mRNA_Ecto-sp13_S_contig884.20329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig884.20329.1
Unique NamemRNA_Ecto-sp13_S_contig884.20329.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A6H5KDX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-13
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLEGQ 126
            GKYSEAEPLFKQT AIYEKVLGPEHP VA SLNN AVFLE Q
Sbjct:  160 GKYSEAEPLFKQTQAIYEKVLGPEHPHVAQSLNNPAVFLEDQ 201
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A0J9EWN6_9CYAN (Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-951 TaxID=1637645 RepID=A0A0J9EWN6_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 7.600e-10
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLEGQG 129
            G+Y+EAEPL++++LAI EKVLG  HPDVALSLNNLA F   QG
Sbjct:   20 GRYNEAEPLYQRSLAIREKVLGENHPDVALSLNNLASFYLSQG 62
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A6M0ALV0_9CYAN (Tetratricopeptide repeat protein n=1 Tax=Moorena sp. SIO4G2 TaxID=2607820 RepID=A0A6M0ALV0_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLEGQG 129
            GKYSEA PL ++ L I +++LG EHPDVA+SLNNLA F E QG
Sbjct:   31 GKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQG 73
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A3E2H371_SCYLI (PNPLA domain-containing protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H371_SCYLI)

HSP 1 Score: 62.4 bits (150), Expect = 1.880e-9
Identity = 26/40 (65.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLE 120
            GKYSEAEP+++QTLA+ +KVLGPEHP+  +S+NNLA+ L+
Sbjct:  676 GKYSEAEPIYRQTLALRKKVLGPEHPNTLMSMNNLAMLLD 715
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.620e-9
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLE 120
            GKY+EAEPL++++LAI EKVLGPEHPDVA SL+N A  LE
Sbjct:  694 GKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLE 733
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A8J7LFL1_9NOST (Tetratricopeptide repeat-containing protein n=1 Tax=Dendronalium phyllosphericum CENA369 TaxID=1725256 RepID=A0A8J7LFL1_9NOST)

HSP 1 Score: 59.3 bits (142), Expect = 2.640e-9
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLA 108
            G+YSEAEPL+ Q LA++ K+LG EHPDVALSLNNLA
Sbjct:    3 GRYSEAEPLYIQALALWRKLLGEEHPDVALSLNNLA 38
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A1U7N198_9CYAN (Uncharacterized protein n=3 Tax=Moorena TaxID=1155738 RepID=A0A1U7N198_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 3.500e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLEGQG 129
            GKYSEA PL ++ L I +++LG EHPDVA+SLNNLA F E QG
Sbjct:   75 GKYSEAIPLAERALEIRQEILGEEHPDVAISLNNLAGFYESQG 117
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: X0XF05_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0XF05_9ZZZZ)

HSP 1 Score: 60.8 bits (146), Expect = 3.650e-9
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAV 111
            G YS+AEPL+K+ LAI EK LGPEHPDVA SLNNLA+
Sbjct:    9 GDYSKAEPLYKRALAIMEKALGPEHPDVATSLNNLAL 45
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A3M0WY91_9BACT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M0WY91_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 4.200e-9
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAV 111
            G Y +AEPL+K++L IYEK LG EHPDVALSLNNLA+
Sbjct:    6 GLYDKAEPLYKRSLEIYEKTLGQEHPDVALSLNNLAL 42
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BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Match: A0A2W4QJT5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 4.320e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLA 108
            GKY+EAEPL++ +LAI EK LG +HPDVA+SLNNLA
Sbjct:    9 GKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNNLA 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig884.20329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDX1_9PHAE1.010e-1388.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A0J9EWN6_9CYAN7.600e-1069.77Kinesin (Fragment) n=1 Tax=Limnoraphis robusta CS-... [more]
A0A6M0ALV0_9CYAN1.290e-965.12Tetratricopeptide repeat protein n=1 Tax=Moorena s... [more]
A0A3E2H371_SCYLI1.880e-965.00PNPLA domain-containing protein (Fragment) n=1 Tax... [more]
D7G722_ECTSI2.620e-972.50NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A8J7LFL1_9NOST2.640e-975.00Tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A1U7N198_9CYAN3.500e-965.12Uncharacterized protein n=3 Tax=Moorena TaxID=1155... [more]
X0XF05_9ZZZZ3.650e-975.68Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3M0WY91_9BACT4.200e-972.97Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A2W4QJT5_9GAMM4.320e-972.22Uncharacterized protein n=1 Tax=Candidatus Methylu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig884contigEcto-sp13_S_contig884:17773..18336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.4
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D7G722
Model size253
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size252
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464156.2270048-CDS-Ecto-sp13_S_contig884:17773..178991681464156.2270048-CDS-Ecto-sp13_S_contig884:17773..17899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig884 17774..17899 -
1681464156.2409284-CDS-Ecto-sp13_S_contig884:18210..183361681464156.2409284-CDS-Ecto-sp13_S_contig884:18210..18336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig884 18211..18336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig884.20329.1prot_Ecto-sp13_S_contig884.20329.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig884 17774..18336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig884.20329.1

>prot_Ecto-sp13_S_contig884.20329.1 ID=prot_Ecto-sp13_S_contig884.20329.1|Name=mRNA_Ecto-sp13_S_contig884.20329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
GKYSEAEPLFKQTLAIYEKVLGPEHPDVALSLNNLAVFLEGQGKYSEAEP
LFEQSLTMREKMLGPEHPHVAYSLSNQARLLQRE
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mRNA from alignment at Ecto-sp13_S_contig884:17773..18336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig884.20329.1 ID=mRNA_Ecto-sp13_S_contig884.20329.1|Name=mRNA_Ecto-sp13_S_contig884.20329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig884:17773..18336- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACAGTGAGGCCGAGCCTCTGTTTAAACAGACACTAGCCATCTA
TGAGAAAGTGCTAGGTCCGGAGCACCCTGATGTGGCCCTGTCGCTCAACA
ACCTGGCGGTGTTCTTGGAGGGCCAGGTGAGAAACGATGTTTTTTTTAGC
GTCTAGGAGGACATACATAGTTCTAGATATCATTTGAAGTGACATCTGAC
TCTCTGCCGCGCTGTTCACCACAAATGATGGCAAAGAGTGTTATCAATCG
AGCCATTCTATGAGCGGGAACAAACCATCGCATGGAAGGTGTTGGGCAAG
GAGCACCGGATGTGGCCCAGACGCCTAACAACCGTTTGGGTTTTGGTTGA
GAAGAATCCGATCCCGGGTTAGCTGTAGATCCCACTTCCCGGAATTATGC
ATCCAACTCTGCCACGCCGTCTACGATTGAGTGCTAGGGCAAGTACAGTG
AGGCAGAGCCTCTGTTTGAGCAGTCACTAACCATGCGTGAGAAGATGCTG
GGCCCGGAGCATCCTCATGTGGCCTATTCCCTCAGTAACCAGGCGAGGTT
ATTGCAGCGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig884:17773..18336-

>mRNA_Ecto-sp13_S_contig884.20329.1 ID=mRNA_Ecto-sp13_S_contig884.20329.1|Name=mRNA_Ecto-sp13_S_contig884.20329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig884:17773..18336- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGTACAGTGAGGCCGAGCCTCTGTTTAAACAGACACTAGCCATCTA
TGAGAAAGTGCTAGGTCCGGAGCACCCTGATGTGGCCCTGTCGCTCAACA
ACCTGGCGGTGTTCTTGGAGGGCCAGGGCAAGTACAGTGAGGCAGAGCCT
CTGTTTGAGCAGTCACTAACCATGCGTGAGAAGATGCTGGGCCCGGAGCA
TCCTCATGTGGCCTATTCCCTCAGTAACCAGGCGAGGTTATTGCAGCGCG
AG
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