mRNA_Ecto-sp13_S_contig88.20281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE) HSP 1 Score: 683 bits (1762), Expect = 2.220e-243 Identity = 355/409 (86.80%), Postives = 375/409 (91.69%), Query Frame = 3
Query: 303 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWTGDVVLKARDKSQLTNQQGRGGGDAAMRAVEQYGHEVRRDLASMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLRNGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEEVVWTPPPSGNGPAPA-------SPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWH 1508
MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEW+GDVVLKARDKS LT QQGRG G AAMRA EQ+GHEVRRDL S+RASVEQCRAENM FF+ FMSSIEA+QHG+DVLRNGPLEEA MSLKEFEASGDD+DELKEASRKARTALVTGSTLEIKFTAATITISAGYVHK+KAGSPSEAKQATVKGSLANVV+HFATIWADP R+GTVEERKVLSFLLNVVSCVCVLPPE+V VLPELD RL AFGALCASEP+LRRLYP VGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGV+EIL TS+RDLVPTQATACKG+VEEVV TP PSG GPAPA P+GSTSTD+ ALMALY QTNGPPEK+GRLW AA+GGWRNRRGWG P GDW+
Sbjct: 1 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWSGDVVLKARDKSLLTKQQGRGDGSAAMRASEQHGHEVRRDLESVRASVEQCRAENMLFFTTFMSSIEATQHGVDVLRNGPLEEAHMSLKEFEASGDDVDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKMKAGSPSEAKQATVKGSLANVVKHFATIWADPSRSGTVEERKVLSFLLNVVSCVCVLPPENVPVLPELDSRLLPAFGALCASEPELRRLYPDVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVIEILSTSERDLVPTQATACKGVVEEVVRTPLPSGKGPAPAVVAPIPAPPVGSTSTDMGALMALYFQTNGPPEKKGRLWAAAKGGWRNRRGWGTFAPLGDWY 409
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI) HSP 1 Score: 339 bits (869), Expect = 6.740e-108 Identity = 184/364 (50.55%), Postives = 242/364 (66.48%), Query Frame = 3
Query: 534 EVRRDLASMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLRNGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEEVVWTPPPSGNGPAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRGPIPPALGGLAALRLLRL 1625
EV+RDLAS+R SVE CRAENM+FF++F + +EA+Q G++++R+ PLEEA+MSLK FE S ++ L+ A KA TALV G TL++K +AA I +SAGY+H K PSEAK TV +LANV+ HFA W+DP RA + +K +SFLLN+VSCV LPPE V VL LD RL AFGALC++EP+LRR+Y V G AV+AMLE++TM+ LF+LA EV DV ACTSK+ V++ LL S + L+P+ AT+ + +++ P A +P+ TD LM L+ T GP W WG S G+W+GVTV+ GRV +L L N+L GPIPP+LGGL AL LLRL
Sbjct: 38 EVKRDLASVRESVEDCRAENMEFFASFTAGLEAAQQGIEIMRSAPLEEARMSLKNFEGSKGNVRFLETAHSKALTALVQGHTLDVKLSAAVIAVSAGYIHMSKVDCPSEAKDFTVNATLANVISHFAPTWSDPSRASKADGKKTVSFLLNIVSCVRALPPESVPVLSNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFQLAEEVDVDVDACTSKESVIQALLASGKCLLPSGATSGQAVIKSNPPVPTRVSPVKAMPAPVRDARTDRTVLMELFNTTKGPS-------------WTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLEKNNLTGPIPPSLGGLTALLLLRL 388
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5KAT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE) HSP 1 Score: 293 bits (750), Expect = 5.340e-90 Identity = 176/368 (47.83%), Postives = 221/368 (60.05%), Query Frame = 3
Query: 534 EVRRDLASMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLR-NGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEEVVWTPPPSGNGPAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWT--------------------AAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRG 1574
EV+RDLAS+R SVE CRAENM FF++F + +EA++ G++++R N PLEEAQM+LK FEAS ++ L+ A KA TALV G TL++K AA I +SAGYVH K PSEAK TV G+LANVV HFA W+DP A T + +K +SFLLN+VSCV VLPPE VL LD R+ AF ALC++EP+LR +YP V GA V AMLE+KTM+ LF LA VG DV +CTS + +V++LL+S + L+P GP P + +TD +ALM L+ TNG WT GWG S P WHGVTV G GRV L LSGN+L G
Sbjct: 13 EVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRVNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHTLDVKLNAAVIAVSAGYVHMSKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLVLPPESASVLSNLDERILPAFCALCSAEPELRCMYPKVAGAVVGAMLEQKTMRDLFHLADMVGVDVESCTSHEAMVQVLLSSGKALLP----------------------GPVP-----NATTDRSALMELFNATNGSS------WTNKTXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGTSTPLQQWHGVTVDGAGRVTTLDLSGNNLSG 347
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE) HSP 1 Score: 295 bits (756), Expect = 9.050e-90 Identity = 177/390 (45.38%), Postives = 228/390 (58.46%), Query Frame = 3
Query: 555 SMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLR----NGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVE----EVVWTPPPS-----------------GNGPAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRGPIPPALGGLAALRLLRLDENELSGE 1649
S+ ASV++CR+EN QFF +F +EA+ G+ L + PL+EA+M+LK F AS + L EA KA TALV G T+++K +AA I +SAGYV K SP EAKQ TV G+L N+V A +W D R + + KVL+FLLN+VSCVC LPP VLP+LD RL AFG LCA+EP++ R+YP VGG A +A+L +TM+ LFELA EV DV CTSKD V++ILL S + L AT K M+E +W G+G P STD AAL+AL++ TNGP W+ WG S P G+W+GVTV GRV +L+L N L G +PP L L AL +L L N+LSGE
Sbjct: 142 SVSASVDECRSENEQFFKSFTQGLEATHRGIQTLMAMQLSAPLKEAEMALKNFTASKGQVRFLDEARSKALTALVQGHTVDVKLSAAVIAVSAGYVFASKTESPLEAKQFTVNGTLVNIVDVLAPLWVDSSRGASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPEIYRMYPEVGGVAARALLAIQTMRDLFELADEVDVDVAKCTSKDEVIQILLASGKALFRAPATGVKAMLEGQTVSDLWLLARENDVDMDRCKPLVIKILLGSG-KDLKPTRDASTDRAALLALFIATNGPS-------------WKKGTAWGTSAPLGEWYGVTVDDDGRVSQLELGDNGLSGALPPELARLTALTVLDLHGNKLSGE 517
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI) HSP 1 Score: 291 bits (746), Expect = 4.510e-87 Identity = 172/388 (44.33%), Postives = 224/388 (57.73%), Query Frame = 3
Query: 555 SMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLRNGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEE-----------------------VVWTPPPSGNGPAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRGPIPPALGGLAALRLLRLDENELSGE 1649
S+ ASV++CR+EN FF +F + A+ G++ L + PL+EA+M+LK F ASG ++ L A KA TALV G T+++K +AA I +SAGYV K SP EAKQ TV G+L N+V A +W D RA + + KVL+FLLN+VSCVC LPP VLP+LD RL AFG LCA+EP + R+YP +GG A +A+L +TM+ LFELA EV DV CTSKD V++ILL S + L AT + +E V+ SG +P STD AAL+AL++ TNGP W WG + P G+W+GVTV GRV +L+L N L G IPP L AL L L EN L+GE
Sbjct: 258 SVSASVDECRSENELFFKSFTQGLAATHRGIETLMSAPLKEAEMALKNFTASGGNVRFLDVAHSKAMTALVQGHTVDVKLSAAVIAVSAGYVFASKTDSPLEAKQFTVNGTLVNIVDVLAPLWVDSSRAASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPGIYRMYPEIGGVAARALLASQTMRDLFELADEVDVDVARCTSKDEVIQILLGSGKALFRAPATGVEAKLESQTMLDLCQLAREKDVDIDRYKTHVIKILLGSGKD---LNPTRDASTDRAALLALFIATNGPS-------------WTTSTAWGTAAPLGEWYGVTVDDDGRVSQLELRENGLSGVIPPEFARLTALTKLNLGENNLTGE 629
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5JWQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.460e-55 Identity = 112/251 (44.62%), Postives = 141/251 (56.18%), Query Frame = 3
Query: 840 KAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEEVVWTPPPSGNGPAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRGPIPPAL 1592
K PSEAK TV G+LANVV HFA W+DP A T + +K +SFLLN+VSCV LPPE VL LD R+ AF ALC++EP+LR +YP V GA V AMLE+KT++ LF LA VG DV +CTS + +V++LL+S + L+P G P + +TD +ALM L+ T G W N+ GWG S P WHGVTV G GRV LKL N L + +L
Sbjct: 3 KVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLALPPESAPVLSNLDERILPAFCALCSAEPELRYMYPKVAGAVVGAMLEQKTIRDLFHLADTVGVDVESCTSHEAMVQVLLSSGKALLP----------------------GSVP-----NATTDRSALMELFNATKGSS-------------WTNKTGWGTSAPLQQWHGVTVDGAGRVTTLKLGWNKLSDSLEDSL 213
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: D8LN56_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN56_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.070e-42 Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 3
Query: 1155 MQSLFELATEVGADVTACTSKDGVVEILLTSQRDLVPTQATACKGMVEEVVWTPPPSGNG-------PAPASPLGSTSTDIAALMALYLQTNGPPEKEGRLWTAAQGGWRNRRGWGMSVPRGDWHGVTVHGRGRVIELKLSGNDLRGPIPPALGGLAALR 1613
M SL ELA EV DVT+C SKD +++ILL S++ L+P AT +VEE +P PSG G P P P+GS STD A LMA+Y +TNGPPEK+ R W AA+G W+ R+GWG S P G+W VTV GRV L+L N+L+GPIP ALGGL AL+
Sbjct: 1 MHSLMELAMEVDEDVTSCASKDKIIQILLASEKALLPGGATGDDTLVEEDARSPLPSGKGAGPAVVAPIPGPPVGSASTDRAVLMAVYHETNGPPEKKARPWAAAKGAWQKRKGWGKSSPLGNWDRVTVDRLGRVTTLELQFNNLKGPIPSALGGLTALQ 160
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: D7G6V2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V2_ECTSI) HSP 1 Score: 132 bits (332), Expect = 3.940e-30 Identity = 83/252 (32.94%), Postives = 136/252 (53.97%), Query Frame = 3
Query: 546 DLASMRASVEQCRAEN----------MQFFSNFMSSIEASQHGLDVLRNGPLEEAQMSLKEFEASGDD----LDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGSPSEAKQATVKGSLANVVQHFATIWADPLRAGTVEERKVLSFLLNVVSCVCVLPPEDVLVLPELDCRLFSAFGALCASEPQLRRLYPHVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVVEILLTSQRDL 1259
D+AS+R+ +++ + EN +Q F ++ S Q G + R+ L++A+M L EF +G LD+ KE+ + +L + F A I I+A + + P+ AK G NV+ F + W DP A T V+ +LL++VS VC+LPPE L+LP+LD RL AFG LC+SEP + YP VGGAAV+A+L+ K + L ++ +G D+ C ++ +++ +L ++ +
Sbjct: 119 DMASLRSCIDKAQRENSKCFQQVSSRLQAFEEYVRSHHQQQDGKSLQRS--LKKARMCLIEFTGTGGGEPQLLDQAKESCMEILIREPHSDSLRVHFLAGCIAIAASFTKHAQQEPPARAKAYVFDGVFRNVMLSFESFWTDPCAARTRNGICVVEYLLSIVSSVCMLPPEG-LLLPQLDDRLVKAFGVLCSSEPSILDRYPEVGGAAVRALLQSKPLDELCRMSKSLGVDIALCDNRADLIQGMLDKRKSI 367
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5JUZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.200e-26 Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 3
Query: 303 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWTGDVVLKARDKSQLTNQQGRGGGDAAMRAVEQYGHEV 539
MSGLEP IP AWGALRLT+SL+TAGFKKLVGVEDES+ L+EW+GDVVLKARD S+ T Q+G DAA RAVEQ+ E
Sbjct: 1 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEDESDALVEWSGDVVLKARDTSRRTQQKG---SDAAARAVEQHREET 76
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Match: A0A6H5KIE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.780e-25 Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 3
Query: 534 EVRRDLASMRASVEQCRAENMQFFSNFMSSIEASQHGLDVLRNGPLEEAQMSLKEFEASGDDLDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKIKAGS 851
EV+RDLAS+R SVE CRAENM FF++F + +EA++ G++++RN PLEEAQM+LK FEAS ++ L+ A KA TALV G L++K AA I +SAGYVH K S
Sbjct: 30 EVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHALDVKLNAAVIAVSAGYVHMSKVSS 135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig88.20281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig88.20281.1 >prot_Ecto-sp13_S_contig88.20281.1 ID=prot_Ecto-sp13_S_contig88.20281.1|Name=mRNA_Ecto-sp13_S_contig88.20281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=450bp MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWTGDVVLKAback to top mRNA from alignment at Ecto-sp13_S_contig88:30528..39261- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig88.20281.1 ID=mRNA_Ecto-sp13_S_contig88.20281.1|Name=mRNA_Ecto-sp13_S_contig88.20281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88:30528..39261- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig88:30528..39261- >mRNA_Ecto-sp13_S_contig88.20281.1 ID=mRNA_Ecto-sp13_S_contig88.20281.1|Name=mRNA_Ecto-sp13_S_contig88.20281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig88:30528..39261- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |