mRNA_Ecto-sp13_S_contig87765.20247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87765.20247.1
Unique NamemRNA_Ecto-sp13_S_contig87765.20247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: D8LJA4_ECTSI (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA4_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 1.960e-73
Identity = 138/188 (73.40%), Postives = 142/188 (75.53%), Query Frame = 1
Query:    1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQLGDHY 564
            GDMNVAHED+DFYNPE+KRTRKAAGTTPEERSSFAVNLLGCHP                         XXXXXXXXXXXXXX                   NKAEGSGCSLVDTFREKHPK TGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLD DTVGVSDHCPVG+VL+LGDHY
Sbjct:  309 GDMNVAHEDVDFYNPEQKRTRKAAGTTPEERSSFAVNLLGCHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------NKAEGSGCSLVDTFREKHPKVTGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDRDTVGVSDHCPVGVVLRLGDHY 477          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S4D5F5_HETAK (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5F5_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 1.220e-19
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:  331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
             +DTFR KHP+A+G +SYWS RARNRP NRG+R+DY L S+ L   + + DAF+L  +T G +DHCPV LVL+
Sbjct:   87 FIDTFRWKHPEASGAYSYWSQRARNRPYNRGLRIDYALVSQRLE--NRIIDAFILHEETEGRNDHCPVALVLK 157          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S0DQ90_9EUKA (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DQ90_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 9.020e-19
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  325 CSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGG----------DG-------VHDAFVLDMDTVGVSDHCPVGLVL 546
            C L+DTFR  HPKA GV+SYWS RARNR  NRG+RLDY + ++ LV G          DG       V D+FVLD  T+GVSDH PVGL+L
Sbjct:  334 CELIDTFRHLHPKAKGVYSYWSQRARNRDWNRGLRLDYFVVNKKLVEGTHDISVDNAADGSKSTKIRVVDSFVLDSSTLGVSDHAPVGLLL 424          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7R9Y652_MICPS (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y652_MICPS)

HSP 1 Score: 88.2 bits (217), Expect = 5.250e-18
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDG------VHDAFVLDMDTVGVSDHCPVGLVLQL 552
            + DTFR  HP ATG F+YWS R  NRPVNRG+RLDY +AS  ++ G        V D FVLD  TVGVSDH PVG+ L +
Sbjct:  164 MSDTFRHFHPDATGWFTYWSQRVGNRPVNRGLRLDYFVASNDILSGGSRCDVAEVVDGFVLDAITVGVSDHAPVGVTLAV 243          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S3W719_EMIHU (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W719_EMIHU)

HSP 1 Score: 84.7 bits (208), Expect = 3.780e-17
Identity = 62/187 (33.16%), Postives = 78/187 (41.71%), Query Frame = 1
Query:    1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLD---MDTVGVSDHCPVGLVLQL 552
            GDMNVAHED+DF+NP E+RT   AGTTPEER+S    L     PP                                                                 + D FR+ H +A G ++YWS RAR RP NRG+R+DY L +       GV  A V+D   +  +  SDHCP+ L L L
Sbjct:   74 GDMNVAHEDVDFHNPAERRTLTQAGTTPEERASLRCFLA----PP---------------------------------------------------------------LGMRDAFRQVHGRAAGQYTYWSQRARARPANRGLRIDYFLLA------SGVPPAAVVDVQHLQEMHGSDHCPILLELDL 187          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: W7TRL7_9STRA (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRL7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.510e-16
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  301 GNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLV-GGD---GVH---DAFVLDMDTV--GVSDHCPVGLVLQL 552
            G   EG+G  +VD+FR  HP  TG +SYWS+RA NRP NRGMRLDY LAS+ ++ GGD   GV    D+F+LD D     +SDH PVG++L++
Sbjct:  475 GRLLEGAG--MVDSFRHYHPDVTGCYSYWSMRAGNRPYNRGMRLDYFLASKNMLRGGDEGGGVPRLLDSFILDQDPAVSKLSDHAPVGVLLEV 565          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7J6P2G4_PEROL (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P2G4_PEROL)

HSP 1 Score: 84.3 bits (207), Expect = 9.620e-16
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
             +DTF   HP+ATG FSYWSVRARN+P NRG+RLDY +A+ G    D + DAF+L+ D     DHCPVG+  +
Sbjct:  356 FIDTFANMHPEATGCFSYWSVRARNKPKNRGLRLDYVMAAPGFP-TDRIKDAFILE-DFAPHGDHCPVGVTFK 426          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A5J4Z455_PORPP (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z455_PORPP)

HSP 1 Score: 83.2 bits (204), Expect = 2.340e-15
Identity = 63/184 (34.24%), Postives = 75/184 (40.76%), Query Frame = 1
Query:    1 GDMNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVAVDTIPRPNDKKSRGSSXXXXXXXXXXXXXXXXXXXXXXXXEAGDGGCDGNKAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVH--DAFVLDMDTVGVSDHCPVGLVL 546
            GD+NVA++DLD  NP++KR  K AGTT EER SFA  L                                                                     G   VD FR   P A GVFSYWS+RA NRP+NRG+RLDY + S  L+  D V   D + L  +  G SDH  V L L
Sbjct:  305 GDLNVAYKDLDMVNPDDKRMLKQAGTTKEERESFARFL---------------------------------------------------------------------GTGYVDLFRYFFPDAQGVFSYWSMRANNRPINRGLRLDYFITSHNLLDSDDVRPVDCYHLKDELTG-SDHGAVVLKL 418          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: C5KUG1_PERM5 (Ap endonuclease, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KUG1_PERM5)

HSP 1 Score: 77.0 bits (188), Expect = 3.950e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGLVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQ 549
              DTF   HP ATG FSYWSVRAR++P NRG+RLDY +++ G    D + DAF+L+ D     +HCPVG+  +
Sbjct:   25 FTDTFAHMHPHATGCFSYWSVRARDKPRNRGLRLDYVISAPGFP-IDRIEDAFILE-DFAPHGNHCPVGVTFE 95          
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Match: A0A7S3PFH3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFH3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.920e-15
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  331 LVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRGL-----VGGDG---------VHDAFVLD-MDTV-GVSDHCPVGLVL 546
             VDTFR  +P+A G F+YWS+RA NRP NRG+RLDYC+ASR L       GD          V D+F+LD +D     SDHCPVG  +
Sbjct:   40 FVDTFRFFNPEAQGCFTYWSMRANNRPANRGLRLDYCIASRNLCVDVDAYGDNKKKSKPGIYVGDSFILDDLDQFPSFSDHCPVGCTI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87765.20247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA4_ECTSI1.960e-7373.40DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S4D5F5_HETAK1.220e-1957.53DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S0DQ90_9EUKA9.020e-1954.95DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7R9Y652_MICPS5.250e-1856.25DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7S3W719_EMIHU3.780e-1733.16DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
W7TRL7_9STRA3.510e-1652.69DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A7J6P2G4_PEROL9.620e-1654.79DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A5J4Z455_PORPP2.340e-1534.24DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
C5KUG1_PERM53.950e-1550.68Ap endonuclease, putative n=1 Tax=Perkinsus marinu... [more]
A0A7S3PFH3_9STRA5.920e-1550.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87765contigEcto-sp13_S_contig87765:3..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score236.5
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D8LJA4
Preferred nameARP
Model size564
KEGG rclassRC00064,RC00090,RC00162
KEGG koko:K01142,ko:K01930,ko:K10771
KEGG ReactionR00942,R02237,R04241
KEGG Pathwayko00790,ko01100,ko01523,ko03410,map00790,map01100,map01523,map03410
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004528,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006289,GO:0006355,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008081,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009295,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0016796,GO:0016895,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0033554,GO:0033683,GO:0034641,GO:0042578,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.double-stranded DNA 3'-5' exodeoxyribonuclease activity
EggNOG OGsCOG0708@1,KOG1294@2759
EC3.1.11.2,4.2.99.18,6.3.2.17
Cds size558
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.8800583-UTR-Ecto-sp13_S_contig87765:2..81681464149.8800583-UTR-Ecto-sp13_S_contig87765:2..8Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig87765 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.8936803-CDS-Ecto-sp13_S_contig87765:8..5661681464149.8936803-CDS-Ecto-sp13_S_contig87765:8..566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87765 9..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87765.20247.1prot_Ecto-sp13_S_contig87765.20247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87765 9..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87765.20247.1

>prot_Ecto-sp13_S_contig87765.20247.1 ID=prot_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
MNVAHEDLDFYNPEEKRTRKAAGTTPEERSSFAVNLLGCHPPPSCAAAVA
VDTIPRPNDKKSRGSSSSPLPTSAADDSFRSSAASSGGGEEAGDGGCDGN
KAEGSGCSLVDTFREKHPKATGVFSYWSVRARNRPVNRGMRLDYCLASRG
LVGGDGVHDAFVLDMDTVGVSDHCPVGLVLQLGDHY
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mRNA from alignment at Ecto-sp13_S_contig87765:3..566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87765.20247.1 ID=mRNA_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87765:3..566+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACATGAACGTCGCCCACGAGGACTTGGACTTCTACAACCCGGAGGA AAAACGCACGAGGAAGGCCGCGGGCACCACTCCGGAGGAGCGCAGCTCCT TCGCCGTCAACCTGCTCGGCTGCCACCCCCCACCTTCATGCGCCGCCGCC GTCGCCGTGGACACAATCCCTCGCCCGAACGACAAGAAGAGCAGAGGTTC CTCCTCTTCACCACTGCCTACGTCTGCGGCGGACGACTCCTTCCGTTCTT CGGCTGCTTCGAGCGGAGGGGGGGAGGAGGCAGGCGACGGCGGCTGCGAT GGAAACAAGGCAGAGGGTAGTGGCTGTTCCTTGGTGGACACGTTCCGAGA GAAGCACCCGAAAGCCACGGGCGTGTTCAGCTACTGGTCGGTCAGGGCGA GGAACCGGCCGGTTAACCGAGGGATGCGGCTGGACTACTGCCTGGCGTCG CGGGGGCTCGTCGGTGGGGACGGCGTGCACGACGCGTTTGTGCTGGACAT GGACACTGTGGGCGTGAGCGATCACTGCCCTGTCGGGCTTGTGCTGCAAT TGGGCGACCACTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87765:3..566+

>mRNA_Ecto-sp13_S_contig87765.20247.1 ID=mRNA_Ecto-sp13_S_contig87765.20247.1|Name=mRNA_Ecto-sp13_S_contig87765.20247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87765:3..566+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGTCGCCCACGAGGACTTGGACTTCTACAACCCGGAGGAAAAACG
CACGAGGAAGGCCGCGGGCACCACTCCGGAGGAGCGCAGCTCCTTCGCCG
TCAACCTGCTCGGCTGCCACCCCCCACCTTCATGCGCCGCCGCCGTCGCC
GTGGACACAATCCCTCGCCCGAACGACAAGAAGAGCAGAGGTTCCTCCTC
TTCACCACTGCCTACGTCTGCGGCGGACGACTCCTTCCGTTCTTCGGCTG
CTTCGAGCGGAGGGGGGGAGGAGGCAGGCGACGGCGGCTGCGATGGAAAC
AAGGCAGAGGGTAGTGGCTGTTCCTTGGTGGACACGTTCCGAGAGAAGCA
CCCGAAAGCCACGGGCGTGTTCAGCTACTGGTCGGTCAGGGCGAGGAACC
GGCCGGTTAACCGAGGGATGCGGCTGGACTACTGCCTGGCGTCGCGGGGG
CTCGTCGGTGGGGACGGCGTGCACGACGCGTTTGTGCTGGACATGGACAC
TGTGGGCGTGAGCGATCACTGCCCTGTCGGGCTTGTGCTGCAATTGGGCG
ACCACTAC
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