mRNA_Ecto-sp13_S_contig87765.20247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: D8LJA4_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA4_ECTSI) HSP 1 Score: 238 bits (606), Expect = 1.960e-73 Identity = 138/188 (73.40%), Postives = 142/188 (75.53%), Query Frame = 1
Query: 1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQLGDHY 564
GDMNVAHED+DFYNPE+KRTRKAAGTTPEERSSFAVNLLGCHP XXXXXXXXXXXXXX NKAEGSGCSLVDTFREKHPK TGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLD DTVGVSDHCPVG+VL+LGDHY
Sbjct: 309 GDMNVAHEDVDFYNPEQKRTRKAAGTTPEERSSFAVNLLGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------NKAEGSGCSLVDTFREKHPKVTGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDRDTVGVSDHCPVGVVLRLGDHY 477
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S4D5F5_HETAK (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5F5_HETAK) HSP 1 Score: 90.5 bits (223), Expect = 1.220e-19 Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
+DTFR KHP+A+G +SYWS RARNRP NRG+R+DY L S+ L + + DAF+L +T G +DHCPV LVL+
Sbjct: 87 FIDTFRWKHPEASGAYSYWSQRARNRPYNRGLRIDYALVSQRLE--NRIIDAFILHEETEGRNDHCPVALVLK 157
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S0DQ90_9EUKA (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DQ90_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 9.020e-19 Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 325 CSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGG----------DG-------VHDAFVLDMDTVGVSDHCPVGLVL 546
C L+DTFR HPKA GV+SYWS RARNR NRG+RLDY + ++ LV G DG V D+FVLD T+GVSDH PVGL+L
Sbjct: 334 CELIDTFRHLHPKAKGVYSYWSQRARNRDWNRGLRLDYFVVNKKLVEGTHDISVDNAADGSKSTKIRVVDSFVLDSSTLGVSDHAPVGLLL 424
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7R9Y652_MICPS (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y652_MICPS) HSP 1 Score: 88.2 bits (217), Expect = 5.250e-18 Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDG------VHDAFVLDMDTVGVSDHCPVGLVLQL 552
+ DTFR HP ATG F+YWS R NRPVNRG+RLDY +AS ++ G V D FVLD TVGVSDH PVG+ L +
Sbjct: 164 MSDTFRHFHPDATGWFTYWSQRVGNRPVNRGLRLDYFVASNDILSGGSRCDVAEVVDGFVLDAITVGVSDHAPVGVTLAV 243
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S3W719_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W719_EMIHU) HSP 1 Score: 84.7 bits (208), Expect = 3.780e-17 Identity = 62/187 (33.16%), Postives = 78/187 (41.71%), Query Frame = 1
Query: 1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLD---MDTVGVSDHCPVGLVLQL 552
GDMNVAHED+DF+NP E+RT AGTTPEER+S L PP + D FR+ H +A G ++YWS RAR RP NRG+R+DY L + GV A V+D + + SDHCP+ L L L
Sbjct: 74 GDMNVAHEDVDFHNPAERRTLTQAGTTPEERASLRCFLA----PP---------------------------------------------------------------LGMRDAFRQVHGRAAGQYTYWSQRARARPANRGLRIDYFLLA------SGVPPAAVVDVQHLQEMHGSDHCPILLELDL 187
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: W7TRL7_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRL7_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.510e-16 Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 301 GNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLV-GGD---GVH---DAFVLDMDTV--GVSDHCPVGLVLQL 552
G EG+G +VD+FR HP TG +SYWS+RA NRP NRGMRLDY LAS+ ++ GGD GV D+F+LD D +SDH PVG++L++
Sbjct: 475 GRLLEGAG--MVDSFRHYHPDVTGCYSYWSMRAGNRPYNRGMRLDYFLASKNMLRGGDEGGGVPRLLDSFILDQDPAVSKLSDHAPVGVLLEV 565
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7J6P2G4_PEROL (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P2G4_PEROL) HSP 1 Score: 84.3 bits (207), Expect = 9.620e-16 Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
+DTF HP+ATG FSYWSVRARN+P NRG+RLDY +A+ G D + DAF+L+ D DHCPVG+ +
Sbjct: 356 FIDTFANMHPEATGCFSYWSVRARNKPKNRGLRLDYVMAAPGFP-TDRIKDAFILE-DFAPHGDHCPVGVTFK 426
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A5J4Z455_PORPP (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z455_PORPP) HSP 1 Score: 83.2 bits (204), Expect = 2.340e-15 Identity = 63/184 (34.24%), Postives = 75/184 (40.76%), Query Frame = 1
Query: 1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVH--DAFVLDMDTVGVSDHCPVGLVL 546
GD+NVA++DLD NP++KR K AGTT EER SFA L G VD FR P A GVFSYWS+RA NRP+NRG+RLDY + S L+ D V D + L + G SDH V L L
Sbjct: 305 GDLNVAYKDLDMVNPDDKRMLKQAGTTKEERESFARFL---------------------------------------------------------------------GTGYVDLFRYFFPDAQGVFSYWSMRANNRPINRGLRLDYFITSHNLLDSDDVRPVDCYHLKDELTG-SDHGAVVLKL 418
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: C5KUG1_PERM5 (Ap endonuclease, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KUG1_PERM5) HSP 1 Score: 77.0 bits (188), Expect = 3.950e-15 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
DTF HP ATG FSYWSVRAR++P NRG+RLDY +++ G D + DAF+L+ D +HCPVG+ +
Sbjct: 25 FTDTFAHMHPHATGCFSYWSVRARDKPRNRGLRLDYVISAPGFP-IDRIEDAFILE-DFAPHGNHCPVGVTFE 95
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S3PFH3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFH3_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.920e-15 Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGL-----VGGDG---------VHDAFVLD-MDTV-GVSDHCPVGLVL 546
VDTFR +P+A G F+YWS+RA NRP NRG+RLDYC+ASR L GD V D+F+LD +D SDHCPVG +
Sbjct: 40 FVDTFRFFNPEAQGCFTYWSMRANNRPANRGLRLDYCIASRNLCVDVDAYGDNKKKSKPGIYVGDSFILDDLDQFPSFSDHCPVGCTI 127 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig87765.20247.1 >prot_Ecto-sp13_S_contig87765.20247.1 ID=prot_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp MNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAback to top mRNA from alignment at Ecto-sp13_S_contig87765:3..566+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig87765.20247.1 ID=mRNA_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87765:3..566+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87765:3..566+ >mRNA_Ecto-sp13_S_contig87765.20247.1 ID=mRNA_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87765:3..566+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |