mRNA_Ecto-sp13_S_contig8803.20289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8803.20289.1
Unique NamemRNA_Ecto-sp13_S_contig8803.20289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8803.20289.1 vs. uniprot
Match: D7FM28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM28_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.310e-60
Identity = 281/350 (80.29%), Postives = 290/350 (82.86%), Query Frame = 1 
Query:    1 APLLSQGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTGGGCEEGEKSKRKPQGTAVPSNGTASDGETPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTKKKSKSSAGRMGDEGTKSEASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKATEAVVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLCGNGVGDDEGGAQEGAVPKAKLGKKKKPKVGEAQAVEEEAAKSPGK 1050
            AP  + GGLGSAGLV+GGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVTG GCEEGEKS RKP GTAVPSNGTASDGETP                          XXXX                 PTKK   SSAG MGDEGTK+E S+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKAT+AVVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNG+CGNGVGDD+GGAQEGAVPKAK GKKKKPKVG+A+AVEEEAAKSPGK
Sbjct:   17 APKGNHGGLGSAGLVKGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSE-GVTGEGCEEGEKSIRKPNGTAVPSNGTASDGETPRKKEKTKRKRAETPVAAVDGEGAKKTXXXXKMEEEAGIDQAGDASDVPTKKXXXSSAGGMGDEGTKNETSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKATDAVVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVCGNGVGDDKGGAQEGAVPKAKSGKKKKPKVGKAEAVEEEAAKSPGK 365
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BLAST of mRNA_Ecto-sp13_S_contig8803.20289.1 vs. uniprot
Match: A0A6H5L1A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A4_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.030e-45
Identity = 246/374 (65.78%), Postives = 257/374 (68.72%), Query Frame = 1 
Query:    1 APLLSQGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GVTGGGCEEGEKSKRKPQGTAVPSNGTASDGETPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTKKKSKS-------------------SAGRMGDEGTKSEASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKATEAVVEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGLCGNGVGDDEGGAQEGAVPKAKLGKKKKPKVGEAQAVEEEAAKSPGKS 1053
            AP  + GGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GVTGGGCEEGEKSKRKPQGTA PSNGTASDGETP                      XXXXXXXXXX               PTK                          G++G+    + ++S  XXXXXXXXX                           GGKAT+AVVEK XXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXNG+CGNGVGDDEG AQEGAVPKAK GK KKPK G+A+AVEEEAAKSPGKS
Sbjct:   17 APKGNHGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSSQGVTGGGCEEGEKSKRKPQGTAAPSNGTASDGETP--RKEKTKRKRAGTSVAAMDGEXXXXXXXXXXMEEAGLDRAGDVSDVPTKXXXXXXXXXXXXXXXXXXXXXXXXERGKVGESAAANGSTSSEXXXXXXXXXKKKNIN---------------------GGKATDAVVEKXXXXXXXXXXXXXXXXXXXXXXXXRGKAREXXXXXXXXXXXNGVCGNGVGDDEGVAQEGAVPKAKSGKMKKPKFGKAEAVEEEAAKSPGKS 367
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BLAST of mRNA_Ecto-sp13_S_contig8803.20289.1 vs. uniprot
Match: A0A835ZCI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.920e-6
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   22 GLGSAGLVRG-GFKQRDNGLPKNGLYSYFVKPGHFKTTFADSD 147
            GLGS     G G   RDNGLPKNGLYS+FV+ GHFK  FADSD
Sbjct:   23 GLGSRSQTTGIGHAHRDNGLPKNGLYSFFVREGHFKKKFADSD 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8803.20289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM28_ECTSI2.310e-6080.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1A4_9PHAE3.030e-4565.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCI6_9STRA8.920e-667.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8803contigEcto-sp13_S_contig8803:3893..6262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score214.2
Seed ortholog evalue1.1e-52
Seed eggNOG ortholog2880.D7FM28
Model size1197
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E11N@1,2S8EB@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010440.1
Cds size1197
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464153.4109452-CDS-Ecto-sp13_S_contig8803:3892..50011681464153.4109452-CDS-Ecto-sp13_S_contig8803:3892..5001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8803 3893..5001 -
1681464153.4215353-CDS-Ecto-sp13_S_contig8803:6174..62621681464153.4215353-CDS-Ecto-sp13_S_contig8803:6174..6262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8803 6175..6262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8803.20289.1prot_Ecto-sp13_S_contig8803.20289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8803 3893..6262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8803.20289.1

>prot_Ecto-sp13_S_contig8803.20289.1 ID=prot_Ecto-sp13_S_contig8803.20289.1|Name=mRNA_Ecto-sp13_S_contig8803.20289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=399bp
APLLSQGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADSDD
DDDDDDDEKSGGSGDEKAKRKAAKKLKKREKKDAKKTKKRVKKEKAAAAA
AESSSEGVTGGGCEEGEKSKRKPQGTAVPSNGTASDGETPCKKEKTKRKR
AETSVAAVDGEGAKKTKKAKKMDEEAGLDRAGDASDVPTKKKSKSSAGRM
GDEGTKSEASSEKKKKKRGKVDEFAAANGSTSSEPSNTGGDTEKKKKKNG
GKATEAVVEKAANGTAQPSTSGGGGGTEKKKKKKGGKAREPAAEEAAIRT
ANGLCGNGVGDDEGGAQEGAVPKAKLGKKKKPKVGEAQAVEEEAAKSPGK
SNKKKKKSRGREDGDSEAAAAEGSGESKVKKAKKSKTKKKKAAGAAAA*
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mRNA from alignment at Ecto-sp13_S_contig8803:3893..6262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8803.20289.1 ID=mRNA_Ecto-sp13_S_contig8803.20289.1|Name=mRNA_Ecto-sp13_S_contig8803.20289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8803:3893..6262- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCCCTGCTCTCTCAGGGTGGCCTCGGGAGCGCGGGACTGGTGAGGGG
TGGATTCAAGCAGAGGGACAACGGCCTTCCCAAGAATGGTGAACCAAGTC
GGAACAGTGGTGATGCTTGTTAGCCCTGTGAGCGCCTTGTTGTGGGTTCG
AATGCTTTGAAATGGTTGATACCCTTGTAGTAGAGCGGGGATATTGGGGC
GGCGTCGCTTCGTATTGCTTTGCCTTGTGGTGTGATGGATATAATGAGGG
GTTGGCAACGGCAACGATGAACTGTGTGCCTGTGATTTGTGAAGAGCAAT
TGGGACTGGAGGAATGGCTTCCAGACTCCGGCGCAACAAATCACACCACC
GGTTATGCATCATACATGCACCACGTACGACATCAATTTGTCACCCCCCT
GGTAGTGGGAGAGTCCAGATTGAACATGGTAGAACGATTCGGGTGTTTGG
GATGAGGAGTTTGCCGTATCAACTCTCACAACAGGGACACCTACCCAGTA
ATCTGCTCTACCTCATTCCATGGGAACATTCCTTACCATCCACTTGCACT
GCTGAAAGTATGTCAATCACATTTCGCCTTTGGTCGGTTGATGCTGTAAG
TAGCTCGAGAGAGTTATTGTCGAACCTATCGTGTTGAACGCAAACTAATA
CTTTCTTGCGAAGTTGGTATCTCTTTGAAAGGTTTCGCGTTCAAGTCCCA
GTGTATCGGAGATTGTTTCTCACTCATCTAACAACGAGAGGTGGAAGGCA
TCTTTTCATACGTGGATTCTGGGCGGGAAAGAAACCGTTTGCGCCAAGTT
CCGCAGATGGGGCGCGTGGGGGTGTGGGGTAGGGGATGCAGTGCTTTCGT
GCGACCCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTTAGTCGTGGGGTTCGTGACGGCTGAC
TAGTCTAATGGTTTGATTTAGTCTATTAAAAATCACAACCGCAAGGTAAC
GTCCCACCCGCGCTGGACCTTCGCTTGGCGTTTCGTGTCGTACACGTTCC
CCCCGACCTAGGCCTCTACTCGTACTTCGTGAAGCCCGGGCACTTCAAGA
CCACCTTCGCTGACAGCGATGATGACGATGACGACGACGACGACGAAAAG
AGCGGCGGCAGCGGGGACGAGAAAGCGAAGCGAAAGGCCGCCAAGAAGCT
AAAGAAGCGGGAGAAGAAGGACGCAAAAAAGACCAAGAAAAGGGTCAAGA
AGGAGAAGGCCGCGGCGGCAGCAGCGGAGTCGTCGAGCGAAGGGGTGACG
GGTGGAGGGTGCGAAGAGGGAGAGAAGAGCAAACGAAAACCCCAGGGGAC
GGCTGTGCCCTCCAATGGCACCGCTTCGGACGGGGAAACGCCTTGCAAGA
AGGAGAAAACCAAGCGAAAACGAGCAGAAACTTCCGTCGCTGCGGTTGAT
GGCGAGGGTGCCAAGAAAACGAAGAAGGCGAAGAAAATGGACGAGGAAGC
GGGTCTCGATCGAGCAGGGGACGCTAGCGACGTCCCCACGAAGAAGAAGA
GCAAAAGCTCTGCCGGGAGAATGGGGGACGAGGGGACCAAGAGCGAGGCC
TCAAGCGAGAAAAAGAAAAAGAAGCGAGGGAAAGTGGACGAGTTCGCCGC
TGCGAACGGGTCGACTTCGAGCGAACCGAGCAACACCGGCGGCGATACGG
AGAAGAAGAAAAAGAAGAACGGAGGGAAAGCGACAGAGGCAGTGGTAGAG
AAGGCGGCAAACGGCACAGCCCAACCGAGCACCAGCGGCGGCGGCGGCGG
GACGGAGAAGAAGAAAAAGAAGAAAGGAGGGAAAGCGAGAGAACCAGCAG
CGGAGGAGGCGGCAATCCGCACCGCTAATGGACTGTGCGGCAACGGGGTC
GGGGACGACGAGGGAGGGGCGCAAGAGGGAGCTGTACCAAAAGCGAAGTT
GGGGAAAAAGAAGAAACCCAAGGTTGGCGAGGCTCAGGCTGTAGAGGAGG
AGGCGGCGAAATCGCCGGGAAAGAGCAATAAGAAGAAAAAGAAGTCGAGA
GGAAGGGAGGACGGAGACAGCGAAGCAGCTGCTGCAGAGGGGAGCGGCGA
GAGCAAGGTCAAGAAGGCCAAGAAATCGAAGACGAAGAAGAAGAAAGCCG
CTGGCGCTGCTGCAGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8803:3893..6262-

>mRNA_Ecto-sp13_S_contig8803.20289.1 ID=mRNA_Ecto-sp13_S_contig8803.20289.1|Name=mRNA_Ecto-sp13_S_contig8803.20289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8803:3893..6262- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCCCTGCTCTCTCAGGGTGGCCTCGGGAGCGCGGGACTGGTGAGGGG
TGGATTCAAGCAGAGGGACAACGGCCTTCCCAAGAATGGCCTCTACTCGT
ACTTCGTGAAGCCCGGGCACTTCAAGACCACCTTCGCTGACAGCGATGAT
GACGATGACGACGACGACGACGAAAAGAGCGGCGGCAGCGGGGACGAGAA
AGCGAAGCGAAAGGCCGCCAAGAAGCTAAAGAAGCGGGAGAAGAAGGACG
CAAAAAAGACCAAGAAAAGGGTCAAGAAGGAGAAGGCCGCGGCGGCAGCA
GCGGAGTCGTCGAGCGAAGGGGTGACGGGTGGAGGGTGCGAAGAGGGAGA
GAAGAGCAAACGAAAACCCCAGGGGACGGCTGTGCCCTCCAATGGCACCG
CTTCGGACGGGGAAACGCCTTGCAAGAAGGAGAAAACCAAGCGAAAACGA
GCAGAAACTTCCGTCGCTGCGGTTGATGGCGAGGGTGCCAAGAAAACGAA
GAAGGCGAAGAAAATGGACGAGGAAGCGGGTCTCGATCGAGCAGGGGACG
CTAGCGACGTCCCCACGAAGAAGAAGAGCAAAAGCTCTGCCGGGAGAATG
GGGGACGAGGGGACCAAGAGCGAGGCCTCAAGCGAGAAAAAGAAAAAGAA
GCGAGGGAAAGTGGACGAGTTCGCCGCTGCGAACGGGTCGACTTCGAGCG
AACCGAGCAACACCGGCGGCGATACGGAGAAGAAGAAAAAGAAGAACGGA
GGGAAAGCGACAGAGGCAGTGGTAGAGAAGGCGGCAAACGGCACAGCCCA
ACCGAGCACCAGCGGCGGCGGCGGCGGGACGGAGAAGAAGAAAAAGAAGA
AAGGAGGGAAAGCGAGAGAACCAGCAGCGGAGGAGGCGGCAATCCGCACC
GCTAATGGACTGTGCGGCAACGGGGTCGGGGACGACGAGGGAGGGGCGCA
AGAGGGAGCTGTACCAAAAGCGAAGTTGGGGAAAAAGAAGAAACCCAAGG
TTGGCGAGGCTCAGGCTGTAGAGGAGGAGGCGGCGAAATCGCCGGGAAAG
AGCAATAAGAAGAAAAAGAAGTCGAGAGGAAGGGAGGACGGAGACAGCGA
AGCAGCTGCTGCAGAGGGGAGCGGCGAGAGCAAGGTCAAGAAGGCCAAGA
AATCGAAGACGAAGAAGAAGAAAGCCGCTGGCGCTGCTGCAGCATAG
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