mRNA_Ecto-sp13_S_contig88341.20322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88341.20322.1
Unique NamemRNA_Ecto-sp13_S_contig88341.20322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A6H5L1F6_9PHAE (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.760e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV
Sbjct:  150 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 207          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: D7G8R2_ECTSI (Flavin_Reduct domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R2_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.300e-32
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVVSIMSDWFVEAANHTCGS PPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV
Sbjct:  108 EFVVSIMSDWFVEAANHTCGSLPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 165          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A7S0DUQ4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DUQ4_9CRYP)

HSP 1 Score: 97.1 bits (240), Expect = 4.390e-24
Identity = 39/59 (66.10%), Postives = 53/59 (89.83%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVF 186
            EFVV+IMS+W+ E+ANHTCG+FPPEV+EMDVAGLTP+ S +++PPR+ ESA+N EC++ 
Sbjct:   33 EFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSEMISPPRVAESAINFECRLI 91          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: L1IE62_GUITC (Flavin_Reduct domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IE62_GUITC)

HSP 1 Score: 97.4 bits (241), Expect = 2.700e-23
Identity = 40/59 (67.80%), Postives = 53/59 (89.83%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKVF 186
            EFVV+IMS+W+ E+ANHTCG+FPPEV+EMDVAGLTP+ S I++PPR+ ESA+N EC++ 
Sbjct:  130 EFVVNIMSEWYAESANHTCGNFPPEVNEMDVAGLTPLPSKIISPPRVAESALNFECRLI 188          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A150H2H2_GONPE (Flavin_Reduct domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H2H2_GONPE)

HSP 1 Score: 94.0 bits (232), Expect = 3.010e-22
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVV+I+S+WF EAANHTCG FPP VDEM +AGLTP+ ST V PPR+ ESAV+MEC+V
Sbjct:   70 EFVVNIISEWFAEAANHTCGDFPPGVDEMALAGLTPLPSTKVKPPRVAESAVHMECRV 127          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A7S1HEZ1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ1_HEMAN)

HSP 1 Score: 92.8 bits (229), Expect = 2.010e-21
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVV+IMSDWF+EAANHTCG F PE +EMD+AGLTP+ S +V PPR+ ESA +MEC++
Sbjct:  143 EFVVNIMSDWFIEAANHTCGDFVPEDNEMDLAGLTPLPSVVVKPPRVGESAFHMECRL 200          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A7S0W0N2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0N2_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 5.030e-21
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVV+IMSDWFVEAANHTCG F PE  EMD+AGL P+ S +V PPR+ ESA +MEC++
Sbjct:  137 EFVVNIMSDWFVEAANHTCGDFAPEDSEMDIAGLHPLPSAVVKPPRVAESAFHMECRL 194          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A835T8W2_CHLIN (Flavin_Reduct domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T8W2_CHLIN)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-20
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVV+IMS+WFVEAANHTCG FP  VDEM +AGLTP+ ST V PPR+ ESAV+MEC++
Sbjct:  183 EFVVNIMSEWFVEAANHTCGDFPRGVDEMALAGLTPLASTKVRPPRVAESAVHMECRL 240          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A7S3QX28_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QX28_DUNTE)

HSP 1 Score: 91.3 bits (225), Expect = 1.140e-20
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            +FVV+IMSDW+VEAANHTCG + PEVDEM + GLTP  S  V PPRIKE+AV MECK+
Sbjct:  152 QFVVNIMSDWYVEAANHTCGDYDPEVDEMSLTGLTPEPSQRVTPPRIKEAAVQMECKL 209          
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Match: A0A2K3DJM3_CHLRE (Flavin_Reduct domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DJM3_CHLRE)

HSP 1 Score: 91.7 bits (226), Expect = 1.640e-20
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 EFVVSIMSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMECKV 183
            EFVV+IMS+WFVEAANHTCG +P  VDEM +AGLTP+ ST V PPR+ ESAV+MEC++
Sbjct:  183 EFVVNIMSEWFVEAANHTCGDYPRGVDEMKLAGLTPLASTKVRPPRVAESAVHMECRL 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88341.20322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1F6_9PHAE1.760e-32100.00Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
D7G8R2_ECTSI5.300e-3298.28Flavin_Reduct domain-containing protein n=1 Tax=Ec... [more]
A0A7S0DUQ4_9CRYP4.390e-2466.10Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1IE62_GUITC2.700e-2367.80Flavin_Reduct domain-containing protein n=2 Tax=Gu... [more]
A0A150H2H2_GONPE3.010e-2272.41Flavin_Reduct domain-containing protein n=1 Tax=Go... [more]
A0A7S1HEZ1_HEMAN2.010e-2168.97Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0W0N2_9CRYP5.030e-2168.97Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A835T8W2_CHLIN1.020e-2072.41Flavin_Reduct domain-containing protein n=1 Tax=Ch... [more]
A0A7S3QX28_DUNTE1.140e-2070.69Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A2K3DJM3_CHLRE1.640e-2070.69Flavin_Reduct domain-containing protein n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88341contigEcto-sp13_S_contig88341:234..422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score109.4
Seed ortholog evalue5.4e-22
Seed eggNOG ortholog2880.D7G8R2
Model size189
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Flavin reductase like domain
EggNOG OGs2CXSN@1,2RZGA@2759
Cds size162
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.5440476-CDS-Ecto-sp13_S_contig88341:233..3951681464155.5440476-CDS-Ecto-sp13_S_contig88341:233..395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88341 234..395 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464155.5686378-UTR-Ecto-sp13_S_contig88341:395..4221681464155.5686378-UTR-Ecto-sp13_S_contig88341:395..422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig88341 396..422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88341.20322.1prot_Ecto-sp13_S_contig88341.20322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88341 234..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88341.20322.1

>prot_Ecto-sp13_S_contig88341.20322.1 ID=prot_Ecto-sp13_S_contig88341.20322.1|Name=mRNA_Ecto-sp13_S_contig88341.20322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MSDWFVEAANHTCGSFPPEVDEMDVAGLTPIKSTIVAPPRIKESAVNMEC
KVFA
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mRNA from alignment at Ecto-sp13_S_contig88341:234..422-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88341.20322.1 ID=mRNA_Ecto-sp13_S_contig88341.20322.1|Name=mRNA_Ecto-sp13_S_contig88341.20322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88341:234..422- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTGCAGTGAATTCGTCGTGAGTATCATGAGCGATTGGTTTGTGGAAGC TGCGAACCACACGTGCGGCAGTTTTCCCCCCGAGGTCGACGAGATGGACG TGGCTGGCCTGACACCAATCAAGTCGACGATCGTGGCGCCTCCCCGCATC AAGGAGTCCGCTGTGAACATGGAGTGCAAGGTATTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88341:234..422-

>mRNA_Ecto-sp13_S_contig88341.20322.1 ID=mRNA_Ecto-sp13_S_contig88341.20322.1|Name=mRNA_Ecto-sp13_S_contig88341.20322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88341:234..422- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGATTGGTTTGTGGAAGCTGCGAACCACACGTGCGGCAGTTTTCC
CCCCGAGGTCGACGAGATGGACGTGGCTGGCCTGACACCAATCAAGTCGA
CGATCGTGGCGCCTCCCCGCATCAAGGAGTCCGCTGTGAACATGGAGTGC
AAGGTATTCGCG
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