mRNA_Ecto-sp13_S_contig8839.20326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: D8LB20_ECTSI (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB20_ECTSI) HSP 1 Score: 194 bits (493), Expect = 3.330e-58 Identity = 96/104 (92.31%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
L +GVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYR G YKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK
Sbjct: 108 LFNKGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYR----GKYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 207
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A6H5L4V1_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V1_9PHAE) HSP 1 Score: 113 bits (282), Expect = 6.280e-28 Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query: 151 RIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
R+G YKVRLFDITQ+RWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK
Sbjct: 15 RVGKYKVRLFDITQERWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 68
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A6U5W761_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5W761_GUITH) HSP 1 Score: 103 bits (258), Expect = 3.950e-24 Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 25 EDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
ED+ QG LGDCWL+AA+A L+ GAI++ F E S R G YK++L+D ++ W + +DD +PT HG PIFA+PNG+E+WV+LLEKA AK
Sbjct: 81 EDIAQGQLGDCWLLAALACLS-ERAGAIERCFETREISVR----GLYKLKLYDGQREEWVRMIIDDYLPTEHGQPIFAQPNGREIWVLLLEKAFAK 171
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A836C565_9CHLO (Calpain catalytic domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C565_9CHLO) HSP 1 Score: 104 bits (259), Expect = 4.890e-24 Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPT-RHGNPIFAKPNGKELWVVLLEKAVAK 312
L V+ D+ QG LGDCWL++A+A LA PGAI+++F E + G YK+RL+D + +W T+T+DD +P G PIFAKPNG E WVVLLEKAVAK
Sbjct: 125 LFADDVEPADICQGQLGDCWLMSALACLA-CQPGAIQQVFQTKEWTM----YGRYKLRLYDGNRKKWSTVTIDDYLPCGADGQPIFAKPNGDEAWVVLLEKAVAK 224
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: F0XY34_AURAN (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY34_AURAN) HSP 1 Score: 97.1 bits (240), Expect = 8.240e-24 Identity = 52/102 (50.98%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 13 GVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHG--NPIFAKPNGKELWVVLLEKAVAK 312
GV +DV QG LGDCWL+AA A A PG I++ F +E ++R G Y V LFD W + VDD IP + G +PIF KP G ELWV+LLEKA AK
Sbjct: 20 GVSPDDVDQGTLGDCWLLAAFAA-AAEFPGTIRRAFLTTEANWR----GRYVVTLFDGATGHWIKLVVDDRIPCKAGTNDPIFCKPAGSELWVLLLEKAFAK 116
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A7S0N3J2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3J2_9CHLO) HSP 1 Score: 103 bits (256), Expect = 1.210e-23 Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 16 VKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGN--PIFAKPNGKELWVVLLEKAVAK 312
++ +DV QGA+GDCWL+AA A LA PGAI+K+F E + R+ Y+VRL+D RW T+T+DD IP G F+KPNG E+WV+LLEKA AK
Sbjct: 127 IEPQDVAQGAVGDCWLIAAFACLA-EFPGAIQKVFVTREWNTRR----KYQVRLYDGFHQRWETVTIDDRIPVEKGTNKAAFSKPNGNEMWVILLEKAFAK 222
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: D8TN36_VOLCA (Calpain catalytic domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN36_VOLCA) HSP 1 Score: 97.8 bits (242), Expect = 2.450e-23 Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPT-RHGNPIFAKPNGKELWVVLLEKAVAK 312
L ++ D+ QG LGDCWL++A+A LA GA++++F E + G YKVRL+D ++ W TI VDD IP + G PIFAKPNG E WV+LLEKA+AK
Sbjct: 63 LFADRIEPGDICQGQLGDCWLMSALACLAN-QEGAVQQVFLTKEYNA----YGKYKVRLYDAPKEAWVTIAVDDWIPCGQDGRPIFAKPNGDEAWVLLLEKAMAK 162
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: C1MT99_MICPC (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT99_MICPC) HSP 1 Score: 101 bits (252), Expect = 4.390e-23 Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 4 LMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNP--IFAKPNGKELWVVLLEKAVAK 312
L G++ ED+ QGALGDCWLVA +A LA PGAI+K+F E + +G Y VRL+D +W T+TVDD IP + G +F PNG ELW +LLEKA AK
Sbjct: 122 LFHGIEPEDLCQGALGDCWLVAGLACLA-EYPGAIRKVFRECEYND----VGKYHVRLWDGRVGKWVTVTVDDRIPVKAGTKETVFMHPNGCELWAILLEKAFAK 221
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: C1E5L8_MICCC (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E5L8_MICCC) HSP 1 Score: 101 bits (252), Expect = 4.790e-23 Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 16 VKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHG--NPIFAKPNGKELWVVLLEKAVAK 312
++ D++QG LGDCWL+AA+ATLA P AI+K F N E S R G Y+VRL+D + +W I +DD IP + G +PIF KPNG+ELW +LLEKA AK
Sbjct: 130 IEPADLRQGHLGDCWLLAALATLA-EHPVAIRKCFLNREYSSR----GKYRVRLYDGLKRQWVIIVIDDYIPVKKGTKDPIFVKPNGEELWAMLLEKAFAK 225
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: F0YAK9_AURAN (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK9_AURAN) HSP 1 Score: 93.6 bits (231), Expect = 8.770e-23 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 28 DVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGN--PIFAKPNGKELWVVLLEKAVAK 312
DVKQG LGDCWL++A+A+ A P I++LF G Y++RL+D+ +++W I +DD IP N P F KPNG ELWV+LLEKA AK
Sbjct: 1 DVKQGGLGDCWLLSAIASCAEAHPEIIRRLFITQFVEP----CGVYRIRLYDVRKEKWVVIVIDDRIPMDDANARPRFTKPNGNELWVMLLEKAFAK 93 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8839.20326.1 >prot_Ecto-sp13_S_contig8839.20326.1 ID=prot_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp MQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIback to top mRNA from alignment at Ecto-sp13_S_contig8839:1296..2228- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8839.20326.1 ID=mRNA_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8839:1296..2228- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8839:1296..2228- >mRNA_Ecto-sp13_S_contig8839.20326.1 ID=mRNA_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8839:1296..2228- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |