mRNA_Ecto-sp13_S_contig878.20252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: D8LEJ3_ECTSI (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ3_ECTSI) HSP 1 Score: 1064 bits (2752), Expect = 0.000e+0 Identity = 796/977 (81.47%), Postives = 803/977 (82.19%), Query Frame = 1
Query: 1 MWITAWALPFAISATYILHCSAIATLPRISSRGNASASVRKPTGRNRSTSSSLNHAA-VAAASPRSRPPLQAPLTVAILLESLGDVPQRILRHLAASPPASQLEPTLSGSGARASRAQAKLRALLEAVESVVVGAPEKDDGLTSAAARVVAGCPALLLLDGKELLNQATQLRDMEGVTEETAAQLAVEYPGYFTLPPAARARIGFFVGEVGLTAKDVGRLAKRRPDVIENIGGGHVRRLVDLLLEDLHVGKAALLRMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPVVDWLGAPDPEARQXXXXXXXXXXXXXXXXXXXXXXXARDEAKARPLPSSXXXXXXXXXXXXXXXSYTSVRLTINSSGLDRKSGRDRIAAANTAGFPDDAGELTLRRAAREEVAAAGQGAGPEPQRAEPTLAVPVYTEGGGWDWGLGFGREERGKIVCKQGDLLWKSVVGNLAESASWFVEEVGLSWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMQAMRAVGAPPAFRHLRALCNYPEDRFSAWLERIVLDADGPSSPATVFSAASPPRPRPGRRLGGDADDPPTSSLSTTSLAELGITYAAATRNASRRQRWEAXXXXXXXXXXXXXXXXFAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEAL----------GPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAASAAGVSLSLSLLEAPSARPAATGGEENASSGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXINSNGGTGGLIGLESLSPSP 2898
MWITAWALPFAISAT+ LHCSAIATLPRISSRGN SASVRKPTGRNRS SSSLNHAA V AASPR RPPLQAP TVAILLESLGDVPQR LRHLA SPPASQLE TLSGSGARASRAQAKLR LLEAVESVVVGA EKDDGL SAA RVVAGCPALLLLDGKELLN+ TQLRDMEGVTEETAAQLAVEYPGYFTLPPAARARIGFFVG+VGLTAKDVGRLAKRRPDVIENIGGGHVRRLVDLLLEDLHVGKAALLRMV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPVVDWLGAPDPEA+ XXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX SVR T N SGLDRKSGRDRIAAA TAGFPDDAGELTLRRAAREEVAA GQGAGPEPQRAEPTLAVPVYTEG G FGREER KIVCKQGDLLWKSVVGNLA+SASWFVEEVGLSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AMRA GAPPAFRHLRALCNYPEDRFSAWLERIVLDAD SSPAT SA SP RPRPGRRLGGDADDPPTSSLSTTSLAELG+TYAAAT NA RRQ XXXXXXXXXXXXXXXXFAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAAR VRTATKNARANGLDD ATFLKAD+AAFAGAS GPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAASAAGVSLSLSLLEA SARP ATGGEENASSGSSG XXX SN GTG LIGLESLSPSP
Sbjct: 1 MWITAWALPFAISATHGLHCSAIATLPRISSRGNPSASVRKPTGRNRSRSSSLNHAAAVVAASPR-RPPLQAPFTVAILLESLGDVPQRTLRHLAGSPPASQLELTLSGSGARASRAQAKLRGLLEAVESVVVGAQEKDDGLASAATRVVAGCPALLLLDGKELLNRGTQLRDMEGVTEETAAQLAVEYPGYFTLPPAARARIGFFVGKVGLTAKDVGRLAKRRPDVIENIGGGHVRRLVDLLLEDLHVGKAALLRMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRPVVDWLGAPDPEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXSASVRQTTNPSGLDRKSGRDRIAAATTAGFPDDAGELTLRRAAREEVAAVGQGAGPEPQRAEPTLAVPVYTEGVGXXXXXXFGREERRKIVCKQGDLLWKSVVGNLAKSASWFVEEVGLSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------AMRAAGAPPAFRHLRALCNYPEDRFSAWLERIVLDADDSSSPATASSAVSPSRPRPGRRLGGDADDPPTSSLSTTSLAELGLTYAAATMNAPRRQXXXXXXXXXXXXXXXXXXXXFAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARAVRTATKNARANGLDDAATFLKADVAAFAGASXXXXXXXXXXXXXXXXXXXXXGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAASAAGVSLSLSLLEARSARPPATGGEENASSGSSGNDSKSRGSAIGGTSXXXSERNSAKDRDRNISNSGTGVLIGLESLSPSP 911
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A4D9CY43_9STRA (PUA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY43_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 2.020e-16 Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 2167 KALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAASAAGVSLSL 2679
+ +++ L+RG VLDL C TGGFALNAA GGAR IGVD +A + TA +NARAN L+ TF K+D+ +A LG KA+D+V+ DPP LA + R RA+ + ++ +V +V SGG LV+ + + PEE + T AA G S+++
Sbjct: 325 RQMIQSLSRGKRVLDLFCYTGGFALNAARGGAREAIGVDSSALAIETAMENARANDLEGHVTFCKSDVLVYA-----------RDLGKTGEKAFDIVIADPPK-LAPTRRDLPRALHKYLKINRAVFRMVA-SGG-LVLTHTCSAALTQDPEEFRKMVTQAAHDVGRSITI 481
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A3M7KSP6_AUXPR (Methyltrans_SAM domain-containing protein (Fragment) n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KSP6_AUXPR) HSP 1 Score: 85.9 bits (211), Expect = 1.490e-13 Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = 1
Query: 2143 FAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLV 2580
F + + + ++R+L++G VLDL C TGGFALNAAAGGA V+G+D + R V A NA NGLD V TF + D+ A+ S PG WD+VV+DPP LA ++ RA + +T + +V P GG+L+
Sbjct: 286 FYADQRDSRLVLRQLSKGKRVLDLCCYTGGFALNAAAGGATHVLGLDSSHRAVHAAAANAALNGLDQVLTFERQDMKAWGRGSQPP---------PG---GWDMVVLDPPK-LAPGKKAMVRATRQYTAYNAAAMRLVAP-GGLLM 417
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A2P6VPY9_9CHLO (Ribosomal RNA large subunit methyltransferase I n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VPY9_9CHLO) HSP 1 Score: 85.5 bits (210), Expect = 5.680e-13 Identity = 62/146 (42.47%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 2143 FAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLV 2580
F + + +A++R LA G VLD+ C +GGFALNAAAGGA + +GVD +A V A +NA NGL A F+KAD AF +AL ERK WD+VV DPP LA S ++ +A + + +L +V P GG+L+
Sbjct: 315 FYADQRDSRAVLRGLAAGKTVLDMCCYSGGFALNAAAGGATAAMGVDSSATAVALAARNAELNGLQ--AEFVKADSTAFM----------KQALA--ERKQWDIVVFDPPK-LAPSRKTLDKATRKYRKLNAMAMQLVEP-GGLLM 444
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A6U0E2A8_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A6U0E2A8_9CHLO) HSP 1 Score: 83.6 bits (205), Expect = 9.330e-13 Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 1
Query: 2143 FAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLV 2580
F + E + +R L+RG VLD+ C TGGFALNAA GGA SV+ VD + +R A +NA N + D F++AD F EA+ GE +D+VV+DPP F A + +S +A+ + L + ++RP GG+L+
Sbjct: 314 FYVDQRENRMAIRDLSRGKKVLDVCCYTGGFALNAAVGGATSVVAVDSSDAALRVAARNAELNNVQDKINFVRADAFDFM----------QEAIDRGESGTYDVVVLDPPKF-APNKQSLTKALPKYVGLNKRAMALLRP-GGVLI 447
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A2R6XIF6_MARPO (PUA domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XIF6_MARPO) HSP 1 Score: 80.1 bits (196), Expect = 1.030e-11 Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 2143 FAPGRAEVKALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDV-ATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSG 2568
F + E + +R L G VLDL C +GGFALNAAAGGA V GVD + + A NA NG+D +TF++ DI F S S A E ++WD+V++DPP LA + + +RA+ + RL V+ PSG
Sbjct: 286 FYADQRESRFFLRSLCEGKTVLDLCCYSGGFALNAAAGGASHVTGVDSSGPAIELARANAALNGIDPCRSTFIRQDIKNFL---SHSVA---------EGRSWDVVILDPPK-LAPNRKVLSRAITQYRRLNALAMKVINPSG 415
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A4S9U5_OSTLU (PUA domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9U5_OSTLU) HSP 1 Score: 77.8 bits (190), Expect = 5.860e-11 Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 2167 KALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLV 2580
+ ++R++ARG VLD+ C TGGFALNAA GGA V+ VD + + A KNA NGL D F++AD F + AE + G ++D+VV+DPP F A + + +A+ + L + ++RP GG+L+
Sbjct: 307 RKVMREIARGKRVLDVCCYTGGFALNAALGGASDVVAVDSSESALDMAKKNAELNGLQDKVNFVRADAFDF---------MQAE-IDAGRAGSYDVVVLDPPKF-APTKPALKKAIPKYVGLNKRAMTLLRP-GGILI 432
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A0S8C7N4_9PROT (23S rRNA methyltransferase n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C7N4_9PROT) HSP 1 Score: 76.6 bits (187), Expect = 8.060e-11 Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 2167 KALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLV 2580
+ LVR LARG DVLD C TGGF++NAAAGGARSV+ VD ++ + A +NA N + V ++++ D+ ER+A+DLVV+DPP F A +A A+A +A+ ++ ++RP GG+LV
Sbjct: 210 RQLVRTLARGRDVLDGFCYTGGFSVNAAAGGARSVLAVDSSSEALELARQNAGLNAVSGV-SWVEDDVFLLLRKLRD------------ERRAFDLVVLDPPKF-APTAAHVAKAARAYKDISLLAFKLLRP-GGILV 332
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A5J4YKT0_PORPP (Ribosomal RNA large subunit methyltransferase I n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKT0_PORPP) HSP 1 Score: 77.4 bits (189), Expect = 1.010e-10 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1
Query: 2143 FAPGRAEVKALVRKLAR-GLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAASAAGVSLSL 2679
F + E + VR L R G++VLDL C +G FALN A GAR V+GVD + +R AT NA NGL + +F++ ++ + +EAL G + +D+V++DPP K A ARA+ + R+ +VRP G L+V + V TP + +A AG ++SL
Sbjct: 389 FYSDQRENRLHVRSLCRPGMEVLDLYCYSGAFALNCAVSGAR-VLGVDSSEPAIRAATANAAVNGLSEQCSFVQQEVVKYM----------SEALREGGPQQFDVVILDPPKLAPKRA-GLARALGMYRRVNRLALQLVRPGG--LLVTHSCSAAVTSTPGLLLKTVHESAKEAGRTISL 554
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Match: A0A150H0H4_GONPE (PUA domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0H4_GONPE) HSP 1 Score: 77.0 bits (188), Expect = 1.120e-10 Identity = 66/153 (43.14%), Postives = 83/153 (54.25%), Query Frame = 1
Query: 2194 GLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARVVRTATKNARANGLDDVATFLKADIAAFAGASSSSAAVNAEALGPGERKAWDLVVVDPPSFLAKSARSTARAVKAFTRLAESVALVVRPSGGMLVVVYEPGDGVFDTPEEMTAVFTSAA 2652
G VLDL C +GGFAL AAA GA V+GVD + V A +NAR NGLD ATFL+AD+ S A+ AE L G + +D+VV+DPP LA S ARA + RL +V P GG+L+ G E T++ T AA
Sbjct: 345 GPSVLDLCCYSGGFALAAAAAGASRVVGVDSSESAVSLAAQNARLNGLDGAATFLRADV---------SEAMKAE-LAAGRQ--YDIVVLDPPK-LAPDRASLARARIKYIRLNTLAMRLVAP-GGLLMSC--SCSGAMTQSGEFTSMLTQAA 481 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig878.20252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig878.20252.1 >prot_Ecto-sp13_S_contig878.20252.1 ID=prot_Ecto-sp13_S_contig878.20252.1|Name=mRNA_Ecto-sp13_S_contig878.20252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1059bp MWITAWALPFAISATYILHCSAIATLPRISSRGNASASVRKPTGRNRSTSback to top mRNA from alignment at Ecto-sp13_S_contig878:9528..18254- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig878.20252.1 ID=mRNA_Ecto-sp13_S_contig878.20252.1|Name=mRNA_Ecto-sp13_S_contig878.20252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8727bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:9528..18254- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig878:9528..18254- >mRNA_Ecto-sp13_S_contig878.20252.1 ID=mRNA_Ecto-sp13_S_contig878.20252.1|Name=mRNA_Ecto-sp13_S_contig878.20252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:9528..18254- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |