mRNA_Ecto-sp13_S_contig880.20284.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE) HSP 1 Score: 459 bits (1181), Expect = 1.930e-160 Identity = 232/245 (94.69%), Postives = 234/245 (95.51%), Query Frame = 2
Query: 8 RGIGKPEDAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEDCLRMMEPSLVSLKATEALACLTAAGNGSGGDSGNTAKEGVPTAS----AAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ 730
RGIG+PEDAVFPRELGRLP QLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALE+CLRMMEPSLVSLKA EALACLTAAGNGSGGDSGNTAKE VPTAS AAAA L FPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACR FAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ
Sbjct: 159 RGIGRPEDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAAGNGSGGDSGNTAKERVPTASTSAAAAAAGLSFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRSFFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ 403
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI) HSP 1 Score: 372 bits (956), Expect = 7.040e-122 Identity = 187/191 (97.91%), Postives = 189/191 (98.95%), Query Frame = 2
Query: 158 GALEDCLRMMEPSLVSLKATEALACLTAAGNGSGGDSGNTAKEGVPTASAAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ 730
GALE+CLRMMEPSLVS KATEALACLTAAGNGSGGDSGNTAKEGVPTASA+AAA PFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ
Sbjct: 554 GALEECLRMMEPSLVSFKATEALACLTAAGNGSGGDSGNTAKEGVPTASASAAAPPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCDPNFQ 744
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A7S2R010_9STRA (Protein transport protein SEC23 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R010_9STRA) HSP 1 Score: 119 bits (299), Expect = 6.140e-29 Identity = 83/239 (34.73%), Postives = 115/239 (48.12%), Query Frame = 2
Query: 29 DAVFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEDCLRMMEPSL--VSLKATEALACLTAAGNGSGGDSGNTAKEGVPTASAAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRG----VFAGEAGSRFPYAPV--VFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTD---DESYREFFWDV 712
D FP EL QL+HLRRG +LG LQ+ DD + R+LF+R LED L M+ P L L E+ L VP TLA+ + V+ D +D +FVWSG GPE++ +RE C+ + + G + P+ LK+G S SR LT+RL P+H DP + QL FP+LA + +++ LR K D D S+R +FW V
Sbjct: 59 DFAFPPELADALHQLYHLRRGSMLGHGLQSMDDRVMSRNLFIRLPLEDTLSMIAPVLWKCQLNNDESPPLLL-------------------------------LDPVPCITLALWDNCVIAADHYDCLFVWSGRGTLGPEYDGLREKCKKHLLELVSNSNGDNHRFTPIKIYMLKEGDSMSRRLTTRLAPAHADPPQHQLASFPDLAHLTPTQLQTLRDKFRFYDAKADASFRRWFWSV 266
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A1E7F507_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F507_9STRA) HSP 1 Score: 124 bits (312), Expect = 7.660e-29 Identity = 78/233 (33.48%), Postives = 119/233 (51.07%), Query Frame = 2
Query: 29 DAVFPRELGRLPRQLFHLRRGPLLGP-LLQNSDDPLCLRHLFLRGALEDCLRMMEPSLVSLKATEALACLTAAGNGSGGDSGNTAKEGVPTASAAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTD---DESYREFFWDVC 715
+ FP +L +L+HLRRGPL+ P +++ DD +R LFLR LEDCL+MM P+++S T + NG N P ETL++ D ++ D HD +F+WSG+ ++ +R+ + + +RFP + L+DG S SR T+RL PSH DP++ Q+ FP L+ + A + +LR+K D DES+R +FW V
Sbjct: 742 ELAFPPQLKETLNRLYHLRRGPLISPGPMRSMDDRAEIRGLFLRFPLEDCLKMMRPTVLS----------TGSMNGISSAWDNMVS-------------------FPAETLSLWDDSIVAADFHDTLFIWSGANCTATRYDGIRDKLKTHLLEVSMNRFPQPELHVLEDGDSMSRRFTARLAPSHADPIDNQIVHFPALSTLDPAALVKLRSKFKFYDSKSDESFRTWFWSVA 945
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A2P6N5N0_9EUKA (Protein transport protein SEC23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N0_9EUKA) HSP 1 Score: 122 bits (307), Expect = 3.200e-28 Identity = 82/239 (34.31%), Postives = 118/239 (49.37%), Query Frame = 2
Query: 8 RGIGKPEDA---VFPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEDCLRMMEPSLVSLKATEALACLTAAGNGSGGDSGNTAKEGVPTASAAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCG----PEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFF 703
RG GK V P L LP++LF L+RGPLLGP+LQ+ DD +R L ++ L+D LRM++P L + DS ++ P +P E LAM +D++L+LD H VF W G V + E + + C + R+P+ K+GTS +R++ RLIPSHKD EEQL FP + + E + +L +K TDD SY ++F
Sbjct: 521 RGCGKVSRRGGYVLPTHLSLLPKRLFMLQRGPLLGPILQHMDDIDYMRCLLIQANLQDSLRMIDPPLFMV------------------DSSLRGEQ------------PLELYPLPTEDLAMQSDKILLLDHHTEVFRWLGGMVGRIHQTADLEGILKRCDEYVESISRHRYPHPSSHSFKEGTSMARWIQCRLIPSHKDTTEEQLENFPQMDELTEEDRRRLLSKFHRTDDLSYLQWF 729
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.020e-16 Identity = 56/127 (44.09%), Postives = 73/127 (57.48%), Query Frame = 2
Query: 341 VPV--ETLAMLADRVLVLDTHDRVFVWSGSAVCGP-EFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDV 712
VPV ETLAML RVLV+DTHD ++VWSG+ G +R+A A A +RFP A V L++G SW R+L RL PSH D E RG + A + +L +LP TDD + R+F + V
Sbjct: 803 VPVAPETLAMLPHRVLVMDTHDALYVWSGARAAGDARARRLRDAAIDAAAAAAAARFPCAEVTVLREGQSWCRHLLCRLAPSHMDA--EVGRGRSDAA------IAELCVRLPHTDDLTLRQFTYSV 921
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: D8M3U1_BLAHO (Protein transport protein SEC23 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M3U1_BLAHO) HSP 1 Score: 82.8 bits (203), Expect = 1.180e-15 Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query: 341 VPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREF 700
+P ETLA+++D ++VLDT +F+W G+ + + + + C + RFP + + +++G+S +R++ S LIPSHKDP+E P LA +P + Q K TDD S+RE+
Sbjct: 62 LPPETLALMSDSIVVLDTEREIFIWIGTERSEVDADPLYDHCVSLALSMNQERFPPSIIRVVREGSSSARFVLSNLIPSHKDPIETSFLSLPFLATLPPQYLRQHCNKFLRTDDMSFREY 181
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A7S0EE52_9CRYP (Protein transport protein SEC23 (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE52_9CRYP) HSP 1 Score: 86.3 bits (212), Expect = 1.310e-15 Identity = 48/120 (40.00%), Postives = 65/120 (54.17%), Query Frame = 2
Query: 332 FSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESY 691
F VPVE ++L DR+L+LD H +VFVWSG+ V G E++ VR+ RFP V+ K+G S R+L RL PSH+D + G + EA L+ K P D+ESY
Sbjct: 645 FQEVPVEDTSLLPDRILLLDHHTQVFVWSGTQVAGAEYDLVRQTLLSSIKAWTAGRFPCPEVMEFKEGNSMCRWLECRLNPSHRDMASRGVMG-----SLTEAVKGLLQKKFVPMDNESY 759
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A6A7GB13_9CRUS (Protein transport protein SEC23 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GB13_9CRUS) HSP 1 Score: 85.9 bits (211), Expect = 1.790e-15 Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2
Query: 341 VPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDV 712
+P+ LA+ ++R+L LD H VF+WSG V G E+++ R ACR + RFP + V K+ +S R+L RLIP+H D + +Q FP L + +L K T++ SYR++ + +
Sbjct: 657 LPLSNLALQSNRILCLDHHSHVFIWSGKEVSGSEYDSYRNACRERSLVTSTRRFPQSRVFQFKENSSDERWLRCRLIPAHNDSLAQQNEDFPQLDEMEPYLRSKLLEKFMRTNEPSYRQYLFQI 780
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Match: A0A843TJB3_COLES (Protein transport protein SEC23 n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TJB3_COLES) HSP 1 Score: 82.8 bits (203), Expect = 2.080e-14 Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 2
Query: 38 FPRELGRLPRQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEDCLRMMEPSLVSLKATEALACLTAAGNGSGGDSGNTAKEGVPTASAAAAALPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFE--AVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREF 700
FP+EL +P LFHLRRGPLLG ++ + D+ LR+LFL + + LRM+ P + + G T +E LP + A++ D + + G+ + E + A ACR + RFP ++ K+G+S +RY SRLIP+H+DP EQ FP L + + +L++ DD S+ E+
Sbjct: 681 FPKELSSVPENLFHLRRGPLLGSIIGHEDERSILRNLFLHASFDLSLRMLAPRCLMHR------------------EGGTFEE-----------LPA-YDLAMQSNAAVVLDHGTDVFIWLVTELALGAELAAQEGQSAAALAACRTLAEELTEQRFPAPRILAFKEGSSQARYFVSRLIPAHRDPPYEQEARFPQLLSLTPEQRTKLKSSFVHFDDLSFCEW 873 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig880.20284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig880.20284.1 >prot_Ecto-sp13_S_contig880.20284.1 ID=prot_Ecto-sp13_S_contig880.20284.1|Name=mRNA_Ecto-sp13_S_contig880.20284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp GRAGDRQTGRRGLPAGAGAAASAAVSSEEGPAAGPPPAELGRSAVPAAPVback to top mRNA from alignment at Ecto-sp13_S_contig880:14927..17313- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig880.20284.1 ID=mRNA_Ecto-sp13_S_contig880.20284.1|Name=mRNA_Ecto-sp13_S_contig880.20284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig880:14927..17313- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig880:14927..17313- >mRNA_Ecto-sp13_S_contig880.20284.1 ID=mRNA_Ecto-sp13_S_contig880.20284.1|Name=mRNA_Ecto-sp13_S_contig880.20284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig880:14927..17313- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |