mRNA_Ecto-sp13_S_contig8775.20244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8775.20244.1
Unique NamemRNA_Ecto-sp13_S_contig8775.20244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8775.20244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8775contigEcto-sp13_S_contig8775:848..1474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size617
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.5433176-UTR-Ecto-sp13_S_contig8775:847..9371681464149.5433176-UTR-Ecto-sp13_S_contig8775:847..937Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8775 848..937 +
1681464149.5588884-UTR-Ecto-sp13_S_contig8775:947..10361681464149.5588884-UTR-Ecto-sp13_S_contig8775:947..1036Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8775 948..1036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.5740976-CDS-Ecto-sp13_S_contig8775:1036..14741681464149.5740976-CDS-Ecto-sp13_S_contig8775:1036..1474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8775 1037..1474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8775.20244.1prot_Ecto-sp13_S_contig8775.20244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8775 1037..1474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8775.20244.1

>prot_Ecto-sp13_S_contig8775.20244.1 ID=prot_Ecto-sp13_S_contig8775.20244.1|Name=mRNA_Ecto-sp13_S_contig8775.20244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MCSIIVSSNEKREGVEVAHCCLLLLRLLPKGTLVKHRSVLFLRHARQARR
EILHRAGTIMLAGNSHLRVYRERRAEATQRSTIILPPRMLCFYLLCASTN
TPSNKSGTRRVGSDPKPAGRRGTSGCVWYTPCRPAIPRPSRAYQT*
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mRNA from alignment at Ecto-sp13_S_contig8775:848..1474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8775.20244.1 ID=mRNA_Ecto-sp13_S_contig8775.20244.1|Name=mRNA_Ecto-sp13_S_contig8775.20244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8775:848..1474+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGCCCATCCGATTTCCCGACTTGCAAGGCACGTACGCGTGTGGGAGCT
GCCTCCAGGGCTCATCGTTCACGGTCGGTTCCGCAAGAACGTTCCGGGAG
TTGCGAGCGCCTGAGCGCTATACACGGCGGTGGAGCCTACTTCCTGCTGC
GCGTGCTCGAACCTAGGCAAAGCTTGTTCTCGAGGAGGTATGTGTAGTAT
CATAGTTTCAAGCAACGAGAAACGAGAGGGCGTGGAGGTTGCGCACTGTT
GTCTGCTGTTGTTGCGATTGTTGCCAAAAGGAACGTTGGTAAAACATCGA
AGCGTGCTATTTCTCCGCCACGCCCGCCAAGCCCGCCGGGAGATTCTCCA
CCGCGCAGGGACGATCATGTTGGCAGGCAACTCTCACCTGCGGGTGTACA
GAGAGAGGCGAGCAGAGGCAACACAGCGAAGCACAATCATTCTGCCACCA
CGCATGCTTTGTTTCTATCTTTTATGCGCATCAACCAACACACCAAGCAA
TAAAAGCGGAACACGTCGTGTCGGATCGGATCCCAAGCCTGCAGGTAGGA
GGGGGACGAGCGGCTGTGTGTGGTATACGCCGTGCAGGCCTGCCATACCA
CGCCCCTCACGAGCGTACCAAACTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8775:848..1474+

>mRNA_Ecto-sp13_S_contig8775.20244.1 ID=mRNA_Ecto-sp13_S_contig8775.20244.1|Name=mRNA_Ecto-sp13_S_contig8775.20244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8775:848..1474+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTAGTATCATAGTTTCAAGCAACGAGAAACGAGAGGGCGTGGAGGT
TGCGCACTGTTGTCTGCTGTTGTTGCGATTGTTGCCAAAAGGAACGTTGG
TAAAACATCGAAGCGTGCTATTTCTCCGCCACGCCCGCCAAGCCCGCCGG
GAGATTCTCCACCGCGCAGGGACGATCATGTTGGCAGGCAACTCTCACCT
GCGGGTGTACAGAGAGAGGCGAGCAGAGGCAACACAGCGAAGCACAATCA
TTCTGCCACCACGCATGCTTTGTTTCTATCTTTTATGCGCATCAACCAAC
ACACCAAGCAATAAAAGCGGAACACGTCGTGTCGGATCGGATCCCAAGCC
TGCAGGTAGGAGGGGGACGAGCGGCTGTGTGTGGTATACGCCGTGCAGGC
CTGCCATACCACGCCCCTCACGAGCGTACCAAACTTAA
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