mRNA_Ecto-sp13_S_contig878.20251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig878.20251.1
Unique NamemRNA_Ecto-sp13_S_contig878.20251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig878.20251.1 vs. uniprot
Match: A0A6H5K6T6_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T6_9PHAE)

HSP 1 Score: 360 bits (924), Expect = 8.180e-111
Identity = 216/251 (86.06%), Postives = 225/251 (89.64%), Query Frame = 2 
Query:    5 TARPVAGLPHKRLWLRLREQLERGGSGELSPAGLAYALRYAEGVVAAAPTVEDVGVLLLGAEGGGGEGGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXXXXXAAVGAMLAPLAADGNREALLGVQQAMHAHGLVAALLGALRMLGRGSTTDRGGRPQEDEEAKAAEGVRKNGGREGGGGSXXXXXXXETNEGAAWTADGNGAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGLEKLVSAGSM 757
            TARPVAGLPHKRLWLRLREQLERGGSGELSPAGLA ALRYAEGV+A APTVEDVGVLLLGAEGGGGEGGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXXXXXAAVGAMLAPLAADGNREALLGVQQAMHAHGLV ALLGA R+L  GSTTD G   +EDEEA+AA GVRKN G +GG          ET+E AAWT D +GAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGL++LVSAGSM
Sbjct: 1438 TARPVAGLPHKRLWLRLREQLERGGSGELSPAGLACALRYAEGVIATAPTVEDVGVLLLGAEGGGGEGGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXXXXXAAVGAMLAPLAADGNREALLGVQQAMHAHGLVTALLGATRVLSLGSTTDSGRHAREDEEARAAGGVRKNEGWDGG----------ETSERAAWTDDCSGAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGLDELVSAGSM 1678
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BLAST of mRNA_Ecto-sp13_S_contig878.20251.1 vs. uniprot
Match: D8LEJ4_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 2.590e-73
Identity = 169/251 (67.33%), Postives = 176/251 (70.12%), Query Frame = 2 
Query:    5 TARPVAGLPHKRLWLRLREQLERGGSGELSPAGLAYALRYAEGVVAAAPTVEDVGVLLLGAEGGGGEGGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXXXXXAAVGAMLAPLAADGNREALLGVQQAMHAHGLVAALLGALRMLGRGSTTDRGGRPQEDEEAKAAEGVRKNGGREGGGGSXXXXXXXETNEGAAWTADGNGAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGLEKLVSAGSM 757
            TARPVAG PHKRLWLRLREQLERGGSGELSPAGLA ALRYAEGVVAAAPTVEDVGVLLLGAEGGGG+GGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXX                                                              A+A EGVRKNGG +     XXXXX  ET+EG AWT DG+GAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGL++LVSAGSM
Sbjct: 1360 TARPVAGFPHKRLWLRLREQLERGGSGELSPAGLACALRYAEGVVAAAPTVEDVGVLLLGAEGGGGKGGLIAMVCASVLEQRHLRAVREWPPLGXXXXXXXXXXXX--------------------------------------------------------------ARATEGVRKNGGWD----XXXXXXGGETSEGVAWTDDGSGAQTEAALCACVELLSRLVLLSPHFSQQFLEEGGLDELVSAGSM 1544
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig878.20251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6T6_9PHAE8.180e-11186.06Non-specific serine/threonine protein kinase n=1 T... [more]
D8LEJ4_ECTSI2.590e-7367.33Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig878contigEcto-sp13_S_contig878:6647..7406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size761
Hectar predicted targeting categoryother localisation
Exons1
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.0426764-CDS-Ecto-sp13_S_contig878:6646..74051681464150.0426764-CDS-Ecto-sp13_S_contig878:6646..7405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 6647..7405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig878.20251.1prot_Ecto-sp13_S_contig878.20251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig878 6647..7405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig878.20251.1

>prot_Ecto-sp13_S_contig878.20251.1 ID=prot_Ecto-sp13_S_contig878.20251.1|Name=mRNA_Ecto-sp13_S_contig878.20251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
GDGEACGRLASQAAVAEAARAAGARGFGRAVPRRPRLRAALRGRRRRRRP
DRGGCRGAFARGGRRGRGRRSHRHGVRKRSRTAAPASSSRVAAAWRRRWR
WKGGCCCRRDGRGGRDASPAGRRWKPRSSLGGAASDARSRVGGRSARGVK
DAGPWQHHRQRRSSTGGRGGESGRRGAKKRGSGRWRRQRPQRRRRRDQRG
SGVDSRWQRRPNRGRPVRVRRAPVAPRSPLAALQPAVPRGRGAGKAGFRR
VHA
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mRNA from alignment at Ecto-sp13_S_contig878:6647..7406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig878.20251.1 ID=mRNA_Ecto-sp13_S_contig878.20251.1|Name=mRNA_Ecto-sp13_S_contig878.20251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:6647..7406+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGACGGCGAGGCCTGTGGCAGGCTTGCCTCACAAGCGGCTGTGGCTGA
GGCTGCGCGAGCAGCTGGAGCGCGGGGGTTCGGGAGAGCTGTCCCCCGCC
GGCCTCGCCTACGCGCTGCGCTACGCGGAAGGCGTCGTCGCCGCCGCCCC
GACCGTGGAGGATGTCGGGGTGCTTTTGCTCGGGGCGGAAGGCGGGGGCG
GGGAAGGCGGTCTCATCGCCATGGTGTGCGCAAGCGTTCTCGAACAGCGG
CACCTGCGAGCAGTTCGAGAGTGGCCGCCGCTTGGAGGCGCCGGTGGCGG
TGGAAAGGTGGGTGTTGCTGCCGTCGTGACGGCCGCGGTGGGCGCGATGC
TAGCCCCGCTGGCCGCCGATGGAAACCGCGAAGCTCTCTTGGGGGTGCAG
CAAGCGATGCACGCTCACGGGTTGGTGGCCGCTCTGCTCGGGGCGTTAAG
GATGCTGGGCCGTGGCAGCACCACCGACAGAGGCGGTCGTCCACAGGAGG
ACGAGGAGGCGAAAGCGGCAGAAGGGGTGCGAAAAAACGGGGGTCGGGAA
GGTGGCGGCGGCAGCGGCCGCAGCGGCGGCGGCGGCGAGACCAACGAGGG
AGCGGCGTGGACAGCCGATGGCAACGGCGCCCAAACAGAGGCCGCCCTGT
GCGCGTGCGTCGAGCTCCTGTCGCGCCTCGTTCTCCTCTCGCCGCACTTC
AGCCAGCAGTTCCTCGAGGAAGGGGGGCTGGAAAAGCTGGTTTCCGCCGG
GTCCATGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig878:6647..7406+

>mRNA_Ecto-sp13_S_contig878.20251.1 ID=mRNA_Ecto-sp13_S_contig878.20251.1|Name=mRNA_Ecto-sp13_S_contig878.20251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:6647..7406+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGACGGCGAGGCCTGTGGCAGGCTTGCCTCACAAGCGGCTGTGGCTGA
GGCTGCGCGAGCAGCTGGAGCGCGGGGGTTCGGGAGAGCTGTCCCCCGCC
GGCCTCGCCTACGCGCTGCGCTACGCGGAAGGCGTCGTCGCCGCCGCCCC
GACCGTGGAGGATGTCGGGGTGCTTTTGCTCGGGGCGGAAGGCGGGGGCG
GGGAAGGCGGTCTCATCGCCATGGTGTGCGCAAGCGTTCTCGAACAGCGG
CACCTGCGAGCAGTTCGAGAGTGGCCGCCGCTTGGAGGCGCCGGTGGCGG
TGGAAAGGTGGGTGTTGCTGCCGTCGTGACGGCCGCGGTGGGCGCGATGC
TAGCCCCGCTGGCCGCCGATGGAAACCGCGAAGCTCTCTTGGGGGTGCAG
CAAGCGATGCACGCTCACGGGTTGGTGGCCGCTCTGCTCGGGGCGTTAAG
GATGCTGGGCCGTGGCAGCACCACCGACAGAGGCGGTCGTCCACAGGAGG
ACGAGGAGGCGAAAGCGGCAGAAGGGGTGCGAAAAAACGGGGGTCGGGAA
GGTGGCGGCGGCAGCGGCCGCAGCGGCGGCGGCGGCGAGACCAACGAGGG
AGCGGCGTGGACAGCCGATGGCAACGGCGCCCAAACAGAGGCCGCCCTGT
GCGCGTGCGTCGAGCTCCTGTCGCGCCTCGTTCTCCTCTCGCCGCACTTC
AGCCAGCAGTTCCTCGAGGAAGGGGGGCTGGAAAAGCTGGTTTCCGCCGG
GTCCATGCG
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