mRNA_Ecto-sp13_S_contig8756.20229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8756.20229.1
Unique NamemRNA_Ecto-sp13_S_contig8756.20229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8756.20229.1 vs. uniprot
Match: D7FUN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN7_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.340e-89
Identity = 182/216 (84.26%), Postives = 190/216 (87.96%), Query Frame = 1 
Query:    1 ALAAKYHGDYEGFLATLADSPERLPEGAVSEGSDDSGSDTERGPKERKSWIKSIGRRRGGSNTNSRNRSRXXXXXXXXXXXXXXXXXXXXXXXXRPLTSGSSEDGEEDEDKAEDEYDGLLLGMRARVALRDAFERACSATAGVKDIFCSAAGGGHSRSNSDRDVDTASGKGTLLDREQTRRFLRRLKLDVPEDDRAALLDALAPPPGTSVGDGDDG 648
            ALAAK+HGDYEGFLATLAD P RLPEGAVSE SDDSGSDT+RGPK  KSWIK+IGRRRGGSNTNS     XXXXXXXXXXXXXXX         RPLTSGSSEDGEE EDKAEDEYDG+LLG RARVALRDAFERACSAT GV+DIFCSAAGGGHSRSN  RDVDTASG+G LLDREQTRRFLRRLKLD P+DDRAALLDALAPPPGTSVGDG+DG
Sbjct:   68 ALAAKHHGDYEGFLATLAD-PTRLPEGAVSERSDDSGSDTDRGPKG-KSWIKNIGRRRGGSNTNSXXXXXXXXXXXXXXXXXXXXEGGSSDDGDRPLTSGSSEDGEEGEDKAEDEYDGILLGKRARVALRDAFERACSATGGVQDIFCSAAGGGHSRSNGGRDVDTASGQGALLDREQTRRFLRRLKLDAPDDDRAALLDALAPPPGTSVGDGEDG 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8756.20229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUN7_ECTSI2.340e-8984.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8756contigEcto-sp13_S_contig8756:1568..3980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score300.8
Seed ortholog evalue5e-79
Seed eggNOG ortholog2880.D7FUN7
Preferred nameMLC2
Model size649
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
Exons4
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
Cds size648
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464148.4402297-CDS-Ecto-sp13_S_contig8756:1567..16451681464148.4402297-CDS-Ecto-sp13_S_contig8756:1567..1645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 1568..1645 +
1681464148.452197-CDS-Ecto-sp13_S_contig8756:2517..28161681464148.452197-CDS-Ecto-sp13_S_contig8756:2517..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 2518..2816 +
1681464148.4611588-CDS-Ecto-sp13_S_contig8756:3151..33081681464148.4611588-CDS-Ecto-sp13_S_contig8756:3151..3308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 3152..3308 +
1681464148.4699118-CDS-Ecto-sp13_S_contig8756:3866..39801681464148.4699118-CDS-Ecto-sp13_S_contig8756:3866..3980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8756 3867..3980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8756.20229.1prot_Ecto-sp13_S_contig8756.20229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8756 1568..3980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8756.20229.1

>prot_Ecto-sp13_S_contig8756.20229.1 ID=prot_Ecto-sp13_S_contig8756.20229.1|Name=mRNA_Ecto-sp13_S_contig8756.20229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
ALAAKYHGDYEGFLATLADSPERLPEGAVSEGSDDSGSDTERGPKERKSW
IKSIGRRRGGSNTNSRNRSRKSSRRNGRSGRGSGGEGGSSDDSDRPLTSG
SSEDGEEDEDKAEDEYDGLLLGMRARVALRDAFERACSATAGVKDIFCSA
AGGGHSRSNSDRDVDTASGKGTLLDREQTRRFLRRLKLDVPEDDRAALLD
ALAPPPGTSVGDGDDG
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mRNA from alignment at Ecto-sp13_S_contig8756:1568..3980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8756.20229.1 ID=mRNA_Ecto-sp13_S_contig8756.20229.1|Name=mRNA_Ecto-sp13_S_contig8756.20229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2413bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8756:1568..3980+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTCGCCGCCAAGTACCACGGGGACTACGAGGGTTTCTTGGCCACGCT
AGCAGATTCTCCAGAACGCTTGCCGGAGGTGAGGACAGAACTAGGGCGAG
GAGCTATTGTCACACAGCAGTGCCTTAGGCGGCACAAAATGTATCACACC
CCCTGGACCGGTTTTCAGCCCGATTTACTCCACGGCAGCATGAGTGGCAG
TGCCGAAAATTATGGCGTTGGAAGCGTATTGTCGAGATCGTTCCGATGAC
AGGTCCTTTGATTTTGGCACCCTCTCTGTCGTGAAGGTAGTCGAGCTTTG
AAAATTGGTCCAGGGGGTGAGGTTTCTTGCGTTACCTACGGTAGATACGT
GTCCCCGCGCCGGGGCCGAGATCAACGATCGCTCTCACCAACCGACGTTG
CAGGAAGGAGCGGTAGACAGGTGGCGTTGCATAATGCGACATGTGGCGTG
CAGCAGAATGGTGGGGGGTACGGGTAGTCTGAAACAGAAGAGGTCTATCT
TCCTCAGTCGCCGAGCAATGCACGGTCAAGACCGACGTAAACCGCCCCTG
ACCAAGGCCGCGTAGAATCACAACTCCCCTCATCTTGCCAAGAGCCGAAA
AAATTTTCGTGCTAGACCCGGGAGCTTATACTACTGGGCCGATGGCACAC
ACAATACCCGTGCTCGTGTACACGTCTTCATGAAGCGTTGCCTGCGTCAT
ACCCTTGAAGGTTTTCCCCCGCCGAATGAGGCTTTGTTGTCGTTGACCGG
GAGAGAGAGCGTTGTCCGTCCGACAACCCCGACGTCAGTGCATGCAGTGG
TTTTTGTGACTGCAGGTCGTGCTGACCGATTAATTTCTAGCCATCCTCAA
CGTGGACCACCCCAGCCCCCAAGGATACTCTGTGCAAACCGGTGCTCGTA
CATTCTACTGTTCAGCGAAGACTCTGCTTTCTTTTTCTCTTATCCAGCAG
GGTGCAGTCTCCGAGGGGTCGGACGACAGCGGAAGCGATACCGAGCGAGG
GCCGAAAGAGAGGAAAAGTTGGATTAAGAGCATAGGGCGGCGAAGGGGCG
GCAGCAACACAAACAGCAGAAACAGGAGCAGGAAGAGCAGCAGAAGAAAC
GGTAGAAGTGGCCGTGGGTCCGGCGGCGAAGGGGGGTCGTCTGATGACAG
CGACCGGCCGCTCACATCTGGATCTAGCGAGGATGGGGAGGAAGACGAGG
ACAAAGCGGAGGATGAATACGATGGATTACTGTTGGGGATGAGGGCCAGG
TGCGTGACGGGCAAGAAAACGGTGGAATACAATGACGCGTAAAATCGAGC
CACCCAATGGATGCGATGTTGTTGTTCCTTTCCTAGTGTTTCGGAGGTAG
ACTGCTGTGGAACATTGCGAAACCGTTCTTTTGTGGCAAACGGGAAGTTT
CGAGAACGGCGACTAAGACCTCCGCGCAGTAGAGAGTTCCAGCGCGAACC
AGAATCTCTCGTAGTCAGCTTTCTGCGAGCGAATGGTGCGTGGCCCAGAC
AAAACTACGTATTCCACCTTGACCCATTACGTCCGCAACCACCTTCCTCT
ACCGTACCAAAAAAACAACGGTGCCCATATTCAGGGTGGCTCTGCGCGAT
GCCTTCGAGCGTGCGTGTAGCGCCACCGCGGGCGTGAAGGACATTTTTTG
CTCGGCGGCCGGGGGAGGGCATAGCAGGAGCAACAGTGACAGGGACGTGG
ACACGGCGAGCGGCAAAGGGACGCTACTCGATCGGGAGCAGGTACACGCA
GCAGCCCAAGACACCTCCTCGACACTCTTCTTTGTTGATTGCTCATGGCG
CCATGGGTTCTCCAATATCCGATTGAAAGCTACGCTTGGGTAGATACAGG
AGGCGCACCGTTCGGAATAGAACCATGCGGTCCGACTCGATCGAGCAGTT
GCACATAAGGAATTTCTCATGTGGTTCTCACGCTGCTCACGCTGCCGTGG
GGTTTCGAACTCATGGAGTATTCGATTGATTTTGTGACCACGGGCGAGGA
AATGGGAAATGCCTGAGCATCCAAGGCAAGACCGCACAAGTTTGTATACC
ATGATTTGCTAACGCGCCGGACGGGAGAGAACATCGTTGATCTACATATG
TAGACGTGTGTGATGAACTGTTGGACACGATACAGGGCACAAGCCAAGCA
CGCGCCTCTCAGTCAATCAAAACCTGTCTCTGCGTATCCTTGTACAACGA
ACAACGTTGGCAAGACCAACGTCTCACTGACATGGTAGCCAATTTTGGTT
CCCTCCCTTTGGCGCCGCTACCATCGAAAAATCAAACCGAAAACCACAGA
CACGGCGCTTCCTGCGGAGGCTCAAGCTTGACGTACCTGAAGACGACCGT
GCTGCTCTCCTCGACGCACTCGCGCCCCCCCCTGGTACGTCCGTGGGCGA
TGGCGACGATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8756:1568..3980+

>mRNA_Ecto-sp13_S_contig8756.20229.1 ID=mRNA_Ecto-sp13_S_contig8756.20229.1|Name=mRNA_Ecto-sp13_S_contig8756.20229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8756:1568..3980+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTCGCCGCCAAGTACCACGGGGACTACGAGGGTTTCTTGGCCACGCT
AGCAGATTCTCCAGAACGCTTGCCGGAGGGTGCAGTCTCCGAGGGGTCGG
ACGACAGCGGAAGCGATACCGAGCGAGGGCCGAAAGAGAGGAAAAGTTGG
ATTAAGAGCATAGGGCGGCGAAGGGGCGGCAGCAACACAAACAGCAGAAA
CAGGAGCAGGAAGAGCAGCAGAAGAAACGGTAGAAGTGGCCGTGGGTCCG
GCGGCGAAGGGGGGTCGTCTGATGACAGCGACCGGCCGCTCACATCTGGA
TCTAGCGAGGATGGGGAGGAAGACGAGGACAAAGCGGAGGATGAATACGA
TGGATTACTGTTGGGGATGAGGGCCAGGGTGGCTCTGCGCGATGCCTTCG
AGCGTGCGTGTAGCGCCACCGCGGGCGTGAAGGACATTTTTTGCTCGGCG
GCCGGGGGAGGGCATAGCAGGAGCAACAGTGACAGGGACGTGGACACGGC
GAGCGGCAAAGGGACGCTACTCGATCGGGAGCAGACACGGCGCTTCCTGC
GGAGGCTCAAGCTTGACGTACCTGAAGACGACCGTGCTGCTCTCCTCGAC
GCACTCGCGCCCCCCCCTGGTACGTCCGTGGGCGATGGCGACGATGGC
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