mRNA_Ecto-sp13_S_contig87741.20243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87741.20243.1
Unique NamemRNA_Ecto-sp13_S_contig87741.20243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: UPI00142233B0 (paraquat-inducible protein A n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00142233B0)

HSP 1 Score: 124 bits (311), Expect = 3.460e-34
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1
Query:    1 PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDY+LFLVI
Sbjct:   36 PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYVLFLVI 103          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: UPI001872BB96 (paraquat-inducible protein A n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872BB96)

HSP 1 Score: 104 bits (260), Expect = 7.190e-27
Identity = 54/68 (79.41%), Postives = 63/68 (92.65%), Query Frame = 1
Query:    1 PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            P TLAA SRGPDRFLGLL+LA+AAALLAGWLLPVMTV TL++F DEVSI+TGAFRLL+SGDY +F++I
Sbjct:   11 PGTLAADSRGPDRFLGLLLLASAAALLAGWLLPVMTVHTLVIFDDEVSILTGAFRLLESGDYAIFILI 78          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A843RKJ7_9PROT (Paraquat-inducible protein A n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RKJ7_9PROT)

HSP 1 Score: 101 bits (252), Expect = 2.420e-25
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            P TLAA SRG DR LGLL+LAAAAALLAGWLLPVMTVRTLLVFYDEVSI+TGA RLL++GD+ LF +I
Sbjct:   36 PGTLAADSRGLDRLLGLLLLAAAAALLAGWLLPVMTVRTLLVFYDEVSILTGALRLLETGDFALFALI 103          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A7C7PS52_9PROT (Paraquat-inducible protein A n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PS52_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 6.560e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query:   34 DRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            DR+LGLLILAAA ALLAGWLLPVMTVRTLLVFYDEVSI+TGA+RLL+ GDYL+FLVI
Sbjct:    2 DRYLGLLILAAAVALLAGWLLPVMTVRTLLVFYDEVSILTGAYRLLEGGDYLIFLVI 58          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A545TX39_9PROT (Paraquat-inducible protein A n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TX39_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.520e-15
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 1
Query:   34 DRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            DR LGLL+L +AA L+AGW +PVMTV+TL VFY+EVSI+ GAF +L+SGDYLL  +I
Sbjct:   26 DRLLGLLLLVSAALLVAGWFMPVMTVQTLFVFYNEVSIIEGAFSMLESGDYLLVAII 82          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A2S6R5V9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R5V9_9PROT)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    7 TLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLF 195
            +LAA +RG DR LG+ ++AAAA L+ GWL+P+MTVR L+ F D +S++     LL+   +LLF
Sbjct:   18 SLAAQARGADRLLGVALIAAAALLVVGWLVPIMTVRRLIFFEDRISVLQALEALLERQQFLLF 80          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A2S6R2W9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6R2W9_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 9.720e-9
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    7 TLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            +LAA ++G D+ LG ++  AA  LLAGW +P+MTVR L  F D +S++     LL  G YLLF V+
Sbjct:   18 SLAAHAKGADKLLGGVLFVAAGLLLAGWFIPIMTVRRLFFFEDRISVLQALDALLARGQYLLFSVL 83          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A2E6QK89_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK89_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.490e-7
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGD 183
            P ++AA + G DR LGL ++A++  L+ GW  P+MTV+ L +F DE+S++ G F L D GD
Sbjct:   90 PRSIAAHAVGGDRLLGLGLIASSVLLVVGWTAPIMTVKRLFLFGDELSVLQGLFVLADHGD 150          
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Match: A0A3D3VCA0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D3VCA0_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 1.720e-6
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   22 SRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIMTGAFRLLDSGDYLLFLVI 204
            ++G DR LGL+++AA  AL+AG  LP +TVR+LL F  E S++   F  LD+GD+ LF ++
Sbjct:   13 AQGFDRVLGLVLIAALVALVAGLFLPAITVRSLL-FSQEFSLVESVFAFLDAGDWFLFAIV 72          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87741.20243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI00142233B03.460e-3498.53paraquat-inducible protein A n=1 Tax=Pelagibius li... [more]
UPI001872BB967.190e-2779.41paraquat-inducible protein A n=1 Tax=Pelagibius sp... [more]
A0A843RKJ7_9PROT2.420e-2580.88Paraquat-inducible protein A n=1 Tax=Kiloniellacea... [more]
A0A7C7PS52_9PROT6.560e-2487.72Paraquat-inducible protein A n=1 Tax=Kiloniellacea... [more]
A0A545TX39_9PROT1.520e-1566.67Paraquat-inducible protein A n=1 Tax=Denitrobaculu... [more]
A0A2S6R5V9_9PROT1.010e-949.21Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2S6R2W9_9PROT9.720e-946.97Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E6QK89_9PROT1.490e-745.90Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A3D3VCA0_9PROT1.720e-647.54Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87741contigEcto-sp13_S_contig87741:1..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categorysignal peptide
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.5030951-CDS-Ecto-sp13_S_contig87741:0..2041681464149.5030951-CDS-Ecto-sp13_S_contig87741:0..204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87741 1..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87741.20243.1prot_Ecto-sp13_S_contig87741.20243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87741 1..204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87741.20243.1

>prot_Ecto-sp13_S_contig87741.20243.1 ID=prot_Ecto-sp13_S_contig87741.20243.1|Name=mRNA_Ecto-sp13_S_contig87741.20243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
PATLAAGSRGPDRFLGLLILAAAAALLAGWLLPVMTVRTLLVFYDEVSIM
TGAFRLLDSGDYLLFLVI
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mRNA from alignment at Ecto-sp13_S_contig87741:1..204-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87741.20243.1 ID=mRNA_Ecto-sp13_S_contig87741.20243.1|Name=mRNA_Ecto-sp13_S_contig87741.20243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87741:1..204- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCACCCTGGCCGCCGGCAGCCGCGGGCCCGACCGTTTTCTGGGCCT GCTCATCCTCGCCGCCGCCGCCGCCCTGCTGGCCGGCTGGCTGCTGCCGG TCATGACGGTTCGTACACTGCTGGTTTTCTACGACGAGGTTTCCATCATG ACCGGCGCCTTTCGGCTGCTGGACAGTGGCGACTACCTGCTTTTTCTGGT GATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87741:1..204-

>mRNA_Ecto-sp13_S_contig87741.20243.1 ID=mRNA_Ecto-sp13_S_contig87741.20243.1|Name=mRNA_Ecto-sp13_S_contig87741.20243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87741:1..204- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCACCCTGGCCGCCGGCAGCCGCGGGCCCGACCGTTTTCTGGGCCT
GCTCATCCTCGCCGCCGCCGCCGCCCTGCTGGCCGGCTGGCTGCTGCCGG
TCATGACGGTTCGTACACTGCTGGTTTTCTACGACGAGGTTTCCATCATG
ACCGGCGCCTTTCGGCTGCTGGACAGTGGCGACTACCTGCTTTTTCTGGT
GATC
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