mRNA_Ecto-sp13_S_contig8756.20230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8756.20230.1
Unique NamemRNA_Ecto-sp13_S_contig8756.20230.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8756.20230.1 vs. uniprot
Match: D7FUN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN7_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.020e-96
Identity = 165/175 (94.29%), Postives = 168/175 (96.00%), Query Frame = 2 
Query:   38 EQESKEVSKIHGRMSKDLARAADRNRGSKQSACPFALVVKVLSKQDAEGLGYIKASEFKRSLETLGFGGLSAAEKSLLVRRFDPVEEGTITYEVFAAWLSSGLDPDRLTAKLGRLLGQLTGRQTRSGGEKKKGETADNKGARDRAIKKRLPGGVRGLFEEFDEDGAGAVSRHDMK 562
            EQESKEVSKIHGRMSKDLARAADR+RGSKQSACPFALVVK LSKQDAEGLGYIKAS+FKRSLE LGFGGLSAAEKSLLVRRFDPVEEGTITYEVFAAWLSSGLDPDRLT KLGRLLGQLTGRQTRSGGEKKKG+TADN GARDRAIKKRLPGGVRGLFE FDEDG G VSRHDMK
Sbjct:  324 EQESKEVSKIHGRMSKDLARAADRSRGSKQSACPFALVVKALSKQDAEGLGYIKASDFKRSLERLGFGGLSAAEKSLLVRRFDPVEEGTITYEVFAAWLSSGLDPDRLTVKLGRLLGQLTGRQTRSGGEKKKGKTADNNGARDRAIKKRLPGGVRGLFEGFDEDGVGTVSRHDMK 498
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BLAST of mRNA_Ecto-sp13_S_contig8756.20230.1 vs. uniprot
Match: A0A835YKB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.310e-12
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 2 
Query:   56 VSKIHGRMSKDLARAADRNRGSKQSACPFALVVKVLSKQDAEGLGYIKASEFKRSLETLGFGGLSAAEKSLLVRRFDPVEEGTITYEVFAAWLSSGLDPDRLTAKLGRLLGQLTGR 403
            ++++  R++ DLA   D+ R +++   P  +  +   K +A G G + +++F+R  E L  G L+  + + L+ RFDP EEG ++Y+ FA W + G D  R   KLGR L  L  R
Sbjct:    1 MAELQARIAVDLA---DKARRAERP--PLEVARRAFRKFNAAGSGVVGSADFRRGAERLRCGALTPGDIAALLSRFDPAEEGKVSYDAFAVWAAGGCDAARALEKLGRCLALLRAR 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8756.20230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUN7_ECTSI1.020e-9694.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKB5_9STRA9.310e-1233.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8756contigEcto-sp13_S_contig8756:4661..6422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score319.3
Seed ortholog evalue1.1e-84
Seed eggNOG ortholog2880.D7FUN7
Preferred nameMLC2
Model size564
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
Exons3
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Cds size531
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.5022519-UTR-Ecto-sp13_S_contig8756:4660..46911681464148.5022519-UTR-Ecto-sp13_S_contig8756:4660..4691Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8756 4661..4691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.513724-CDS-Ecto-sp13_S_contig8756:4691..48591681464148.513724-CDS-Ecto-sp13_S_contig8756:4691..4859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 4692..4859 +
1681464148.5243435-CDS-Ecto-sp13_S_contig8756:5862..59671681464148.5243435-CDS-Ecto-sp13_S_contig8756:5862..5967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 5863..5967 +
1681464148.5420225-CDS-Ecto-sp13_S_contig8756:6164..64221681464148.5420225-CDS-Ecto-sp13_S_contig8756:6164..6422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 6165..6422 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8756.20230.1prot_Ecto-sp13_S_contig8756.20230.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8756 4692..6422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8756.20230.1

>prot_Ecto-sp13_S_contig8756.20230.1 ID=prot_Ecto-sp13_S_contig8756.20230.1|Name=mRNA_Ecto-sp13_S_contig8756.20230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MREQESKEVSKIHGRMSKDLARAADRNRGSKQSACPFALVVKVLSKQDAE
GLGYIKASEFKRSLETLGFGGLSAAEKSLLVRRFDPVEEGTITYEVFAAW
LSSGLDPDRLTAKLGRLLGQLTGRQTRSGGEKKKGETADNKGARDRAIKK
RLPGGVRGLFEEFDEDGAGAVSRHDMK
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mRNA from alignment at Ecto-sp13_S_contig8756:4661..6422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8756.20230.1 ID=mRNA_Ecto-sp13_S_contig8756.20230.1|Name=mRNA_Ecto-sp13_S_contig8756.20230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8756:4661..6422+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGTCATTCTCGTGCCCCTTTTCGGCGCGGCATGCGTGAACAGGAATCTA
AGGAGGTGTCCAAGATCCACGGGCGGATGTCGAAGGACTTGGCGCGGGCG
GCAGACCGCAACAGGGGCAGCAAGCAATCAGCCTGCCCCTTTGCTTTGGT
CGTCAAAGTCTTGTCCAAACAGGATGCGGAAGGGCTGGGTTACATCAAGG
TGAGTTGAATTAGAGTACGAAGACTAGGGTACTGCAGTTGCCAACAGTGT
TTCGAACGGGTTTTCGGCGTTTGACCGAAATTGATCGACGGCCGAGCAAC
TGAGAGGCCTTGATGCGTTTGGGTCTCCGGATTCGTTGCGGTCTTCCATA
GTACTGTCTCGGCTAACGCCTCAGCGCGCCGCGGTGCTTGCCATCGAAAA
CAACTGCAGATCGGCGTAAAGCTCATGAATATTATATATACAGCCACCCC
CCCTCTCGGCGTTTGTCATCAGGGTTGGGTTTTCGTCGCTTGGCGGCGAT
GTTGTAAAACAAGCCGCCCCCAGTATTTCTCATCAGGGTTGGGTTTTCGT
CGCTTGGCAGCGATGTTGTGAAACAAGCCGATTACTTTGTGAACTTGGCA
ACCAGGTTACCGTTTTTGTTTTTGCCTTTGGGAATGTTTTTTTTGCGGTG
ACCATGAATGGTGGTGGAGAAGATTATGTTGTGCGGGGTCGAGAACCCTC
ACTCCGCGCAAAGGAGATAATCGCACCACGTTGTCTTAAATTGGTCAAGC
ACCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGC
ACCAGAAAATGAATTATGCGAGCTTGGTCCGGTGAGAACCCGGCGTGCTC
CGTTCCGGGTTTGAGGGATGCGAGGTCAATGGTCGAACGACTACGGCATG
CACGACTTTGAGTACACCCCCGCCCCCCCCTCCTTCGAGGCGTTGATACC
GGGCCTCCCGGGGGTGACGCAAGATGACAAGCCGAACGTTTTGTCATGGA
TTCTTCCCGATAGGTAGTGCTCGTTTCCGGACAAAATATTGCCGTGCATC
ACTTGAGCCTGCTTGGGAGGACGGACAACTTGCGAGATGCGTCTGAACGA
GCCAGCTCGTTCACGAGCCAGCTCGTTCAGTATCAACTTCAGTAGTTGCT
GCCACTCGCGCGTTAGGCACCGCTTTCTCTTACCTGTGCAACCGCCCCAC
AGGCGTCGGAGTTCAAGCGAAGCCTGGAAACACTTGGGTTCGGCGGGCTA
AGCGCCGCGGAGAAGTCGCTTCTCGTGAGGCGTTTCGACCCGGTCGAAGA
GGGCACGGTGAGTGCCATGGCAACCCTTTTTTTGTCGCTCACTTCGTGCT
CTTATTTTTCTCTGTTGTTTTCCAGAGCGAGGGTTTCGAGGCAGCGGACT
TTCGCACCGTTTTCATGTCGCGCTGCCGACGGGCACTCCTGTCTGGCCGT
CCTCAAGACAATGCAGTGAATGAAACACATTTTTTGCACTGAACGGAACG
ACAGATCACCTATGAGGTGTTTGCGGCTTGGCTGTCGTCCGGTCTCGACC
CGGATCGCCTCACGGCCAAGCTTGGCCGGCTCCTGGGACAGCTGACCGGC
CGACAGACTCGCTCTGGCGGGGAGAAGAAGAAGGGGGAGACCGCGGACAA
CAAGGGGGCGAGGGACAGAGCCATCAAGAAGCGACTGCCGGGCGGCGTGC
GAGGGCTGTTCGAGGAGTTCGACGAGGACGGCGCGGGAGCGGTCAGCCGG
CATGACATGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8756:4661..6422+

>mRNA_Ecto-sp13_S_contig8756.20230.1 ID=mRNA_Ecto-sp13_S_contig8756.20230.1|Name=mRNA_Ecto-sp13_S_contig8756.20230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8756:4661..6422+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGAACAGGAATCTAAGGAGGTGTCCAAGATCCACGGGCGGATGTC
GAAGGACTTGGCGCGGGCGGCAGACCGCAACAGGGGCAGCAAGCAATCAG
CCTGCCCCTTTGCTTTGGTCGTCAAAGTCTTGTCCAAACAGGATGCGGAA
GGGCTGGGTTACATCAAGGCGTCGGAGTTCAAGCGAAGCCTGGAAACACT
TGGGTTCGGCGGGCTAAGCGCCGCGGAGAAGTCGCTTCTCGTGAGGCGTT
TCGACCCGGTCGAAGAGGGCACGATCACCTATGAGGTGTTTGCGGCTTGG
CTGTCGTCCGGTCTCGACCCGGATCGCCTCACGGCCAAGCTTGGCCGGCT
CCTGGGACAGCTGACCGGCCGACAGACTCGCTCTGGCGGGGAGAAGAAGA
AGGGGGAGACCGCGGACAACAAGGGGGCGAGGGACAGAGCCATCAAGAAG
CGACTGCCGGGCGGCGTGCGAGGGCTGTTCGAGGAGTTCGACGAGGACGG
CGCGGGAGCGGTCAGCCGGCATGACATGAAG
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