mRNA_Ecto-sp13_S_contig8839.20326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8839.20326.1
Unique NamemRNA_Ecto-sp13_S_contig8839.20326.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: D8LB20_ECTSI (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB20_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 3.330e-58
Identity = 96/104 (92.31%), Postives = 97/104 (93.27%), Query Frame = 1
Query:    1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
            L  +GVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYR    G YKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK
Sbjct:  108 LFNKGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYR----GKYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 207          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A6H5L4V1_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4V1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 6.280e-28
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  151 RIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
            R+G YKVRLFDITQ+RWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK
Sbjct:   15 RVGKYKVRLFDITQERWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 68          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A6U5W761_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5W761_GUITH)

HSP 1 Score: 103 bits (258), Expect = 3.950e-24
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   25 EDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAVAK 312
            ED+ QG LGDCWL+AA+A L+    GAI++ F   E S R    G YK++L+D  ++ W  + +DD +PT HG PIFA+PNG+E+WV+LLEKA AK
Sbjct:   81 EDIAQGQLGDCWLLAALACLS-ERAGAIERCFETREISVR----GLYKLKLYDGQREEWVRMIIDDYLPTEHGQPIFAQPNGREIWVLLLEKAFAK 171          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A836C565_9CHLO (Calpain catalytic domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C565_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 4.890e-24
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPT-RHGNPIFAKPNGKELWVVLLEKAVAK 312
            L    V+  D+ QG LGDCWL++A+A LA   PGAI+++F   E +      G YK+RL+D  + +W T+T+DD +P    G PIFAKPNG E WVVLLEKAVAK
Sbjct:  125 LFADDVEPADICQGQLGDCWLMSALACLA-CQPGAIQQVFQTKEWTM----YGRYKLRLYDGNRKKWSTVTIDDYLPCGADGQPIFAKPNGDEAWVVLLEKAVAK 224          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: F0XY34_AURAN (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY34_AURAN)

HSP 1 Score: 97.1 bits (240), Expect = 8.240e-24
Identity = 52/102 (50.98%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   13 GVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHG--NPIFAKPNGKELWVVLLEKAVAK 312
            GV  +DV QG LGDCWL+AA A  A   PG I++ F  +E ++R    G Y V LFD     W  + VDD IP + G  +PIF KP G ELWV+LLEKA AK
Sbjct:   20 GVSPDDVDQGTLGDCWLLAAFAA-AAEFPGTIRRAFLTTEANWR----GRYVVTLFDGATGHWIKLVVDDRIPCKAGTNDPIFCKPAGSELWVLLLEKAFAK 116          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: A0A7S0N3J2_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N3J2_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 1.210e-23
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   16 VKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGN--PIFAKPNGKELWVVLLEKAVAK 312
            ++ +DV QGA+GDCWL+AA A LA   PGAI+K+F   E + R+     Y+VRL+D    RW T+T+DD IP   G     F+KPNG E+WV+LLEKA AK
Sbjct:  127 IEPQDVAQGAVGDCWLIAAFACLA-EFPGAIQKVFVTREWNTRR----KYQVRLYDGFHQRWETVTIDDRIPVEKGTNKAAFSKPNGNEMWVILLEKAFAK 222          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: D8TN36_VOLCA (Calpain catalytic domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TN36_VOLCA)

HSP 1 Score: 97.8 bits (242), Expect = 2.450e-23
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 LLMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPT-RHGNPIFAKPNGKELWVVLLEKAVAK 312
            L    ++  D+ QG LGDCWL++A+A LA    GA++++F   E +      G YKVRL+D  ++ W TI VDD IP  + G PIFAKPNG E WV+LLEKA+AK
Sbjct:   63 LFADRIEPGDICQGQLGDCWLMSALACLAN-QEGAVQQVFLTKEYNA----YGKYKVRLYDAPKEAWVTIAVDDWIPCGQDGRPIFAKPNGDEAWVLLLEKAMAK 162          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: C1MT99_MICPC (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT99_MICPC)

HSP 1 Score: 101 bits (252), Expect = 4.390e-23
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 LMQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGNP--IFAKPNGKELWVVLLEKAVAK 312
            L  G++ ED+ QGALGDCWLVA +A LA   PGAI+K+F   E +     +G Y VRL+D    +W T+TVDD IP + G    +F  PNG ELW +LLEKA AK
Sbjct:  122 LFHGIEPEDLCQGALGDCWLVAGLACLA-EYPGAIRKVFRECEYND----VGKYHVRLWDGRVGKWVTVTVDDRIPVKAGTKETVFMHPNGCELWAILLEKAFAK 221          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: C1E5L8_MICCC (Calcium-dependent cytoplasmic cysteine proteinase, papain-like protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E5L8_MICCC)

HSP 1 Score: 101 bits (252), Expect = 4.790e-23
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   16 VKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHG--NPIFAKPNGKELWVVLLEKAVAK 312
            ++  D++QG LGDCWL+AA+ATLA   P AI+K F N E S R    G Y+VRL+D  + +W  I +DD IP + G  +PIF KPNG+ELW +LLEKA AK
Sbjct:  130 IEPADLRQGHLGDCWLLAALATLA-EHPVAIRKCFLNREYSSR----GKYRVRLYDGLKRQWVIIVIDDYIPVKKGTKDPIFVKPNGEELWAMLLEKAFAK 225          
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Match: F0YAK9_AURAN (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK9_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 8.770e-23
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   28 DVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARIGNYKVRLFDITQDRWRTITVDDNIPTRHGN--PIFAKPNGKELWVVLLEKAVAK 312
            DVKQG LGDCWL++A+A+ A   P  I++LF            G Y++RL+D+ +++W  I +DD IP    N  P F KPNG ELWV+LLEKA AK
Sbjct:    1 DVKQGGLGDCWLLSAIASCAEAHPEIIRRLFITQFVEP----CGVYRIRLYDVRKEKWVVIVIDDRIPMDDANARPRFTKPNGNELWVMLLEKAFAK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8839.20326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB20_ECTSI3.330e-5892.31Calcium-dependent cytoplasmic cysteine proteinase,... [more]
A0A6H5L4V1_9PHAE6.280e-2894.44Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6U5W761_GUITH3.950e-2452.08Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A836C565_9CHLO4.890e-2451.43Calpain catalytic domain-containing protein n=1 Ta... [more]
F0XY34_AURAN8.240e-2450.98Calpain catalytic domain-containing protein (Fragm... [more]
A0A7S0N3J2_9CHLO1.210e-2351.49Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
D8TN36_VOLCA2.450e-2349.52Calpain catalytic domain-containing protein n=1 Ta... [more]
C1MT99_MICPC4.390e-2351.43Calcium-dependent cytoplasmic cysteine proteinase,... [more]
C1E5L8_MICCC4.790e-2353.47Calcium-dependent cytoplasmic cysteine proteinase,... [more]
F0YAK9_AURAN8.770e-2348.45Calpain catalytic domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8839contigEcto-sp13_S_contig8839:1296..2228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score192.6
Seed ortholog evalue9.2e-47
Seed eggNOG ortholog2880.D8LB20
Model size315
KEGG koko:K08582
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Ec32 ortholog descriptioncalcium-dependent cytoplasmic cysteine proteinase, papain-like protein
Ec32 orthologEc-27_005560.1
Cds size309
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.9166799-CDS-Ecto-sp13_S_contig8839:1295..14481681464155.9166799-CDS-Ecto-sp13_S_contig8839:1295..1448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8839 1296..1448 -
1681464155.9306188-CDS-Ecto-sp13_S_contig8839:2066..22221681464155.9306188-CDS-Ecto-sp13_S_contig8839:2066..2222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8839 2067..2222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.9410112-UTR-Ecto-sp13_S_contig8839:2222..22281681464155.9410112-UTR-Ecto-sp13_S_contig8839:2222..2228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8839 2223..2228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8839.20326.1prot_Ecto-sp13_S_contig8839.20326.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8839 1296..2222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8839.20326.1

>prot_Ecto-sp13_S_contig8839.20326.1 ID=prot_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MQGVKAEDVKQGALGDCWLVAAMATLAGTMPGAIKKLFGNSERSYRQARI
GNYKVRLFDITQDRWRTITVDDNIPTRHGNPIFAKPNGKELWVVLLEKAV
AK*
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mRNA from alignment at Ecto-sp13_S_contig8839:1296..2228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8839.20326.1 ID=mRNA_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8839:1296..2228- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGATGCAGGGCGTTAAGGCCGAAGACGTCAAGCAGGGGGCACTGGG CGACTGCTGGCTGGTTGCTGCGATGGCGACCCTGGCCGGCACTATGCCTG GCGCCATCAAGAAGCTCTTTGGCAACAGCGAACGCTCCTACAGGCAAGCA AGAATCGGGAATGTTCGTGTGTTTGCGTGGAGGGGTGGGTGACACCGCGT GCCTATTCAGCTATGAGGTTTGTGGTTGTTCGCCTCTATGCCTGTGAGGC CTTGTGGCAAGGAGGTGACACTGCTATTGTGACTCCATGCATGCTTGGCA GCGAGGTCGTCACTACCGGTGAAGGTTGTGGTGCTGCCTGTAATGGTGGT TAAGAGCTATCGCCACGACGCCGCATACCAAACGGTCCATGTGTTGCGTA GCCGCCGGAGGTGGTACTGTCCGACGGCACCAGGCTAGACGGCTCAAAGC TTTCGGGCTAAAGCGTGTTGGAGAAAAGGTTACAGTCATGTTGGTGTCAC GACCGCCCTCCCGTGTTGAATCTTGTTTTTTCTTTTTAGGGTTCAGATGG ACGCCTCCGAGCGCTTGACTTCGTGTTGCATACAGGCTCACTTCCGGTTG GCATGCGCAAAGTGAGAAAAATCAGTCGTTGGGTTTTGCGGGTGCGTCCT AGGTGCCCTTCCGTCAGTTTGTACGAGTTTGAGAAAATCGAAACGACAAT TTGTGATCAACGCAACGCCTGTTTCGTCTTTGTGTGTGTGTGTGTTTGAT CTTGACGTTCTGTTGTCGTTAAGGGGCAAGTACAAGGTACGCCTGTTCGA CATCACGCAGGACAGGTGGAGGACCATCACGGTGGACGACAACATCCCGA CCAGGCACGGAAATCCCATATTCGCAAAGCCCAACGGGAAGGAGCTGTGG GTCGTACTTCTCGAGAAGGCCGTCGCAAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8839:1296..2228-

>mRNA_Ecto-sp13_S_contig8839.20326.1 ID=mRNA_Ecto-sp13_S_contig8839.20326.1|Name=mRNA_Ecto-sp13_S_contig8839.20326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8839:1296..2228- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGGCGTTAAGGCCGAAGACGTCAAGCAGGGGGCACTGGGCGACTG
CTGGCTGGTTGCTGCGATGGCGACCCTGGCCGGCACTATGCCTGGCGCCA
TCAAGAAGCTCTTTGGCAACAGCGAACGCTCCTACAGGCAAGCAAGAATC
GGGAATTACAAGGTACGCCTGTTCGACATCACGCAGGACAGGTGGAGGAC
CATCACGGTGGACGACAACATCCCGACCAGGCACGGAAATCCCATATTCG
CAAAGCCCAACGGGAAGGAGCTGTGGGTCGTACTTCTCGAGAAGGCCGTC
GCAAAGTAA
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