mRNA_Ecto-sp13_S_contig88098.20296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig88098.20296.1
Unique NamemRNA_Ecto-sp13_S_contig88098.20296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A6H5JZI5_9PHAE (ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZI5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.710e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV
Sbjct:  192 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 241
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A6V2WS15_HETAK (ATP synthase subunit alpha n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WS15_HETAK)

HSP 1 Score: 100 bits (248), Expect = 2.280e-23
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQRELVIGDRQTGKTAI IDTIINQKTKGDDLLYC+
Sbjct:  189 TGLKAVDALIPIGRGQRELVIGDRQTGKTAIAIDTIINQKTKGDDLLYCI 238
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A836CH44_9STRA (ATP synthase subunit alpha n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH44_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.150e-23
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDDLLYC+
Sbjct:  189 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDLLYCI 238
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: F0YIV3_AURAN (ATP synthase subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIV3_AURAN)

HSP 1 Score: 94.7 bits (234), Expect = 1.700e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDD L C+
Sbjct:  140 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDALMCI 189
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A8J2SM38_9STRA (ATP synthase subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM38_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.840e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDD L C+
Sbjct:  176 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDALMCI 225
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A7S2BTT7_9STRA (ATP synthase subunit alpha n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BTT7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.870e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLK+VDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTKGDD L C+
Sbjct:  203 TGLKSVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKGDDALMCI 252
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A7S2W4M6_9STRA (ATP synthase subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4M6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.520e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQ+TKGDD L C+
Sbjct:  184 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQRTKGDDALKCI 233
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A7S0JM74_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0JM74_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.670e-20
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDL 138
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTK D L
Sbjct:   48 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKADPL 93
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BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A7R9W272_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W272_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.700e-19
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDL 138
            TGLKAVDALIPIGRGQREL+IGDRQTGKTAI IDTIINQKTK D L
Sbjct:   56 TGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKADPL 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Match: A0A6U4D8B6_9STRA (ATP synthase subunit alpha n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D8B6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.810e-19
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV 150
            TGLKAVDALIPIGRGQRELVIGDRQTGKTAI IDTIINQKTK DD L+C+
Sbjct:  182 TGLKAVDALIPIGRGQRELVIGDRQTGKTAIAIDTIINQKTK-DDPLFCI 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88098.20296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI5_9PHAE9.710e-25100.00ATP synthase subunit alpha n=2 Tax=Ectocarpus TaxI... [more]
A0A6V2WS15_HETAK2.280e-2396.00ATP synthase subunit alpha n=1 Tax=Heterosigma aka... [more]
A0A836CH44_9STRA3.150e-2394.00ATP synthase subunit alpha n=2 Tax=Tribonema minus... [more]
F0YIV3_AURAN1.700e-2190.00ATP synthase subunit alpha n=1 Tax=Aureococcus ano... [more]
A0A8J2SM38_9STRA1.840e-2190.00ATP synthase subunit alpha n=1 Tax=Pelagomonas cal... [more]
A0A7S2BTT7_9STRA4.870e-2188.00ATP synthase subunit alpha n=1 Tax=Dictyocha specu... [more]
A0A7S2W4M6_9STRA6.520e-2188.00ATP synthase subunit alpha n=1 Tax=Rhizochromulina... [more]
A0A7S0JM74_9EUKA1.670e-2091.30Hypothetical protein (Fragment) n=1 Tax=Minchinia ... [more]
A0A7R9W272_9STRA2.700e-1991.30Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A6U4D8B6_9STRA2.810e-1990.00ATP synthase subunit alpha n=1 Tax=Phaeomonas parv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig88098contigEcto-sp13_S_contig88098:347..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score104.8
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D8LJM3
Preferred nameatp1
Model size153
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Exons1
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0056@1,KOG1353@2759
Cds size153
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.8549917-CDS-Ecto-sp13_S_contig88098:346..4991681464153.8549917-CDS-Ecto-sp13_S_contig88098:346..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig88098 347..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig88098.20296.1prot_Ecto-sp13_S_contig88098.20296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig88098 347..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig88098.20296.1

>prot_Ecto-sp13_S_contig88098.20296.1 ID=prot_Ecto-sp13_S_contig88098.20296.1|Name=mRNA_Ecto-sp13_S_contig88098.20296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
TGLKAVDALIPIGRGQRELVIGDRQTGKTAICIDTIINQKTKGDDLLYCV
*
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mRNA from alignment at Ecto-sp13_S_contig88098:347..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig88098.20296.1 ID=mRNA_Ecto-sp13_S_contig88098.20296.1|Name=mRNA_Ecto-sp13_S_contig88098.20296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88098:347..499- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGGCCTGAAGGCCGTGGACGCCCTGATCCCGATCGGGCGCGGGCAGCG
TGAGCTGGTAATCGGTGACCGACAGACGGGTAAGACGGCTATCTGCATCG
ACACGATCATCAACCAGAAGACCAAGGGCGACGACTTGCTCTACTGCGTG
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88098:347..499-

>mRNA_Ecto-sp13_S_contig88098.20296.1 ID=mRNA_Ecto-sp13_S_contig88098.20296.1|Name=mRNA_Ecto-sp13_S_contig88098.20296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88098:347..499- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGGCCTGAAGGCCGTGGACGCCCTGATCCCGATCGGGCGCGGGCAGCG
TGAGCTGGTAATCGGTGACCGACAGACGGGTAAGACGGCTATCTGCATCG
ACACGATCATCAACCAGAAGACCAAGGGCGACGACTTGCTCTACTGCGTG
TGA
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