGGGCCAAAGACGGCCTTTCGTCCG
GGTTCTTTTCTTCTTCTCCCTCTCCCTCGGCCACTCCGAGGAACGCTTCC
TCCCAGAAGCGGGCGACGGGGTCGCTCAACCCCTGGGGCGGAGGCACGCC
GGGGGGGAAGCCGAGCAGGATGATGAGCAGGACTCGCTCCATGATCAACA
ACACTTTCGGCCGTATGTCGCTTAGGGTACCGGTCATCTCTCCACGGTCG
GTTGTGCCGGAGACGCAGACCGAGACGGAGACCGAGACGGATGCCACCTG
CATGCCTCCTTCCCCCGCAGCTGCCCCGCCCTCGCCAGCGACGGCTTCCC
CTCTAGGAGAGGTTTCTCTGGAGATTCCGTGCCGAGAACAGTGTCTGTCG
GGGGCTGTGGGGGGCGGGGAGGCGGCAGGGCGCTGTGCTTTGCACGTGGG
CGGTGGCGACAAGGAATACGATGACGGTGAGGACAACAACGAGAGCTCAG
CATTGCTGAGGAAGCCGCCGATGGGGTCAAGCATGACGTCGTCCTCGGCG
TTTTTCCCGCCTGACACTGCGAGCGATGACGACCAAGCGCAAGGCGATTG
CGATGGAGATGGCGATAGGTGGGTAGAAGCAAGGGGCAGGAGGACGGAGG
CGTCGGAGGAGGGAAAGCAGCATCACCTAGCGGGTGTCCGCGCCGCGGGC
GGGGTGGGAAAGGAAGGAGAGCTCCCTACGGCAACGGTTAGCGCTCGACA
GGACACGTTTAGCGAGCAGTCCGGTGGGGAGGTGCCCCTCATGGACCGAG
AAGAGGAGGAGGAGGAGATTGTGGCCCTCTCTAGCTACCTGGCCTGTGCA
AGGGGTCGAGGGTGGCCATGGTCCGGCAAGAACATCCTCTGGGCCGAGTA
CGTGTCGCTCAACGGTCACCACAGGTGGGTCCGAGCGGAGCACTGTCGCC
ATGCGCTCCTCCTCGTTCGCGGTTGGCTGTACCTCCTAGAGCTGCCCACA
GAAGCCGTCACTCGGCACCAGACGAAAGGCCTCACTACCAGCGCCAGGGG
AAGCTGGTACGTTGGGCTGAACGCGTGTGACCTCAGCCACCTCTCCGTGC
CCCTCGCACCCACGGAGCCGCGGGGAGCAAGCGGGGCAAGAAGCGACTTG
GAGGCCCCCAGCTGCGGCCTGATCCTTCACAAGCGGGGTGTGCTTGGCGC
GCTGGCTTGGGTGGAGTGCCGCAGCGCGGCCAGCCGTGACGCCCTTGTTG
ACCAGGTTAGCGCTTGGGCAAGGACTGCCGGCACGAAAGGCACCGCTAGC
AGGTCTTTCCGGGTGGAGCCGCGTTCGTCGGCGCACCTGTCGGCTGAGTT
TGGTGGAGAGCGCAGGGGGAGGAAGGTGGCTAGCTTGACTGACGAGAGGC
AGGCGTGCCCGTTGTGGTGA
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