mRNA_Ecto-sp13_S_contig8787.20260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8787.20260.1
Unique NamemRNA_Ecto-sp13_S_contig8787.20260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.890e-72
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 MKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEE 369
            MKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEE
Sbjct:  684 MKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEE 806          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-19
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   49 ADTTISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNP 360
            A T   D   E +LE+W   G+ LYP +ARAARV+   PAS+AVLERDF+ A  ++  +RS   A YVEMVLFL+GN + IP ++P+L     Q  +P RLSNP
Sbjct:  535 AGTLTDDLSCEGVLEWWKKWGR-LYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNP 637          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.720e-19
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 1
Query:  118 LYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRL-SAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNE 366
            +YP +AR ARV+   PAS+AVLERDFS AGR++T +R  + S  YVEM+LFL+GN + IP ++ KL+++  +  +P RL+NP E
Sbjct:    5 VYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVE 88          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.160e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 1
Query:   79 EVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNE 366
            E +L++W     A YP +AR ARV+   PAS+AVLERDFS AGR++T +RS + + YVEM++FL+GN + IP ++ KL+++  +  +P RL+NP E
Sbjct:  605 EDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVE 699          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-17
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   79 EVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNE 366
            E +L++W     A YP +AR ARV++   AS+AVLE DFS AGR++T +RS + + YVEM+LFL+GN + IP ++ KL+++  +  +P RL+NP E
Sbjct:  378 EDVLKWWKMWAHA-YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVE 472          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-16
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   58 TISDYPIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVP 306
            TI +   + +L++W     + YP +ARAARV+   PAS+AVLE DF  AGR++T +RS   A YVEM+LFL+GN + IP ++P
Sbjct:   28 TIDELSCDSVLKWWK-RWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIP 109          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.600e-13
Identity = 46/116 (39.66%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   16 QQEFDRFMARFADTTISDYPIEVLLEFWAGEG-QALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM-EVPKLSKSQGQEAVPRRLSN 357
            +Q  D+ + R+  T  S    +++L FW  +  Q  +  +   ARVL S+P+SSA +ERDF TAGR++T  RS L+   V+M  FLN N+ Y+ + + PKLS +   E   RR SN
Sbjct:    3 EQLIDKQLDRWLTTPTS---FDLVLSFWKRQQEQGNFRLLPLVARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTYVDITQCPKLSPNTADE---RRPSN 112          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A662XSL6_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSL6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.630e-10
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   19 QEFDRFMARFADTTIS-DYPIEVLLEFWAGEGQ-ALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM-EVPKLSKSQGQEAVPRRL 351
            +E DR++       ++     E +L FW  + +   +  +   ARVL S P+SSA +ERDF TAGR++T  RS L+   V+M  FL+ N+ Y+ + + PKLS+S   E +P  +
Sbjct:  190 EELDRWLTTPTSLCVTRPGKFESILSFWKRQQELGNFRLLPLVARVLFSKPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNRSYVDITQCPKLSQSTATERLPSNV 303          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A662XG42_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG42_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.190e-10
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   79 EVLLEFWAGEGQ-ALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPM-EVPKLSKSQGQEAVPRRL 351
            E ++ FW  + +   +  +   ARVL S+P+SSA +ERDF TAGR++T  RS L+   V+M  FL+ N  Y+ + + PKLS+S   E +P  +
Sbjct:  130 ESIMSFWKRQQELGNFRLLPLVARVLFSMPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNTSYVDITQCPKLSQSTATERLPSNV 222          
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Match: A0A3N0XFY9_ANAGA (Zinc finger BED domain-containing protein DAYSLEEPER n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0XFY9_ANAGA)

HSP 1 Score: 62.0 bits (149), Expect = 1.650e-9
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   73 PIEVLLEFWAGEGQALYPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGN 279
            P +VLL  W  E    +PN+A  AR +LS+PASSA  ERDFSTAG +I   R++L    V+ +LFL+ N
Sbjct:   94 PFDVLL--WWKENAKTFPNLAMIARKILSIPASSAASERDFSTAGFVIQEQRTQLKPGTVDDILFLHSN 160          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8787.20260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE1.890e-72100.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.240e-1950.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.720e-1951.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE3.160e-1947.92Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.160e-1746.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE1.010e-1648.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A225UGF7_9STRA6.600e-1339.66Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A662XSL6_9STRA3.630e-1035.96Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]
A0A662XG42_9STRA4.190e-1039.78Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A3N0XFY9_ANAGA1.650e-949.28Zinc finger BED domain-containing protein DAYSLEEP... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8787contigEcto-sp13_S_contig8787:639..1007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog4792.ETI54656
Model size369
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CZK4@1,2SARG@2759,3QH9R@4776
Cds size369
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464151.1616895-CDS-Ecto-sp13_S_contig8787:638..10071681464151.1616895-CDS-Ecto-sp13_S_contig8787:638..1007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8787 639..1007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8787.20260.1prot_Ecto-sp13_S_contig8787.20260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8787 639..1007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8787.20260.1

>prot_Ecto-sp13_S_contig8787.20260.1 ID=prot_Ecto-sp13_S_contig8787.20260.1|Name=mRNA_Ecto-sp13_S_contig8787.20260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MKEVCQQEFDRFMARFADTTISDYPIEVLLEFWAGEGQALYPNMARAARV
LLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPME
VPKLSKSQGQEAVPRRLSNPNEE
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mRNA from alignment at Ecto-sp13_S_contig8787:639..1007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8787.20260.1 ID=mRNA_Ecto-sp13_S_contig8787.20260.1|Name=mRNA_Ecto-sp13_S_contig8787.20260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8787:639..1007- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGGTCTGCCAGCAGGAGTTCGACCGCTTCATGGCGCGCTTCGC CGACACCACCATCTCGGACTACCCGATAGAGGTGCTGCTGGAGTTCTGGG CGGGCGAGGGGCAGGCGCTCTACCCAAACATGGCCCGCGCCGCCAGGGTA CTGTTGTCGGTGCCGGCGTCTTCGGCGGTGCTCGAGAGGGACTTCAGCAC AGCTGGGCGCCTGATCACCGGGGCACGTAGTCGTCTCAGTGCGGCTTATG TGGAGATGGTGCTGTTCCTCAACGGCAACCAAGAGTACATCCCGATGGAG GTGCCCAAGCTGTCAAAATCGCAGGGCCAGGAGGCGGTGCCAAGACGGCT TTCCAACCCCAACGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8787:639..1007-

>mRNA_Ecto-sp13_S_contig8787.20260.1 ID=mRNA_Ecto-sp13_S_contig8787.20260.1|Name=mRNA_Ecto-sp13_S_contig8787.20260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8787:639..1007- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGGTCTGCCAGCAGGAGTTCGACCGCTTCATGGCGCGCTTCGC
CGACACCACCATCTCGGACTACCCGATAGAGGTGCTGCTGGAGTTCTGGG
CGGGCGAGGGGCAGGCGCTCTACCCAAACATGGCCCGCGCCGCCAGGGTA
CTGTTGTCGGTGCCGGCGTCTTCGGCGGTGCTCGAGAGGGACTTCAGCAC
AGCTGGGCGCCTGATCACCGGGGCACGTAGTCGTCTCAGTGCGGCTTATG
TGGAGATGGTGCTGTTCCTCAACGGCAACCAAGAGTACATCCCGATGGAG
GTGCCCAAGCTGTCAAAATCGCAGGGCCAGGAGGCGGTGCCAAGACGGCT
TTCCAACCCCAACGAGGAG
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