mRNA_Ecto-sp13_S_contig8811.20299.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8811.20299.1
Unique NamemRNA_Ecto-sp13_S_contig8811.20299.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8811.20299.1 vs. uniprot
Match: D7FQ88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ88_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.830e-57
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 RPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDITCLKSKEVFALAETFDQ 261
            RPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVD TCLKSKEVFA AETFDQ
Sbjct:  152 RPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQFPKPTIFNQCLRSCLDVVDTTCLKSKEVFASAETFDQ 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8811.20299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ88_ECTSI2.830e-5797.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8811contigEcto-sp13_S_contig8811:25..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size264
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_007040.1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464154.0030155-CDS-Ecto-sp13_S_contig8811:24..1031681464154.0030155-CDS-Ecto-sp13_S_contig8811:24..103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 25..103 +
1681464154.0120726-CDS-Ecto-sp13_S_contig8811:341..5261681464154.0120726-CDS-Ecto-sp13_S_contig8811:341..526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8811 342..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8811.20299.1prot_Ecto-sp13_S_contig8811.20299.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8811 25..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8811.20299.1

>prot_Ecto-sp13_S_contig8811.20299.1 ID=prot_Ecto-sp13_S_contig8811.20299.1|Name=mRNA_Ecto-sp13_S_contig8811.20299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
RPLAHRSCLAGCRAGVTTAWDTACVGGRHRDCVRESTERCDFHCASYRNQ
FPKPTIFNQCLRSCLDVVDITCLKSKEVFALAETFDQ*
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mRNA from alignment at Ecto-sp13_S_contig8811:25..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8811.20299.1 ID=mRNA_Ecto-sp13_S_contig8811.20299.1|Name=mRNA_Ecto-sp13_S_contig8811.20299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=502bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8811:25..526+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCTCTCGCCCATCGATCGTGTTTGGCTGGGTGCCGGGCGGGAGTCAC
AACTGCATGGGATACGGCATGCGTTGGAGGTGGGTCGCGCCGCCACACAG
GGGCTCATTGTCGATATTTACTTGTGAAGAACCCATTGAGAGGGACCCAA
CTGAACTCTGCAGAACTCGTTCGAATAAGGGGTTATTTAGCCAAAGAAAG
AGGTTATTCAGCTCTAAATCAGAATCACATTTTAGCACAGGCGCCTCTCG
TCGGCAGATTACATGTATTCCAGCACAAAACAGCAATGTTCTCCTTCTCT
CACGACTCGTGGCTCAGGTCGCCACCGCGATTGCGTCAGGGAATCGACGG
AGCGGTGCGACTTCCACTGCGCGAGCTACCGAAACCAGTTCCCCAAGCCA
ACTATTTTCAACCAGTGCCTACGCTCCTGCCTTGACGTTGTGGACATCAC
GTGTCTGAAGTCGAAGGAGGTGTTTGCTTTGGCAGAAACGTTCGACCAGT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8811:25..526+

>mRNA_Ecto-sp13_S_contig8811.20299.1 ID=mRNA_Ecto-sp13_S_contig8811.20299.1|Name=mRNA_Ecto-sp13_S_contig8811.20299.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8811:25..526+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCTCTCGCCCATCGATCGTGTTTGGCTGGGTGCCGGGCGGGAGTCAC
AACTGCATGGGATACGGCATGCGTTGGAGGTCGCCACCGCGATTGCGTCA
GGGAATCGACGGAGCGGTGCGACTTCCACTGCGCGAGCTACCGAAACCAG
TTCCCCAAGCCAACTATTTTCAACCAGTGCCTACGCTCCTGCCTTGACGT
TGTGGACATCACGTGTCTGAAGTCGAAGGAGGTGTTTGCTTTGGCAGAAA
CGTTCGACCAGTGA
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