mRNA_Ecto-sp13_S_contig8843.20332.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8843.20332.1
Unique NamemRNA_Ecto-sp13_S_contig8843.20332.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8843.20332.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 1.390e-125
Identity = 328/341 (96.19%), Postives = 329/341 (96.48%), Query Frame = 1
Query: 2143 TGEAGEEEAALALGGGQGGAEVVVPGGDTDGTVVRTYTEVDFTNGELPSGATMFEAVQMLMLKHARETAGGEVPITSSGDRFPHRSMPMPREQWGKTITLEFSPRSCSSHSAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RRDRQGKDKKEKPLEVLELPGVLAPGATPLDARLAVVHGLMEKGGGGGIGAGFRFGEHLCLLSALQAVCEEWSGLRRSLVSHGSVAGDGDLPDPHPSVLHDLARRCIVSGLQRKQACNPLALCTGSLPSWCVGLP 3162
            TGE GEEEAALALGGGQGGAEVVV GGD  GTVVR YTEVDFTNGELPSGATMFEAVQMLMLKHARETAGGEVPITSSGDRFPHRSMPMPREQWGK ITLEFSPRSCSSHSAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RRDR+G DKK K LEVLELPGVLAPGATPLDARLAVVHGLMEKGGGGGIGAGFRFGEHLCLLSALQAVCEEW GLRRSLVSHGSVAGDGDLPDPHPSVLHDLARRCIVSGLQRK ACNPLALCTGSLPSWCVGLP
Sbjct: 1150 TGETGEEEAALALGGGQGGAEVVVAGGDAGGTVVRRYTEVDFTNGELPSGATMFEAVQMLMLKHARETAGGEVPITSSGDRFPHRSMPMPREQWGKAITLEFSPRSCSSHSAKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRDRKGMDKKGKALEVLELPGVLAPGATPLDARLAVVHGLMEKGGGGGIGAGFRFGEHLCLLSALQAVCEEWLGLRRSLVSHGSVAGDGDLPDPHPSVLHDLARRCIVSGLQRK-ACNPLALCTGSLPSWCVGLP 1489          
BLAST of mRNA_Ecto-sp13_S_contig8843.20332.1 vs. uniprot
Match: D7FHF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF3_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.000e-6
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 2
Query:   14 TIPGMVDEDSPAGPGVRIQLMSTRREMP 97
            TIPGMVDEDSPAGPGVRIQLMSTRREMP
Sbjct:  180 TIPGMVDEDSPAGPGVRIQLMSTRREMP 207          
BLAST of mRNA_Ecto-sp13_S_contig8843.20332.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.420e-5
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1
Query: 3097 KQACNPLALCTGSLPSWCVGLP 3162
            KQACNPLALCTGSLPSWCVGLP
Sbjct:    7 KQACNPLALCTGSLPSWCVGLP 28          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8843.20332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2P5_9PHAE1.390e-12596.19HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHF3_ECTSI5.000e-6100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHF2_ECTSI8.420e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8843contigEcto-sp13_S_contig8843:2..6466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3162
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002610.1
Cds size2154
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8843.20332.1prot_Ecto-sp13_S_contig8843.20332.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8843 2..5415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.3934639-CDS-Ecto-sp13_S_contig8843:1..641681464156.3934639-CDS-Ecto-sp13_S_contig8843:1..64Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 2..64 -
1681464156.4051752-CDS-Ecto-sp13_S_contig8843:879..9881681464156.4051752-CDS-Ecto-sp13_S_contig8843:879..988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 880..988 -
1681464156.415107-CDS-Ecto-sp13_S_contig8843:1346..14811681464156.415107-CDS-Ecto-sp13_S_contig8843:1346..1481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 1347..1481 -
1681464156.4289207-CDS-Ecto-sp13_S_contig8843:1920..23971681464156.4289207-CDS-Ecto-sp13_S_contig8843:1920..2397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 1921..2397 -
1681464156.4386814-CDS-Ecto-sp13_S_contig8843:2957..30451681464156.4386814-CDS-Ecto-sp13_S_contig8843:2957..3045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 2958..3045 -
1681464156.4481096-CDS-Ecto-sp13_S_contig8843:3932..41981681464156.4481096-CDS-Ecto-sp13_S_contig8843:3932..4198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 3933..4198 -
1681464156.4573424-CDS-Ecto-sp13_S_contig8843:4333..49161681464156.4573424-CDS-Ecto-sp13_S_contig8843:4333..4916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 4334..4916 -
1681464156.4667368-CDS-Ecto-sp13_S_contig8843:4982..54151681464156.4667368-CDS-Ecto-sp13_S_contig8843:4982..5415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8843 4983..5415 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.4760883-UTR-Ecto-sp13_S_contig8843:5415..62491681464156.4760883-UTR-Ecto-sp13_S_contig8843:5415..6249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8843 5416..6249 -
1681464156.485327-UTR-Ecto-sp13_S_contig8843:6292..64661681464156.485327-UTR-Ecto-sp13_S_contig8843:6292..6466Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8843 6293..6466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8843.20332.1

>prot_Ecto-sp13_S_contig8843.20332.1 ID=prot_Ecto-sp13_S_contig8843.20332.1|Name=mRNA_Ecto-sp13_S_contig8843.20332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=718bp
MAAPGPPAAASSSSNPSTRKASSSSSRGRGSSIGGRAGRRKSSAAPSPLP
SAAEAASASNAAEAAKGGGVAARSSSSSSSSNKRRRVSSPPSTSAAAGGA
AASAADSGRSKRTTGTATAGATRVVRGGGGGGGGGNPRRSSRVVPAAAAA
KSKRGGTTNKLPATGGEGDAAAVASSTAGSAKTKRQSKSKSKSKKTPSPR
QRQQPQQRQPAKRVSGKDSTGGGGRNSSRGVASPGTAPMTPVTSRASGSG
SSLGGRASGGGGGSGLPATAGGGGWQPPWRAGGSATAAAAAAAAAAAAAA
AATSVGSSSAAGGGSSTRNRSSSSSSSSSKLPLLQWTLSGGGGGGGGGGS
RKRNGKGRAGGAAEENQGKGRGHNHNSSTGEAGEEEAALALGGGQGGAEV
VVPGGDTDGTVVRTYTEVDFTNGELPSGATMFEAVQMLMLKHARETAGGE
VPITSSGDRFPHRSMPMPREQWGKTITLEFSPRSCSSHSAKPPPATSAAS
ASPGGAAGRAASAAPPASASGGPAGSGAAASSSSGSGDSATAAGSLPPAE
VSSSSSAHAGPPSAVGSAADSSSRRVGGGGGGSRRDRQGKDKKEKPLEVL
ELPGVLAPGATPLDARLAVVHGLMEKGGGGGIGAGFRFGEHLCLLSALQA
VCEEWSGLRRSLVSHGSVAGDGDLPDPHPSVLHDLARRCIVSGLQRKQAC
NPLALCTGSLPSWCVGLP
back to top

mRNA from alignment at Ecto-sp13_S_contig8843:2..6466-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8843.20332.1 ID=mRNA_Ecto-sp13_S_contig8843.20332.1|Name=mRNA_Ecto-sp13_S_contig8843.20332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8843:2..6466- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCGACCGCAGACAATCCCGGGTATGGTGGACGAGGACTCTCCCGCGG GGCCGGGGGTCCGGATCCAGCTCATGTCCACGCGTAGAGAGATGCCCCCT CCGCCTTCGGCGTCGGCGTCGGCCGCTTCGGCGGCGGCGGCAGCGGGGGG GTCGGGCTCGGGATCAGGATCAGGGTCGCAGAACCAGAGTCAACAGCAGC AGCAACAGCAGCAGCAGCAGCAGACGACTGCGTCCCAGGGCCAAGGAAGG CATGGGGGGGGGGGTCTAGCTGCGCGCCGACCGGTGTCGGCGGGCGGTCT CGCTCAGCGTCGGCCTTTGCCTGCGCCGCCTGGTACAGCTGGTGGTGGAG CTTCGGCAGCGGCGGCCAGCCGCACCAACGGCAGGGGCAACAAGGCACCG GCTACTGCGACGGCGGCGGCGGCGGCGGCGAGCGCAGCGAGGTCTTCTTC GGAGTCCCCGCCCCCCCGCGCGGCCGCGGCAAAGGCCGGCACCGCTGCTG CTGCTGCAAAATCTGCAAAAGCTGGTCGTGCGACTACCGGTAGCGGCGGT GGCGGTGGCGGTGGCGCGGGAAGCGGTGCCAAGGAGCCTCGAAGCCGACG CATTGTCCGCGGCAGCAGGATTCCTTCTTCTTCTTCTTCCGGCACCGGCG GCGCGGGGGCGGCGGTAGGCGGGGGCTCTCGCCCGGTGACCCGGGGGCGG CGGACCAGGACTACTGGAGAAGGTGCTGGTTCGGCGACGGCCGGTCACGG GTCGTCGTCGTCGTCTTCCTCAAAGAGAAAGCGAGAAGACTCTGGGGTTG CGGCCGCCGCCGCCGAGGGGGGAAGGGGAAGAAGCTCCGTCGCTACTAGC GCGGACGAAGCCGCGACACCGGCGGCGGCAACGCCTGCGGCGGCGACGCA GGGAAGGACGTTGCGGGCCAGAAGAACTCGTTCCTCGTCCACCTCGGCTT CGTCGTCGTCGGCAGCTCCTGCGGGAGCGGCGGGTACAGCGGCAACGTCG TCGAGGGGGCGTGTTTCGACTCGAGGGGGTGTGGCCGCCGCTGCTATCGG AATGGCCGCTCCCGGCCCCCCTGCCGCCGCTTCTTCTTCTTCTAACCCTT CGACACGCAAGGCTTCGTCGTCGTCTTCGAGAGGTCGCGGTAGCAGCATC GGCGGCCGGGCGGGCCGCAGGAAGTCCTCCGCTGCTCCGTCGCCGCTGCC TTCGGCGGCGGAGGCGGCTTCTGCCAGCAACGCCGCTGAAGCGGCGAAAG GCGGGGGCGTGGCAGCACGGTCGTCGTCATCATCTTCATCGTCGAACAAG AGGCGGCGAGTCTCGTCCCCGCCGTCGACGTCCGCCGCAGCGGGAGGCGC GGCGGCGTCGGCGGCGGATAGCGGGAGGTCGAAGCGAACAACGGGGACGG CGACTGCTGGGGCGACGAGGGTAGTACGCGGAGGTGGCGGCGGTGGCGGC GGCGGTAACCCGAGGAGAAGCTCCCGCGTCGTACGTGGGTTATCGTCTTC CGCGTCGCCGCCCCCTTCGATGCCCGCCGCCGCCGCCGCCGCCGCAGCAG CAGCAGCAGCAGCAGCGAAGTCGAAGAGAGGCGGCACCACCAACAAGCTC CCTGCTACTGGCGGTGAGGGCGATGCGGCTGCCGTTGCGTCGTCAACGGC GGGTTCTGCGAAGACAAAGCGGCAGAGCAAGAGCAAAAGCAAGAGCAAGA AGACCCCATCGCCGCGTCAACGGCAGCAGCCGCAGCAGAGGCAGCCGGCT AAGAGGGTGAGCGGCAAGGATAGTACGGGCGGCGGTGGGCGCAACAGTAG CAGGGGGGTAGCAAGCCCCGGTACCGCTCCGATGACCCCGGTGACCAGCC GCGCCAGTGGCAGCGGTAGCAGCCTTGGGGGTAGAGCTAGCGGCGGCGGC GGTGGGAGCGGACTCCCCGCCACCGCCGGCGGTGGAGGGTGGCAGCCACC GTGGCGTGCGGGGGGCTCTGCTACAGCTGCCGCTGCTGCTGCTGCTGCTG CTGCCGCGGCGGCAGCGGCGGCGACTTCGGTGGGGAGCAGCAGCGCCGCC GGCGGGGGCTCGTCGACGAGAAATCGGTCTTCATCCTCGTCTTCGTCTTC GAGCAAACTCCCTCTCCTGCAGTGGACGCTGAGGTACCACTGGCCGGACA CCGACGTGGCGGCAGCAGCCTCTGCCGCCGCCTCCGATTCGCCCGCTGCC AACACCGGCGCGGTCGCGGTCGGACCCGGCTCCGCTGCCTCGTCGTCCGC AATGGAAGGCGGTGTCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGTA GCCGCAAGAGAAACGGCAAGGGGCGAGCCGGGGGAGCCGCGGAGGAGAAT CAGGGAAAGGGAAGGGGGCACAACCACAACAGCAGCACGGGGGAGGCGGG AGAGGAGGAGGCAGCTCTGGCGCTGGGAGGGGGGCAAGGAGGAGCCGAGG TGGTGGTGCCCGGGGGTGACACAGACGGGACTGTCGTACGGACGTATACG GAGGTGGACTTCACGAACGGGGAGCTTCCTTCCGGTGAGAGACTCGTACC CGCCGTCCCCCGCGCCCCTCCCCGAGACAACACAAACCCCCTGATGCGCA CGTGGCGTGTGTCGCGGTTACTTGTAGGTCGACCCCGCGAAGTTGGCGGC TACACCTACAGCAGTGTGCGTGATGCTGCGAGCTTGTTTTTCGCACGGAA ACGGTTGTTGGTGTTGTATTTGTTGCAGTTGTTGCAGTTGTTGTTGTTGT TGTCTTCTACCGGGAATCATCCCGGTCTCTTGTCGATGTGCCTTCCGACG TCCGTACCGGTCCAACTGACTCGGAACGCCTTTCATGGTCACGGCCGCTA CTTTTGTACATACCCCCTCAAGGGTTACTACCTTAACAACGTTGCAAGGT GGTTCTATGCCCGACTGTCGCGACGAGGTTGTTGTTGTTGTTGTTGTTGT TGTTGTCTTCACACGTTACGAAGCTTTGCTGGCCTCCTCTCTGTACGTTC TCGTATCCGTACCGGTGCAACAGACGCAGACGCAGACGCCTTTGGTGGTG AAGGGCCGACCACCAAGAAAACGGGACACGTTTCATAGAATTCCAACCAC AGAAATGTGTGTGTGTGTTCATCCCATCTTATCTGGCGGCAGCCAGCCTA CTGTCTGTTGCCTTTCGGTGTGTGAGGTATATATCTCACCGATCACCCGG GGTTGAAGCAGAGGAAGGTCACACACAGAAGCGAGGAACGACCGAGAATT CAACGTTTTCGTTGTATATTTTTCTGAATTACAGCACAATAAAATCCATC TCTATCCACAGAAAAGAGTCGATAAGGATAAAGTGGTAATTAAGTCATGA ATTCGTTGTTTGTCTTGTAATCCTGCGGCGTCTCCACACCATGTCGGCGA CCGCTTACCTGTGCGCGACAGGCGCGACAATGTTCGAGGCTGTCCAGATG CTGATGCTGAAGCACGCTCGAGAGACGGCCGGGGGCGAAGTCCCGATAAC CAGTAGCGGGTACGTGTGTACATGTGTGCGTGTGCGCGCCCTTATTTCCT TCTCTGCCTGTTTTTTTTTGTCCTCCTCGGCACGTGGTTATTGTTGTTGT CTCTCGTTTGCCGTAGGGCGGGCCGCTTCTTGATGCTATTGTCACGTCGA ACACGAGACAGAGCCCCCCACCCCCCCAACCATAACAAAAAATGTAGGTG ATGACAAGGGGGGGCACGCACGGTGACGTGTAGGCTGGACGTGTAGGCTG GCTCCTTCACGTTTTCTCTCTGGCTGTGTTTTGCGGTGGCTGTGTGCGTT GACTGTCTCTCTCTCGGCCTCGAACTCGGCCTCGGCCTTTGCCTCTGCCT TTCTGCCTCTGCTTGTATCTGCCTCTGCCTATCTGCCTCTGCCTGTCTGT CTCTGCTTGCCTGCCTCTGCCTGTGTTTCACCTCTCGTCTCTCCCCCGTC GCCCCCCTGCCGCCGCTGCCACTCTCTCTCTCTCTCTTTTTCTATCGGTC GCCATCGATGCATCTCTCGCTTCGTGGATACCCCCCAAAAATCTCGCTCA AAATCGCACGCGCGCGCAGGGACCGTTTCCCGCACCGCTCCATGCCAATG CCGCGAGAGCAGTGGGGTAAGACCATCACGTTGGAGTTCTCGCCCCGCTC CTGCTCGTCGCATTCTGCGAAGCCCCCGCCCGCCACCTCTGCCGCGTCCG CATCCCCCGGCGGCGCCGCCGGGAGAGCCGCTAGCGCAGCACCCCCTGCT AGCGCTAGCGGCGGCCCCGCTGGTTCTGGAGCTGCGGCGTCTAGCAGCAG CGGTAGCGGCGACAGCGCCACCGCCGCGGGTTCCTTGCCACCGGCGGAGG TGTCTTCTTCTTCCAGTGCCCACGCAGGTCCTCCTTCCGCTGTAGGCTCG GCGGCGGATTCGTCGTCAAGACGTGTGGGCGGTGGTGGCGGCGGTAGTCG CAGAGACAGGCAGGGCAAGGACAAGAAGGAGAAGCCCTTGGAGGTGCTGG AGCTACCAGGCGTGCTCGCCCCGGGGGCCACACCCCTCGACGCCAGGTGC CATGCTGCTGCTGTTGTTGGCCTTGTGGATGTTGCTGTTGCTTTTGTTCT GGTTGCAGGTGGTGGTGGTTGTCAGTGTCGGTGCCGGTGTTTATTGCTGT TGTTGTTATGGTGGCGGTAGTCGTATGTTGTTGTTCTTGACACAGACTCG ATTTTTCGGCGTGTCTGTGGTTGTAGATGCCGGCGTTGTTGTTGTTGTGA TCATCAAGTGGTTGTTCGTGAGATGTGACAACCAGTGTTGTGTGTTGCTC TGCACTTCGGTTCGCTATTGGCTCTCGCTGTTGTCTTGAGGAGGAGGCGG AGCGATGACACAATTGGGAGAACTTCGTCATCCATCGGTTCAGCACCAGG GTGTGGTACCGTCGACATCGCAGTGGCCCCGATAATGTCGGCAAATCTAA CCCTTATTTTTGTGTTATTTTTGCTGCACACCAAGGCTCGCCGTTGTGCA CGGGCTGATGGAGAAGGGAGGAGGCGGCGGAATCGGTGCTGGGTTCCGTT TCGGCGAACACCTTTGCCTCCTGAGCGCCTTGCAGGCGGTTTGTGAGGAG TGGAGCGGGCTCCGCAGGAGGTGGGATAGTTGTTGTTATGGGTGCGGTTT GCTGTTGTTGTGGTGGCGGTGTTGCTATTTTGCGTTATTGCTATTTTGTC GTTCCTACTGCTTTTTGTTGTTGCTGCTGCTGCAGGCTGGCTGGCTGGCT GGCTGGCTTGCAGGCTTCACTCGATGAATGATATGAGTCGATGAAGGACA TGCCAAGAGTGGCAACTTCGACTCGTTGGTTCTGCCAGAGCCACCACAGC ATCACAGATTGGTGTGATATTGTAGGTCCTGTGGGAAAGTGCTCCGTCCT CTCGAGATGATGCGTTGTCAATAGTCTTCAAACTATGGGATGCAAAACAT AAGTACGCCCTCCCGCCCTCCCCTCCAGTCTCGTGAGCCACGGCAGCGTC GCCGGGGACGGTGATCTCCCGGACCCCCACCCTTCGGTTCTGCACGATCT AGCGAGGCGGTGCATCGTTTCGGGGCTACAGCGGAAGGTTTCGCGTCAGG CAAGATAGAGAGACAGAGACAGAGACAGAGACAGAGACAAAGAGATCACA TTTTTTTTCTTCTTCTTCGTGATACTGTAGTTGACTTGTTTTGACTTGCC GACCGTTCGGGTCCATTTTTATCTTCGTACACCTTTTTTGGGTACGTAAG CCTGTGACCACGGGAATCGACCCGTCAAGTGTTAAGACTTTAGTACGGAC AGAAGAAGGTACTGGGTGGAGAGAAACGGAACGGCTTTTGATTTGAAGAC AACAACTGCTATGCCATCTTTTTTGCGGACGTCGGTCGGCCCTTGCAACG CCTTTTCTTTGTTACAATGTTTCTGACGCACGCCGGCCGGGGTCACGCAG ACCGACGCTATTAAGGACGGGTGCTGCCTTGCCGGAGAAGAAAGAAAAGG CATCAATAAGATGAAAGAAAATTAAAACGGGGGGAAAATGCTGCTGCAAA GTATTAAACGTGTGTCGAGACTGACTCGCGATATCCATCTCTTCCCACCG AATGAGACCCGACTGACTACATTTTTGTATTTTTTTTTCTTTTTTTCCAT CGTCCGGGATTTTTTTTTTTTATCATCGCCCGAGGTTCACACGAAGCGGG CGTGGAACCCCTCGGAGCTGTGCACGGGGTCACTCCCCTCTTGGAACGAA CGTTTCATGATCACTTCTTTTTTGTTTGGTTCATGACACCCACAACTATT TTTCTTGCCTTTTGTTTCTCCTCTTTTTCTCTGTTTTTCGCGTGCGCTGG TCGTTGTTGTTGTTTTTCGTTGTTCCTTGCGATGGTTCCGGGCTACTCCA AGCAGGCGTGCAACCCGTTGGCGCTGTGCACGGGTTCCCTCCCCTCCTGG TGCGTAGGCCTCCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8843:2..6466-

>mRNA_Ecto-sp13_S_contig8843.20332.1 ID=mRNA_Ecto-sp13_S_contig8843.20332.1|Name=mRNA_Ecto-sp13_S_contig8843.20332.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8843:2..6466- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCTCCCGGCCCCCCTGCCGCCGCTTCTTCTTCTTCTAACCCTTC
GACACGCAAGGCTTCGTCGTCGTCTTCGAGAGGTCGCGGTAGCAGCATCG
GCGGCCGGGCGGGCCGCAGGAAGTCCTCCGCTGCTCCGTCGCCGCTGCCT
TCGGCGGCGGAGGCGGCTTCTGCCAGCAACGCCGCTGAAGCGGCGAAAGG
CGGGGGCGTGGCAGCACGGTCGTCGTCATCATCTTCATCGTCGAACAAGA
GGCGGCGAGTCTCGTCCCCGCCGTCGACGTCCGCCGCAGCGGGAGGCGCG
GCGGCGTCGGCGGCGGATAGCGGGAGGTCGAAGCGAACAACGGGGACGGC
GACTGCTGGGGCGACGAGGGTAGTACGCGGAGGTGGCGGCGGTGGCGGCG
GCGGTAACCCGAGGAGAAGCTCCCGCGTCGTACCAGCAGCAGCAGCAGCG
AAGTCGAAGAGAGGCGGCACCACCAACAAGCTCCCTGCTACTGGCGGTGA
GGGCGATGCGGCTGCCGTTGCGTCGTCAACGGCGGGTTCTGCGAAGACAA
AGCGGCAGAGCAAGAGCAAAAGCAAGAGCAAGAAGACCCCATCGCCGCGT
CAACGGCAGCAGCCGCAGCAGAGGCAGCCGGCTAAGAGGGTGAGCGGCAA
GGATAGTACGGGCGGCGGTGGGCGCAACAGTAGCAGGGGGGTAGCAAGCC
CCGGTACCGCTCCGATGACCCCGGTGACCAGCCGCGCCAGTGGCAGCGGT
AGCAGCCTTGGGGGTAGAGCTAGCGGCGGCGGCGGTGGGAGCGGACTCCC
CGCCACCGCCGGCGGTGGAGGGTGGCAGCCACCGTGGCGTGCGGGGGGCT
CTGCTACAGCTGCCGCTGCTGCTGCTGCTGCTGCTGCCGCGGCGGCAGCG
GCGGCGACTTCGGTGGGGAGCAGCAGCGCCGCCGGCGGGGGCTCGTCGAC
GAGAAATCGGTCTTCATCCTCGTCTTCGTCTTCGAGCAAACTCCCTCTCC
TGCAGTGGACGCTGAGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGGTAGC
CGCAAGAGAAACGGCAAGGGGCGAGCCGGGGGAGCCGCGGAGGAGAATCA
GGGAAAGGGAAGGGGGCACAACCACAACAGCAGCACGGGGGAGGCGGGAG
AGGAGGAGGCAGCTCTGGCGCTGGGAGGGGGGCAAGGAGGAGCCGAGGTG
GTGGTGCCCGGGGGTGACACAGACGGGACTGTCGTACGGACGTATACGGA
GGTGGACTTCACGAACGGGGAGCTTCCTTCCGGCGCGACAATGTTCGAGG
CTGTCCAGATGCTGATGCTGAAGCACGCTCGAGAGACGGCCGGGGGCGAA
GTCCCGATAACCAGTAGCGGGGACCGTTTCCCGCACCGCTCCATGCCAAT
GCCGCGAGAGCAGTGGGGTAAGACCATCACGTTGGAGTTCTCGCCCCGCT
CCTGCTCGTCGCATTCTGCGAAGCCCCCGCCCGCCACCTCTGCCGCGTCC
GCATCCCCCGGCGGCGCCGCCGGGAGAGCCGCTAGCGCAGCACCCCCTGC
TAGCGCTAGCGGCGGCCCCGCTGGTTCTGGAGCTGCGGCGTCTAGCAGCA
GCGGTAGCGGCGACAGCGCCACCGCCGCGGGTTCCTTGCCACCGGCGGAG
GTGTCTTCTTCTTCCAGTGCCCACGCAGGTCCTCCTTCCGCTGTAGGCTC
GGCGGCGGATTCGTCGTCAAGACGTGTGGGCGGTGGTGGCGGCGGTAGTC
GCAGAGACAGGCAGGGCAAGGACAAGAAGGAGAAGCCCTTGGAGGTGCTG
GAGCTACCAGGCGTGCTCGCCCCGGGGGCCACACCCCTCGACGCCAGGCT
CGCCGTTGTGCACGGGCTGATGGAGAAGGGAGGAGGCGGCGGAATCGGTG
CTGGGTTCCGTTTCGGCGAACACCTTTGCCTCCTGAGCGCCTTGCAGGCG
GTTTGTGAGGAGTGGAGCGGGCTCCGCAGGAGTCTCGTGAGCCACGGCAG
CGTCGCCGGGGACGGTGATCTCCCGGACCCCCACCCTTCGGTTCTGCACG
ATCTAGCGAGGCGGTGCATCGTTTCGGGGCTACAGCGGAAGCAGGCGTGC
AACCCGTTGGCGCTGTGCACGGGTTCCCTCCCCTCCTGGTGCGTAGGCCT
CCCG
back to top