mRNA_Ecto-sp13_S_contig8794.20270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8794.20270.1
Unique NamemRNA_Ecto-sp13_S_contig8794.20270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 4.360e-119
Identity = 181/186 (97.31%), Postives = 184/186 (98.92%), Query Frame = 1 
Query:    4 VCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            +CMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYES+GTILIQYSFPSG QSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSF+QRMTFTVGTSITTGRSNCVIWNGVHHKTNT GGSSSFGYPDPGYFGRVKAELLAKGIQ
Sbjct:  232 LCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFEQRMTFTVGTSITTGRSNCVIWNGVHHKTNTTGGSSSFGYPDPGYFGRVKAELLAKGIQ 417
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A6V1P2Q7_HETAK (RING-type E3 ubiquitin transferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P2Q7_HETAK)

HSP 1 Score: 205 bits (521), Expect = 3.270e-56
Identity = 103/190 (54.21%), Postives = 126/190 (66.32%), Query Frame = 1 
Query:    4 VCMDPFSPQEP--ALLLSQCQ-GHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYE-SEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            +C+D F  ++   A+ L  CQ GHY HA C   +F A  P+CP C   +  + GDQPDGTMTV T      PL G+  + GTI++QY FPSG Q  +H NPG  Y GTSRTAYLPD A GREVL LLR++FDQR+ F VG S+TTGR N  +WNG+HHKT   GG  +FGYPD  Y  RVK EL +KGI+
Sbjct:   52 ICLDEFFDEDSKRAMKLEGCQEGHYFHAKCAA-LFLAKKPECPMCKHRFAEITGDQPDGTMTVSTQANQ--PLPGFPPNSGTIILQYHFPSGIQGPQHSNPGQPYSGTSRTAYLPDTAEGREVLGLLRRAFDQRLVFRVGQSVTTGRDNATVWNGIHHKTRREGGPQNFGYPDQDYLRRVKDELRSKGIE 238
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A3Q1JLL6_ANATE (E3 ubiquitin-protein ligase n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JLL6_ANATE)

HSP 1 Score: 201 bits (512), Expect = 1.740e-55
Identity = 99/187 (52.94%), Postives = 125/187 (66.84%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+C+D F+ ++      +C+  +    C+ Q  K++GP CP C  ++G + GDQPDG M+VRT       L GY    TI+I Y  PSGRQ+ KHP PG  YHG SR+AYLPDN  GREVL LLRK+FDQ++ FTVGTS TTG  N V WN +HHKT+T+GG   FGYPDP Y  RV+ EL AKGI+
Sbjct:   25 PICIDTFTNKKRL----KCKHEFCDE-CLKQAEKSLGPICPVCKDVFGVVEGDQPDGKMSVRTEY---FSLPGYSYCQTIVITYDIPSGRQTEKHPKPGQPYHGISRSAYLPDNKEGREVLQLLRKAFDQKLIFTVGTSRTTGLENQVTWNDIHHKTSTSGGPQGFGYPDPDYLSRVREELKAKGIK 203
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A8C4ADI3_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ADI3_9TELE)

HSP 1 Score: 201 bits (510), Expect = 2.760e-55
Identity = 97/187 (51.87%), Postives = 127/187 (67.91%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+C+D    ++  +       H   + C+ Q  ++MG  CP C  ++G + G QP+GTM    H   +  L+GY   GTI+IQYSFPSG Q++KHP+PG  Y+GT+RTAYLPDN  GREV  LL+++FDQ++ FTVGTS TTG  +CV WN +HHKT+T GGS SFGYPDP Y  RVK EL AKGI+
Sbjct:   20 PICLDKIVKEKKLVC-----NHKFCSDCLQQSIESMGACCPVCKNVFGKVEGTQPEGTMKHSCH---STSLTGYPECGTIVIQYSFPSGVQTTKHPHPGKHYNGTNRTAYLPDNKEGREVHQLLKRAFDQKLIFTVGTSRTTGTDDCVTWNDIHHKTSTHGGSGSFGYPDPEYLLRVKEELKAKGIE 198
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A835ZAV4_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.290e-55
Identity = 96/147 (65.31%), Postives = 108/147 (73.47%), Query Frame = 1 
Query:  118 CPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGI 558
            CPTC  MYG + GDQP+GTM V T     +  SGY   GTI+I Y+F SG Q  KHP+PG  Y GTSR AYLPD   GR VLALL++ FDQR+TFTVGTS+TTG  NCVIWNGVHHKT T GG  +FGYPDP YF RVKAEL AKG+
Sbjct:    1 CPTCGIMYGSVIGDQPEGTMNVTTSPH--MHCSGYAGAGTIVINYAFSSGIQGPKHPHPGQRYSGTSRVAYLPDTPDGRAVLALLQRCFDQRLTFTVGTSVTTGIPNCVIWNGVHHKTRTNGGVQAFGYPDPTYFERVKAELAAKGV 145
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A3Q1JVZ0_ANATE (E3 ubiquitin-protein ligase n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1JVZ0_ANATE)

HSP 1 Score: 201 bits (512), Expect = 2.370e-54
Identity = 99/187 (52.94%), Postives = 125/187 (66.84%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+C+D F+ ++      +C+  +    C+ Q  K++GP CP C  ++G + GDQPDG M+VRT       L GY    TI+I Y  PSGRQ+ KHP PG  YHG SR+AYLPDN  GREVL LLRK+FDQ++ FTVGTS TTG  N V WN +HHKT+T+GG   FGYPDP Y  RV+ EL AKGI+
Sbjct:  109 PICIDTFTNKKRL----KCKHEFCDE-CLKQAEKSLGPICPVCKDVFGVVEGDQPDGKMSVRTEY---FSLPGYSYCQTIVITYDIPSGRQTEKHPKPGQPYHGISRSAYLPDNKEGREVLQLLRKAFDQKLIFTVGTSRTTGLENQVTWNDIHHKTSTSGGPQGFGYPDPDYLSRVREELKAKGIK 287
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A8C6SH48_9GOBI (E3 ubiquitin-protein ligase n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6SH48_9GOBI)

HSP 1 Score: 199 bits (506), Expect = 2.400e-54
Identity = 100/187 (53.48%), Postives = 125/187 (66.84%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            PVCMD F+ +     L +C+ H     C+ +  K+MG  CP C  ++G + GDQP+GTMT RT+      L G+ S GTI I Y+ PSG Q++KHPNPG  Y GT RTAYLPDN  G EVL LL+K+FDQ++ FTVGTS T+G  N V WN +HHKT+T GG   FGYPDP Y  RVK EL AKG++
Sbjct:   48 PVCMDVFTKKTK---LEKCK-HEFCEDCLERSVKSMGAMCPVCKDVFGLVEGDQPNGTMTWRTNY---TRLPGFGSCGTIEINYNIPSGTQTAKHPNPGKLYQGTQRTAYLPDNKEGNEVLMLLKKAFDQKLIFTVGTSRTSGAENMVTWNDIHHKTSTYGGPQGFGYPDPNYLSRVKDELKAKGVK 227
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A3B3DW98_ORYME (E3 ubiquitin-protein ligase n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3DW98_ORYME)

HSP 1 Score: 197 bits (502), Expect = 3.290e-54
Identity = 96/187 (51.34%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+C+ PF+ +E       C+  +    C+ Q  K+ GP CP C K++G + GDQPDGTMT     + + P+ G+   GTI I YS PSGRQ+ KHP PG  Y GTSRTAYLPDN  G EVL LL+K+FDQ++ FT+G S TTG  + V WN +HHKTN  GG  S+GYPDP Y  RV+ +L AKGI+
Sbjct:   20 PICLSPFTDKESL----SCKHEFCKL-CLQQAEKSSGPICPVCRKVFGIIQGDQPDGTMTWM---KSSGPVPGFSHCGTITITYSIPSGRQTEKHPKPGHFYTGTSRTAYLPDNKEGNEVLMLLKKAFDQKLIFTIGASRTTGCEDQVTWNDIHHKTNLYGGPGSYGYPDPNYLSRVREQLKAKGIE 198
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: UPI002015412E (E3 ubiquitin-protein ligase DTX3L-like n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI002015412E)

HSP 1 Score: 199 bits (507), Expect = 5.900e-54
Identity = 101/187 (54.01%), Postives = 124/187 (66.31%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+CMD F+ +E       C GH     C+ Q  ++MG  CP C K++G + GDQPDG MT  T       L G++  G+I+I Y  PSG QSSKHP PG  + G  RTAYLPDN  GREVLALL+K+FDQR+ FTVGTS T+G  +CV WN VHHKT+T GG+ SFGYPD  Y  RV+ EL AKGI+
Sbjct:   88 PICMDEFTDKEKL----SC-GHAFCKDCLRQSVESMGASCPVCKKVFGKIVGDQPDGMMTHYTQN---TCLPGFKRCGSIVINYHIPSGIQSSKHPKPGRPFQGARRTAYLPDNKEGREVLALLKKAFDQRLIFTVGTSRTSGMEDCVTWNDVHHKTSTHGGAQSFGYPDDDYLKRVRDELKAKGIE 266
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BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Match: A0A671Y6X3_SPAAU (E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671Y6X3_SPAAU)

HSP 1 Score: 195 bits (496), Expect = 1.980e-53
Identity = 96/187 (51.34%), Postives = 126/187 (67.38%), Query Frame = 1 
Query:    1 PVCMDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGVHHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ 561
            P+C D F  ++      +C+ H +   C+ Q+ K MGP C     ++G + G QPDG M+V+   +  + L G+E  GTI+I Y FP G+Q+ +HPNPG  YHGTSRTAYLPDN  G+EVL LL+K+F+Q++ FTVGTS TTG  N V WN +HHKT T+GG  SFGYPDP Y  RV+ EL AKGI+
Sbjct:   18 PICKDTFKNKKQL----KCK-HELCEECLEQLKKHMGPVCXXXKDVFGVIEGTQPDGKMSVQ---KSYLSLPGFEGYGTIVISYYFPDGKQTERHPNPGQRYHGTSRTAYLPDNKEGKEVLHLLQKAFNQKLIFTVGTSTTTGIKNQVTWNDIHHKTLTSGGPQSFGYPDPDYLSRVRDELKAKGIE 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8794.20270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIP8_ECTSI4.360e-11997.31RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A6V1P2Q7_HETAK3.270e-5654.21RING-type E3 ubiquitin transferase n=1 Tax=Heteros... [more]
A0A3Q1JLL6_ANATE1.740e-5552.94E3 ubiquitin-protein ligase n=1 Tax=Anabas testudi... [more]
A0A8C4ADI3_9TELE2.760e-5551.87E3 ubiquitin-protein ligase n=1 Tax=Denticeps clup... [more]
A0A835ZAV4_9STRA4.290e-5565.31RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A3Q1JVZ0_ANATE2.370e-5452.94E3 ubiquitin-protein ligase n=2 Tax=Anabas testudi... [more]
A0A8C6SH48_9GOBI2.400e-5453.48E3 ubiquitin-protein ligase n=1 Tax=Neogobius mela... [more]
A0A3B3DW98_ORYME3.290e-5451.34E3 ubiquitin-protein ligase n=1 Tax=Oryzias melast... [more]
UPI002015412E5.900e-5454.01E3 ubiquitin-protein ligase DTX3L-like n=1 Tax=Alo... [more]
A0A671Y6X3_SPAAU1.980e-5351.34E3 ubiquitin-protein ligase n=1 Tax=Sparus aurata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8794contigEcto-sp13_S_contig8794:16..6439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score385.6
Seed ortholog evalue1.3e-104
Seed eggNOG ortholog2880.D8LIP8
Preferred nameDTX3L
Model size3713
KEGG koko:K06058
KEGG Pathwayko04330,map04330
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000323,GO:0002230,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004842,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006325,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006996,GO:0007034,GO:0007041,GO:0008047,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0016043,GO:0016192,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031347,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032092,GO:0032101,GO:0032268,GO:0032269,GO:0032446,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033523,GO:0033554,GO:0034641,GO:0035561,GO:0035563,GO:0036211,GO:0042393,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043412,GO:0043632,GO:0043900,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045739,GO:0045893,GO:0045935,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050688,GO:0050691,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051338,GO:0051340,GO:0051347,GO:0051348,GO:0051352,GO:0051438,GO:0051444,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051865,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097677,GO:0098772,GO:0140096,GO:1900180,GO:1900182,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901664,GO:1901666,GO:1902680,GO:1902965,GO:1902966,GO:1903320,GO:1903321,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1905666,GO:1905668,GO:2000112,GO:2000644,GO:2000646,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001032,GO:2001034,GO:2001141
Exons6
EggNOG free text desc.regulation of NAD ADP-ribosyltransferase activity
EggNOG OGs2CTH7@1,2RGAW@2759
EC2.3.2.27
Cds size555
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8794.20270.1prot_Ecto-sp13_S_contig8794.20270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8794 25..3290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464152.0182705-UTR-Ecto-sp13_S_contig8794:15..241681464152.0182705-UTR-Ecto-sp13_S_contig8794:15..24Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8794 16..24 +
1681464152.0879736-UTR-Ecto-sp13_S_contig8794:3290..64391681464152.0879736-UTR-Ecto-sp13_S_contig8794:3290..6439Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8794 3291..6439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464152.0296705-CDS-Ecto-sp13_S_contig8794:24..1691681464152.0296705-CDS-Ecto-sp13_S_contig8794:24..169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 25..169 +
1681464152.0385284-CDS-Ecto-sp13_S_contig8794:729..9111681464152.0385284-CDS-Ecto-sp13_S_contig8794:729..911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 730..911 +
1681464152.04744-CDS-Ecto-sp13_S_contig8794:1433..15241681464152.04744-CDS-Ecto-sp13_S_contig8794:1433..1524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 1434..1524 +
1681464152.0563345-CDS-Ecto-sp13_S_contig8794:2302..23591681464152.0563345-CDS-Ecto-sp13_S_contig8794:2302..2359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 2303..2359 +
1681464152.0657523-CDS-Ecto-sp13_S_contig8794:2622..26651681464152.0657523-CDS-Ecto-sp13_S_contig8794:2622..2665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 2623..2665 +
1681464152.076278-CDS-Ecto-sp13_S_contig8794:3253..32901681464152.076278-CDS-Ecto-sp13_S_contig8794:3253..3290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8794 3254..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8794.20270.1

>prot_Ecto-sp13_S_contig8794.20270.1 ID=prot_Ecto-sp13_S_contig8794.20270.1|Name=mRNA_Ecto-sp13_S_contig8794.20270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MDPFSPQEPALLLSQCQGHYMHAPCIMQVFKAMGPKCPTCSKMYGPLHGD
QPDGTMTVRTHRRGAIPLSGYESEGTILIQYSFPSGRQSSKHPNPGSAYH
GTSRTAYLPDNAAGREVLALLRKSFDQRMTFTVGTSITTGRSNCVIWNGV
HHKTNTAGGSSSFGYPDPGYFGRVKAELLAKGIQ*
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mRNA from alignment at Ecto-sp13_S_contig8794:16..6439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8794.20270.1 ID=mRNA_Ecto-sp13_S_contig8794.20270.1|Name=mRNA_Ecto-sp13_S_contig8794.20270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8794:16..6439+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGTGTGCATGGACCCTTTCAGCCCGCAGGAGCCGGCGCTGCTGCTGTC
GCAGTGCCAGGGGCACTACATGCACGCGCCGTGCATCATGCAGGTCTTCA
AGGCGATGGGGCCCAAATGCCCGACCTGCTCCAAGATGTACGGTCCGCTG
CACGGTGAGAAGACACAAAACACCCCCCATCGGCGAGAACACGCACATCT
CTCTCTCTTTTTGTGTACGAAATCCGTCTCGAACGGGATGCGTGGTCATG
ATCCAATGACTCGTGTGTCAAACGTATTGTGAGCCCCCCATCTCCTGCTT
CATTAATAGGATAGGCAGGCTAGGAAACAGTTTGAGCCACCTTTGGCAAC
GTAGGAAGGAACGATTAGCCATCGGTGGACGATTTGGTGGGAATAATGCT
CCGTCCTCTCGAGGACGCGTGGTCTAACAACTACGGCATGAAAAACAGAA
GAGTACGCCCGCTCCCCTGCTCCACCCCCGAATGATTCCACCACGTTGGG
GCGGGTAACAGCGCTACTAGAATGCTCCGAGCCTGACGCAGACACACTTT
CGCTTGCCGCACTGTCCTGAAGTTTCTGTTCTAGGACGTTTTTAGTTCGC
CTTTCCCCGTGACGTCATTTCCGCCCCCCGCCCCCACCCCCACTCTCTTT
TTGTCTGTGTTGAAACTTTAACCTGGGGGCTGCTGCTGTTGAACTGTGGG
CTTTCGCCTCGCAGGTGACCAACCTGACGGGACAATGACCGTGCGAACCC
ACCGTCGCGGAGCAATACCCCTTTCGGGCTACGAGTCGGAGGGTACGATT
CTCATCCAGTACAGCTTCCCCTCCGGCAGGCAGAGCTCGAAACATCCCAA
CCCGGGGAGTGCGTACCACGGCACCTCGCGAACGGCCTACCTACCGGTAG
GCGTTGGCGTGAATTAGGATCGTGCTTGTCGTCGTCGTTGTTGTTGTGCT
TGTTGTTGTTTCTTGTTCTTTTGTTTTTTGGTGTTTCGCCAATCTCGAAT
GATGAAAATCTTTTTGAGAGGACCACCCGGGGTGATGTTCAGTGTTTGTT
GTTTGTTTCTATGGTGGGTAGTCCAAAGAACAGAAGGTCTGACGTAAGCC
CCGTGATCCGCACGATCTACCCTTCCTGTTCGTGAGCGACAACCGCGCTC
GTGTGCACGATAGTCTCCCCAAGCAGACGCGTTTAAAATAGTCTGCATGC
GTGCAAGGGTACGGATTTGTGGTTGCGTTCTTGCTTGAGACTCAGCAATC
GGTACACCTAGAATAGTTCGGCTTCCAGCAGGTTCATATCGAGCTTTTGT
ATACGCTAAATTCGGAGTTTTTTGCATGACAAACGCTTTGTTTTGCTCCA
GTTGTGTTTCATCACGATATTTTTTGTTTCTGTCGACCTGTTCTCTACCG
ATGGTGGTGGTACTTCAGGACAATGCGGCGGGCAGGGAGGTACTGGCACT
GCTGAGGAAGTCGTTCGACCAGAGGATGACCTTCACCGTCGGAACTTCCA
TTACCACAGGTGATACATCATTGCGGGCGAAAATGTTTCGGTAAAAAGTT
TTTCTGGCTAAGCGGTCCCTGGTCTTGGTCCTTGATGTCGCTTTGCTCAT
ATAGCTCCTCGCTATGTACTACGGCGAACCCCGTGGTTTGGGAATATGCA
AAATGACCACGTCAGGCTCGAATGTAGGAGTTGGTCGATGGCCAGGCGCA
CTTGAAATATTGTGTTGGTGTGGGCATGGTGCTTGATGACCTTCGGCAAA
GTTGATGATTGTGTTGGGAACAGCAGGCAGGACACTGGTGGGCTGGGTCC
GCCCGACAATCGCTTTGGTCGCTAGGGCAAGCGATGAGACTGGGCGATTT
GTATTTTTGGCTGAGTCTTTTGTGATATTCTCCGGCATGGGCCTCAGGCT
GCGTGATCTGCACGAAGAGTGCTGGCCTTCCGGTTATGACTCTGAATGAT
GCACAGGGAATCTCATGAGAGGTTAACTCGTCGCAAGGCGCTAACTCGTG
GCCAGAAGCAAGGCAGCACTTTCTGCAATGAATAGTGCACACGCTGAGGA
AGAGATAGGCTCCAACTCAAGACGTTTAATGTTCAGCGATGTTGGACGTC
AATTGCATTTTGAACGAACCTTGCCGCGAGCACCCCAGCGCTCCCCCCTT
GCAGCGGCCCCGCATTTGGTACATTCTTGACCTCTCCATACCCCTCGAAC
CCTGGACCGAGACCGAAAACCGCGTGTCCTGTCCTATCCCTCACCCTCAT
GTCATTCCTCGTCATCATCGAACCGTTGCCGGTGCAGGGCGTTCTAACTG
TGTCATCTGGAACGGCGTTCACCACAAGACAAACACCGCTGGAGGTGAGG
TGTATCTAGTAGTAGATCCCGCCGCGTGTTGACTGTGTGATGCAATAGGA
GCAGCTTGCGTTGCTCACTGCTGCCGTCTTTGTCGTTGCTGCTCTTGCTA
CCGAATACGCCTGTAGATGTCACGTTTGGCCAAGGCAAGGCAAGTTGACC
AGTTCTCTGTGCGTTTCCTGCTGTTCCTGCTGCTCCTGCTGCTCCTGCTG
TTCCTGCCGTTCTTGTTGTTTCTGCTGCTTTCCACGATGGTTGCGATGGT
GTTCCAGGAAGCTCTTCGTTCGGCTACCCTGATCCTGGCTACTTTGGACG
GTATGGATTCGATCTGTGTTAAATGAAACACTCCTATGCATAGGTTTTGG
CATCCCCCCCCCCCACCCGCACTTTGTTCGAATCCAGCCTCGCATTTATT
TCCTAGACTACGAGAAGGTGGTTAGCACGTTAATACCAAGTCATTTCGTG
TGTGGTATTCAAAGTCGTATGATCCCAGCGCTACTGTTTGTGGAACGAGC
TACAATGTAATGTTGTGCACGTCTCTTTGGTTTGTTTTTTTCTGGTGTGG
TTGTGAGTACGTTTTTGTTTGGTGCAGACATCTAAGGCTGCCAACGACTC
TCAATCCCTCGCTTTGCATGACAAGATCTTTGGTTTACTCACGTTCGCGC
ATGGTCGTATCTGTTGTCTGTCAATTCCAATGTAATTAATCCATTGCAAT
AGCAGTAGCGGATCAGCAAGGGATCAATCATGTTTTCGATAGTGGCCGCT
CGCCATACGGGTATGGGAGACTAGAAATCATGCTCTGTTGTCATGCCTGT
CTCGCTTACATCTTTCCGCCCTCAACCTTTGCTTTGTTTCTTAACCACTG
GCATGGTGTCACATGACCGGGCCTCCTTAAAATCGCAGGGTGAAGGCGGA
GCTACTTGCCAAGGGCATCCAATGAGCACGCCCCGTCCCGTGACTTTGCT
TGCGGATTATAATGCATTCGAGGTCAGTTCTGTGTATGTAGGTGGGCTGT
TGTGAAGGCATTAGCGAACATGACGCTCCTTTGTAACCAACGACGGAACC
CGACGAGAGGGAAGACATCAAGCAGCCTGGTGTGGTCGACCACCGCGGCA
AGGTAGCTTGTGTCGCACGCTGAGCTGACTTTTCGGGGTCCCGAGGCCGC
CACAAATATTCTGGTAGAGAAATTGCCTTGGCCGAACAGGAATGGCTGGC
CCTACCGGAGACATCGCACGTAAAGTTCCCCGAAGGACCCGTGTCGTCAT
TGTTTACCGCCTTCTTTTGTTGCTGAGCAATCACGACGTGGACAAATAGG
TGTGTTTGTGCTCGTGTGTGAAGTGAGTATTTTGTTCATGTTTTCCTTGC
AATTAGGGGGGCGGCGGGACAGAAACATAATTTATGAGGGACGAGTTCCG
ATTCGCTTTGAGACTAGCCACGGCGTGCCGTTTGCTTTGGACGTACGATG
CGAGGGTCGTGGCATCGCGCCGTTGTCTTGTCTGTACCCTCCGATGCGGA
GCTGTACCTCTCCCCCCCTCCCTCGGCTCTCACCTCTTTTGTTCGTTGCG
CCCGTACTCAGCGTAGGCTTAGCTCTTCGATGAGCCTAGCACCGTCATCG
CACTCTTGATTCTAAAAGAGAATTTCATGTTTTCATGTAGCGGGGGTGCC
TTGACTGCGGGCCATTGCGATTCTACCATCATTTGGTCCCTTGTTCGCTG
CTTGGGACAGGTTCAAAGTAGGCGGAAGGGGGAGGAAAGTTCGTTTGTTG
GTCATCATTCCGCACGGCACGTCCCTCGTTGGAGTCGGGGGGGCGTGTGG
GAGGGGTTCGAAATTGAAGCTGTGGAGGCATGCTTGTCCTTGACGGTTAT
TGCGCCTTTTAGCCTGGATCAGCTGAGCGTTCTCTCGTGTGGTTTATTGT
CGTTTCCGAATGCCGGCCGCCTGGTGACGAAAATATAGCTTAATTTGTTG
GGGTGCCGTTGTGCTGCTGTAGGTTGTCCTTCAACGCAGAACTAGTACAC
AATTCCACGACCGTGGCAGGGGATGGACGATCTACGCCCCAGAGCGCAAA
ACCGCATCAGCAAGAAGTCGAGGCTGCGTGGAGCTTTCTTTGCCGCTATA
TGTATGAGGACCGCGTTAATTGCTTGCCGCTGCTCCTTCTGAACCACAAT
GAACTGCTGTACGCTCACCGGTGCGGTTTGCTATGGTTTCAAAGAGTGGT
GCTTTTGGCTGGGCCTCCGTACATCCCACCTTTGTTTTGCCTGTCCCACG
GAGAAGCGGCGCGATCTACGTCATCGTTTTTTAAGCATTGTCCTCATAGA
CGCTATCGTGCGGTGTCGTACGAACCACAGTCAACCGACGGTCAACCACG
AGGGTTTGATGCCTATCGCACGCTACATGGTGATTTCGCTTATGCATATG
AGCACCGATGGCGTATCCCCTCGGCCGCGAGGCCTGTCCAGCATCGTGGG
GTGGTGCGTTCGGGGGCGGGCGGCAAATGTTATTGTGGAGAAACTGGGGT
ATTTGGTTGTGGTGACGGCGACGCGCAAAGATTTTGGTGTATTTCTGCCT
TTGTGCAGTCGATTTCAAAGGCCTTAGCGAAGGAACCAGCTCTACTGTAG
TCCGGTTCGCATTTTTTTTTGCCAAACTTCCTTTTTTGACTGCTGTTTTG
GTGTGGTCTCTAGCTGCTCCTGGATAAGCAATAGGTGGAGAGTCCTTGAC
AGCAGCAGTGCCGGTGGAATTGTGTCACTGCCCGTCATAGTGCCGATGGT
ATTGCGTGGGACAAGTGAATGCCGTTCCGGCAACGATTATTATTGTTTCG
TTTTTTTCTGTCCCCCAGATGTTCTTCATTCTCTGAATAGTGCCGGTTCG
GCTATCGTGCTGATGTTCTTGTCGGGCATATACCCCCGGGAGAGGAGCTG
GAGGTGAAAGAGTGCGCTGTTGACAGCCCTCACTGTATGCTTCGATGTGC
TCTGGTGATGGTGTTCCTGTTTTGCAAGCGGCTACCTGGTGGTCCGTGCG
TAGGTTTCAACCCACAAAAAGTAGTGGAGGGAGGGAGTCGACAGCGAAAA
AATGTTGATATGGAGTATTGATGGTTGTGTGGGCGTAAGTTTGTTTATCC
CATCTTTTCTGGCGCCAGGCTACACACCTGTCGGCGTACCTGTGACATCA
GCCGGGGTCACCGTGGTGCAAACGAAAAAGGGACGAGACGAAGTCTGGGC
GGTAGCCGAGGGAGTGGGCGAAAAGAAAAGTTGTATAGACTATTGACTCT
GTGTAGACGACACGATGGGTAAATATTTATCGACGAACGCTCCCAGATAT
TACAGGGCCGTCGGTGCAACCATTTTACCACGGAGTGTTGGTTTCACTGC
TGTCCTGTGACGACTTGCATTCGTTTCGTTGGTCATCGTCTCCTTCAAGG
TTCTTGTGCTGAAGTCCTGTCTCCGACATGATGACTGCTTCCACACCGAC
CAAAATACCCGGCGGTGGTACGGGCACTAACTGTTCGTTGTGTGGCTTTG
TGGGATTGCGTTAGCGGCCTCGCTGCCGGCGTGAATTCAACTGGCCTATT
GACGGAGTCGTGTGACCGGCCTCCCTGCAGCAGCTATCGCTCGGGGAAGA
CTTAAAGAAACCTGTGGCATGCTTCACTGTGCGGGGCTCATTTCACCCAG
CTAATCACCGGCATCGTGTGGCCGGCCTCCCTACGGAGTCTGACGCGGCT
TGGAGTGAGCCTGCTCTGAAGGCGTCTGTACTCTGCAACAGATGCTGTCA
GCGCGCTTTTTCCCACTTCAAGGTGGCTGGGGGATTTTGTTGTAGTCGCA
CTTTTGCTTGGTAGACAGGGCTGCGAAGGTAATTATAAGGAGAGACACCG
TACGTAAAGGTCGTTGCAGGGAGCGACTGCTTTTAGTCACTGGCCTTGGC
ATGGCCGTTCAGATCAGCATAGGTGGCGAGGGGTGGAACTATCGCGAACA
CCATGTGTTCGTGCTGTCAGTTTTGTTCACCTTGTCCCACCCCCTGTGCC
TGGTTGACAATACACAAGAAATGAGGATCCCTTCTGTTCCAGCTTGGGAG
CGGGTGTCTCCGTGAGTCAACTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8794:16..6439+

>mRNA_Ecto-sp13_S_contig8794.20270.1 ID=mRNA_Ecto-sp13_S_contig8794.20270.1|Name=mRNA_Ecto-sp13_S_contig8794.20270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8794:16..6439+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCTTTCAGCCCGCAGGAGCCGGCGCTGCTGCTGTCGCAGTGCCA
GGGGCACTACATGCACGCGCCGTGCATCATGCAGGTCTTCAAGGCGATGG
GGCCCAAATGCCCGACCTGCTCCAAGATGTACGGTCCGCTGCACGGTGAC
CAACCTGACGGGACAATGACCGTGCGAACCCACCGTCGCGGAGCAATACC
CCTTTCGGGCTACGAGTCGGAGGGTACGATTCTCATCCAGTACAGCTTCC
CCTCCGGCAGGCAGAGCTCGAAACATCCCAACCCGGGGAGTGCGTACCAC
GGCACCTCGCGAACGGCCTACCTACCGGACAATGCGGCGGGCAGGGAGGT
ACTGGCACTGCTGAGGAAGTCGTTCGACCAGAGGATGACCTTCACCGTCG
GAACTTCCATTACCACAGGGCGTTCTAACTGTGTCATCTGGAACGGCGTT
CACCACAAGACAAACACCGCTGGAGGAAGCTCTTCGTTCGGCTACCCTGA
TCCTGGCTACTTTGGACGGGTGAAGGCGGAGCTACTTGCCAAGGGCATCC
AATGA
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