mRNA_Ecto-sp13_S_contig878.20250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig878.20250.1
Unique NamemRNA_Ecto-sp13_S_contig878.20250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig878.20250.1 vs. uniprot
Match: D8LEJ4_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.510e-47
Identity = 148/180 (82.22%), Postives = 149/180 (82.78%), Query Frame = 3 
Query:    3 CPIRPMPLREVAAVASQXXXXXXRFHL--ASSHPPSPSGAAAGLDVDMKAAVELASSVWRQTAQQLLEDTAIGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LGIFGEEAGPDRGFRDRRGPPTTNAVAALCGIICDV--EEGDDEEDEGEDATPWDSPGSAAYHRDETA 527
            CPIRPMPLRE A     XXXXXX      ASSHPPSPSGAA GLDVDMKAAVELASSVWRQTAQQLLEDTA GGNG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L  FGEEAGPDRGFRDRRGPPTTNAVAALCGIICDV  EE          +T WDSPGSAAYHRDETA
Sbjct:  824 CPIRPMPLREAAXXXXXXXXXXXXXXXXXASSHPPSPSGAAVGLDVDMKAAVELASSVWRQTAQQLLEDTASGGNGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFFGEEAGPDRGFRDRRGPPTTNAVAALCGIICDVQDEEXXXXXXXXXXSTRWDSPGSAAYHRDETA 1003
[Close]
BLAST of mRNA_Ecto-sp13_S_contig878.20250.1 vs. uniprot
Match: A0A6H5K6T6_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T6_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 2.320e-41
Identity = 140/181 (77.35%), Postives = 143/181 (79.01%), Query Frame = 3 
Query:    3 CPIRPMPLREVAAVASQXXXXXXR-FHLASSHPPSPSGAAAGLDVDMKAAVELASSVWRQTAQQLLEDTAIGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----LGIFGEEAGPDRGFRDRRGPPTTNAVAALCGIICDVEEGDDEEDEGEDATPWDSPGSAAYHRDETA 527
            CPIRPMPLRE A     XXXXXX  FHLASSHPPSPS AAAGL+V MKAAV+LASSVWRQTAQQLLEDT      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     L  F EEAGP RGFRDRRGPPTTNAVAALCGIICDVEE           T WDSPGS AY+RDETA
Sbjct:  895 CPIRPMPLREAAXXXXXXXXXXXXXFHLASSHPPSPSRAAAGLNVGMKAAVDLASSVWRQTAQQLLEDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLDFFDEEAGPGRGFRDRRGPPTTNAVAALCGIICDVEEXXXXXXXXXXXTRWDSPGSTAYYRDETA 1075
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig878.20250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEJ4_ECTSI1.510e-4782.22Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5K6T6_9PHAE2.320e-4177.35Non-specific serine/threonine protein kinase n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig878contigEcto-sp13_S_contig878:4670..5199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.5
Seed ortholog evalue1.4e-39
Seed eggNOG ortholog2880.D8LEJ4
Preferred nameMKK2
Model size530
KEGG koko:K06228
KEGG Pathwayko04341,map04341
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006996,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007224,GO:0007227,GO:0007228,GO:0007275,GO:0007276,GO:0007349,GO:0007584,GO:0008064,GO:0008092,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008589,GO:0009524,GO:0009553,GO:0009558,GO:0009561,GO:0009605,GO:0009653,GO:0009791,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010639,GO:0010646,GO:0010647,GO:0014070,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019894,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030030,GO:0030031,GO:0030554,GO:0030832,GO:0030833,GO:0030837,GO:0031156,GO:0031272,GO:0031323,GO:0031326,GO:0031333,GO:0031344,GO:0031667,GO:0032101,GO:0032104,GO:0032107,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032956,GO:0032970,GO:0033043,GO:0033206,GO:0033273,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043326,GO:0043327,GO:0043412,GO:0043900,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0045880,GO:0048229,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051301,GO:0051321,GO:0051493,GO:0051494,GO:0051593,GO:0051704,GO:0051716,GO:0060176,GO:0060255,GO:0060271,GO:0060491,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0097159,GO:0097367,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0140013,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901698,GO:1901700,GO:1902410,GO:1902903,GO:1902904,GO:1903046,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.positive regulation of hh target transcription factor activity
EggNOG OGsKOG0597@1,KOG0597@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-21_004430.1
EC2.7.11.1
Cds size513
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.197951-UTR-Ecto-sp13_S_contig878:4669..46861681464150.197951-UTR-Ecto-sp13_S_contig878:4669..4686Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig878 4670..4686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464150.2211413-CDS-Ecto-sp13_S_contig878:4686..51991681464150.2211413-CDS-Ecto-sp13_S_contig878:4686..5199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig878 4687..5199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig878.20250.1prot_Ecto-sp13_S_contig878.20250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig878 4687..5199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig878.20250.1

>prot_Ecto-sp13_S_contig878.20250.1 ID=prot_Ecto-sp13_S_contig878.20250.1|Name=mRNA_Ecto-sp13_S_contig878.20250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MPLREVAAVASQQQQQEQRFHLASSHPPSPSGAAAGLDVDMKAAVELASS
VWRQTAQQLLEDTAIGGNGGGAGEGTGGGSRRGDGDGNASFAAVEEKNGG
GGGGLGIFGEEAGPDRGFRDRRGPPTTNAVAALCGIICDVEEGDDEEDEG
EDATPWDSPGSAAYHRDETAA
back to top

mRNA from alignment at Ecto-sp13_S_contig878:4670..5199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig878.20250.1 ID=mRNA_Ecto-sp13_S_contig878.20250.1|Name=mRNA_Ecto-sp13_S_contig878.20250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:4670..5199+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTCCGATTCGCCCCATGCCCCTCAGGGAGGTGGCGGCGGTTGCTAGC
CAGCAGCAGCAGCAGGAGCAGCGATTTCACTTGGCCTCCAGTCACCCTCC
ATCACCATCGGGTGCTGCTGCGGGTCTCGACGTTGACATGAAGGCGGCTG
TGGAGCTCGCCTCCTCGGTGTGGCGGCAGACGGCGCAGCAGCTGCTGGAG
GACACTGCGATCGGCGGCAACGGTGGTGGTGCAGGCGAGGGCACCGGCGG
TGGTTCTCGTCGTGGTGATGGTGATGGCAACGCCAGCTTCGCGGCGGTAG
AAGAAAAGAACGGCGGCGGCGGCGGCGGCCTTGGTATTTTTGGCGAGGAG
GCTGGACCGGACCGTGGGTTTCGAGACCGCCGGGGTCCTCCGACCACCAA
CGCCGTTGCGGCGCTCTGCGGCATCATTTGCGACGTGGAGGAGGGAGACG
ACGAGGAGGACGAGGGCGAGGACGCGACGCCCTGGGACTCGCCGGGTTCG
GCTGCGTACCACCGGGACGAAACCGCTGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig878:4670..5199+

>mRNA_Ecto-sp13_S_contig878.20250.1 ID=mRNA_Ecto-sp13_S_contig878.20250.1|Name=mRNA_Ecto-sp13_S_contig878.20250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig878:4670..5199+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCTCAGGGAGGTGGCGGCGGTTGCTAGCCAGCAGCAGCAGCAGGA
GCAGCGATTTCACTTGGCCTCCAGTCACCCTCCATCACCATCGGGTGCTG
CTGCGGGTCTCGACGTTGACATGAAGGCGGCTGTGGAGCTCGCCTCCTCG
GTGTGGCGGCAGACGGCGCAGCAGCTGCTGGAGGACACTGCGATCGGCGG
CAACGGTGGTGGTGCAGGCGAGGGCACCGGCGGTGGTTCTCGTCGTGGTG
ATGGTGATGGCAACGCCAGCTTCGCGGCGGTAGAAGAAAAGAACGGCGGC
GGCGGCGGCGGCCTTGGTATTTTTGGCGAGGAGGCTGGACCGGACCGTGG
GTTTCGAGACCGCCGGGGTCCTCCGACCACCAACGCCGTTGCGGCGCTCT
GCGGCATCATTTGCGACGTGGAGGAGGGAGACGACGAGGAGGACGAGGGC
GAGGACGCGACGCCCTGGGACTCGCCGGGTTCGGCTGCGTACCACCGGGA
CGAAACCGCTGCC
back to top