mRNA_Ecto-sp13_S_contig8747.20220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8747.20220.1
Unique NamemRNA_Ecto-sp13_S_contig8747.20220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8747.20220.1 vs. uniprot
Match: D7FWR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR4_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 1.360e-153
Identity = 310/371 (83.56%), Postives = 317/371 (85.44%), Query Frame = 1 
Query:    1 VTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVTRCEERLEVMNAVVEQERADRESRETMHKNELQLTEELINGRKDNHTWSKKVRQLKDQEVRYDRIVAENERTVATLKQWLPNFETYGDSVLAKVLPPRPLPPPTQQQAAVVSAPPLSPQEALERDLNRIHAAGLWRVRRDXXXXXXXSISDSSMVXXXXXXXXXXXXXXXXXXSIAGSGDLSNRGGRGTSPMTVRTTVIGRSGTAQSGGXXXXXSQSPKGISTAIAXXXXXXXXXXXXXXXXXXXXXXXXAGAV----SKTGVVSKRSLADSKMMDVLVQQGREAALRAEALRNETKEAEERAAKAKADAREHARDLLQ-ACGKAEGVILSLLADPA 1098
            VTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTV RCEERLEVMNAVVEQERADRESRET+HKNELQLTEELINGR     WSKKVRQLKDQEVRY  IVAENERTVATLKQWLPNFETYGDSVLAKVLPP PL PPTQQQAAVVSAPPLSPQEALERDLNRIHAAGLW VRRDXXXXXXXSISDSSMV                    AGSGDLSNRGGRGTSPMTVRT V GRSGTA+SG XXXXX      +STAIA XXXXXXXXXXXXXXXXXXXXXXX        S+TGV  KRSLAD KMMDVLVQQGREAALRAEALRNETKEAEERA+K KADA+EHARDLLQ ACG+AEGVILSLLADPA
Sbjct:  163 VTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETIHKNELQLTEELINGR-----WSKKVRQLKDQEVRYGSIVAENERTVATLKQWLPNFETYGDSVLAKVLPPLPLSPPTQQQAAVVSAPPLSPQEALERDLNRIHAAGLWCVRRDXXXXXXXSISDSSMVERSSNSDRS-----------AGSGDLSNRGGRGTSPMTVRTPVNGRSGTAESGXXXXXXXXXXXRMSTAIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTGVAGKRSLADRKMMDVLVQQGREAALRAEALRNETKEAEERASKVKADAKEHARDLLQQACGRAEGVILSLLADPA 517
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BLAST of mRNA_Ecto-sp13_S_contig8747.20220.1 vs. uniprot
Match: A0A835Z723_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z723_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.400e-24
Identity = 69/168 (41.07%), Postives = 99/168 (58.93%), Query Frame = 1 
Query:    1 VTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVTRCEERLEVMNAVVEQERADRESRETMHKNELQLTEELINGRKDNHTWSKKVRQLKDQEVRYDRIVAENERTVATLKQWLPNFETYGDSVLAKVLPPRPLPPPTQQQAAVVSAPPLSPQEALERDLNRIHAAGL 504
            VT HCAERGRLLD+IWRSLN+LFE+VL EMS  +   + RL  ++  +E ERA+R +R+  H ++L+ T+E ++     H WS+ VR LK     +     +NE     +K+WLP+F+ Y +SVL ++L       P     A    P +S + AL  DL R+  AGL
Sbjct:  293 VTFHCAERGRLLDKIWRSLNDLFEYVLREMSTALADSDGRLTDLSEALEAERAERRARDAQHAHDLRTTKEELS-----HKWSRVVRDLKGAAAGHAARAKQNEALTELVKRWLPSFDVYKESVLVRLLER-----PEGAPQAARRNPHVSAEHALAADLQRLKDAGL 450
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8747.20220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWR4_ECTSI1.360e-15383.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z723_9STRA7.400e-2441.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8747contigEcto-sp13_S_contig8747:667..5142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1101
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004260.1
Cds size1098
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8747.20220.1prot_Ecto-sp13_S_contig8747.20220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8747 667..5141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.5195632-CDS-Ecto-sp13_S_contig8747:666..7731681464147.5195632-CDS-Ecto-sp13_S_contig8747:666..773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 667..773 +
1681464147.5319114-CDS-Ecto-sp13_S_contig8747:1335..14701681464147.5319114-CDS-Ecto-sp13_S_contig8747:1335..1470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 1336..1470 +
1681464147.5473454-CDS-Ecto-sp13_S_contig8747:2390..24661681464147.5473454-CDS-Ecto-sp13_S_contig8747:2390..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 2391..2466 +
1681464147.5574071-CDS-Ecto-sp13_S_contig8747:3096..32371681464147.5574071-CDS-Ecto-sp13_S_contig8747:3096..3237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 3097..3237 +
1681464147.5669591-CDS-Ecto-sp13_S_contig8747:3850..44381681464147.5669591-CDS-Ecto-sp13_S_contig8747:3850..4438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 3851..4438 +
1681464147.5786965-CDS-Ecto-sp13_S_contig8747:5090..51411681464147.5786965-CDS-Ecto-sp13_S_contig8747:5090..5141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8747 5091..5141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8747.20220.1

>prot_Ecto-sp13_S_contig8747.20220.1 ID=prot_Ecto-sp13_S_contig8747.20220.1|Name=mRNA_Ecto-sp13_S_contig8747.20220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=366bp
VTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVTRCEERLEVMNAVVEQ
ERADRESRETMHKNELQLTEELINGRKDNHTWSKKVRQLKDQEVRYDRIV
AENERTVATLKQWLPNFETYGDSVLAKVLPPRPLPPPTQQQAAVVSAPPL
SPQEALERDLNRIHAAGLWRVRRDDDDDGGGSISDSSMVGGGSVSDSSVI
ERSSSSDSIAGSGDLSNRGGRGTSPMTVRTTVIGRSGTAQSGGGGGGGSQ
SPKGISTAIATAKRTAGKSSSRRSASPTAATTAAAGAVSKTGVVSKRSLA
DSKMMDVLVQQGREAALRAEALRNETKEAEERAAKAKADAREHARDLLQA
CGKAEGVILSLLADPA
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mRNA from alignment at Ecto-sp13_S_contig8747:667..5142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8747.20220.1 ID=mRNA_Ecto-sp13_S_contig8747.20220.1|Name=mRNA_Ecto-sp13_S_contig8747.20220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4476bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8747:667..5142+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGCAGCACTGCGCGGAGAGAGGGCGTCTGCTCGATCGAATCTGGCG
GTCTCTGAACGAGCTCTTTGAGTTTGTGCTGTGGGAAATGTCGCGCACCG
TCACCAGGTATGCAACAGATATTATTGTGGCAGTGTTACGTGGTTCTCCA
TGTTTGCTGCCACAGCTACTGGAATAGGACTAGCCAAGGTTTAGTCGAGG
TGGCGGTGATGGCTTTGGACTCGCACATAACCTTGTTGTGTGTCGTTTGA
CAGTATCTTTGTGGTTATTGGTGTTGATGTTGGTGGTGTTGGTGGTGTTT
TTTGATGATGTAGAGATGCCCCAGCGCTCCGTTCTGGGCACACCATGTGA
CCACGATGTGTATCCCTGTGGCATGAATTAAGCGCGGGGGATGGCGAAAG
AGAGTTTTTCTGCGCTCGAGGACGACTACAGAGCGCTACGTTTCAATGTC
TGACGCGAAGGACAAAATGTGGATCGGATGATTGCCTATTGACGAAAAGG
CATGGCGAGATGGACTACAAAAGATTCCGAGTGTGTCCTCAGAGATCAAG
GAGCAGAAGACTATGTTGCTTGTGTCGGTCGATCCACGGGCGTGTGTTTG
GTGTCGTTGGGCTGGACGCACGTGTGAACCTTGTGCCTTATTCACTGGAG
CCGAACAACAATACCGCAGGTGCGAGGAACGGCTGGAGGTCATGAACGCG
GTCGTCGAGCAAGAACGAGCCGACAGAGAGAGCCGAGAAACGATGCACAA
GAACGAACTCCAGCTAACGGAGGAGCTTATCAACGGCAGGAAAGACAATC
ACACGTGGTGTTGGTTCGTGAGCACCATTTTTCTTCGAGCACGGCTTGCA
CCCGGTAGACGAAGGCAACCCTATCACAGCAGTACATGAATGCGACATTC
CAATGTAGGCCTGCACCAAGCTAATGGTGAAGGGGTGGGGGATAGTTTAC
AACGGTTGGTTGTCGAGCCTTCGATCACACATCATCATTTGTGGGAATCC
ATGCAGAGAAAGCAACAGAAGAATAAGCATTCAAGCGGCCAACTTAATAT
GCAGCAACCGTGAGTGGGGTGTCCAGCATTTCCACAGGGCGCAGACACCG
GCCCAGTTCGTACATTTCAACGTAACTCAACTTGTGATAGAGCATCGGGA
CGTAGTGGGAAGCTGAAAGCGATGTGTATATTTATCCTGAAAGGAGCATG
CATACCACAAAGAAGAGACGCCGCCCTTATTAAAGCAGGGTCAAGGTTTT
CCCCCAAACATTTAAAGCCCGGAACAATTTCAAAGGTTTATCATATCGCG
GGCCGTTTGGGCTCTTGAAAGGTGGGGGGACTCTGACAAGAACTGCATAC
CTGCGTATCGGTTCTGTAACAGGTACCAAAACGGTTTTGAGAAGGCGAGA
GGCCAATAGAGGGACAAAGACAGAAATAGAGAGATAGAGGGTAGAGTAGG
TGTTGGGTCGTTGTTCGTAGCTGGAGATGTATCGTACAAGCGTATGTCTC
GGTGGACGTGGCAGCGCACGCAACCTTCGTTGCCCTCGTTGTTGACGTCG
ATGTTGTTGGTGATACTACAGCTCCGTGTCAAAGTATGGCCGGTGGATCG
CAACAGCACCGAGTTTTCTTAGGAAGGTCCGAAACAAACACCAAAACGAA
TAAAACAACGTGCGCGCGTGCGCGTTGTTGTTGGTCTGCGCGTGTGAATA
CACCATTTTCTCTCCCTGCACCAGATGGTCCAAGAAGGTTCGGCAGCTCA
AGGACCAAGAGGTCCGCTACGACAGAATCGTCGCCGAAAATGAACGCACG
GTGAGCGGGGAAGGAAGAGGCAGCAAAAATGACGACAACAACCACCACAA
CACCACTCCTACCACCACCAACACCAACAACAACAACCAACCGTGACAAA
TACAAGCAAAACGATATCGACCCTCAGCAACACAAGTTGTGTCGCTTCTC
CTAAAAAAAAACGTACTCGTTGTATTAACTTAACCCGTGCCAGGAGCAAT
AGCCAGACGTGACAGGAGAGAAGGTTGCGTTGGGTGGTGTAGTAGCCGAT
TTGCACATGAACGGGTGTGCGGCACACTCCTCGAATGTTTCTTGCGCCTC
ATGTTTTGGTACACTTGATACTCCTTCCATATTCGTCGCTTCGGTAGCTT
CGGACCGCCCGCAGTCAGACATCGTGTTGTCGAGTCCACCCTACACCAGG
ACGTGGGTACAGATACGGTAAATGCACAGGTACAATTGACCCAAGACTCC
ATCTGCTCCGTGAAAGCTCCACACACCGGTCGGGACCAAACTTGTTGCTC
CTTGCAATTGCTAAGCTTCCTGCCGACTGGACGACCAGATTCTTGTTTTC
GTTTCTGCGGCTATGCACCCCCGCGCCCCTCCCCGGCCCCCCAACTCTGC
CCACTGCCAACGTTCCATACCAACAACCAGGTGGCGACCCTCAAGCAATG
GCTTCCGAACTTCGAGACATACGGGGACTCGGTGTTGGCGAAGGTCCTAC
CCCCGCGCCCGCTCCCTCCTCCGACACAGCAACAGGCTGCGGTCGTCTCA
GCTCCTCCTTTGTCCCCTCAGGTTTGCTAGTAACATGTCATGGACGTCAA
ACGTCCTCTAGTCGGGATCATATCAAGTTCGAGGCGTAAGCCCCCCTATC
CTCGTCATCCATTTGCTAGCCGACAGAGCAATACGTTTGGAGAGGACAAC
TCTTTGATTCGTTGCTCTTTGTTCTCTTTGCACAGAGGGTCACGAAACGC
ACAGACTGCAGGAACTTGGAGCTCTGATGCGGAGTTTAGGCCAATTTCAG
AGCTGAGGGGTTCCGGGTCAGAGTCTTTGGGGCAGAATGGCGGATGAAAC
GCAGCAGCTGTGTGTCGGATCGGATAGGTGCTAGGAGCGTACATCGAAGA
ATTCTCTTGAGCCTCCATCACTCTCAAAGCAAAATTCAACTTCAACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCACACACAAAAAAACAAAAAAA
AAAAATGCGAAGAAGAGAGAGAAACAGAGATAAAGAAAACGAACGATGGN
NNNNNNNNNATAGGGGCAAGGGGCGAACATCAAAGAATTCTCTTGAGCCC
CCATCCCTCTCAAAAAAAAATTCAACTTCACCCCCCCCCCCCCCCCCCGC
TCGCAATCAAAATATTGAATAAACACTATTATAGGAAGCGCTCGAGAGAG
ACCTCAACAGGATACATGCGGCCGGGCTTTGGCGCGTCCGCAGAGATGAT
GACGATGACGGTGGTGGCAGCATTTCCGACTCCTCCATGGTCGGTGGTGG
CAGCGTTTCCGACTCCTCCGTGATCGAGAGAAGCAGCAGCAGCGACAGCA
TCGCCGGAAGCGGGGACCTATCGAACCGTGGCGGACGAGGAACGTCGCCG
ATGACCGTCCGGACGACTGTGATTGGCAGAAGCGGGACTGCTCAAAGCGG
CGGCGGCGGCGGCGGTGGGTCCCAATCACCAAAAGGAATATCAACAGCAA
TTGCTACGGCGAAGAGAACGGCAGGAAAATCCTCGTCACGGCGGTCGGCG
TCGCCAACAGCGGCGACGACGGCGGCAGCAGGAGCAGTTTCCAAAACAGG
AGTCGTGAGCAAACGCAGTTTGGCCGACAGCAAGATGATGGACGTCCTTG
TGCAGCAAGGACGCGAGGCGGCCTTGCGGGCGGAAGCTTTGAGGAACGAG
ACGAAGGAAGCGGAGGAAAGGGCCGCCAAGGCCAAGGCCGACGCAAGAGA
ACACGCCAGGGATCTCCTGCAGGCAGGCCGAGAACTCTAGCAAAGCGCGT
AGACGTACAACCACCGACCAAACAGCCGATCCCCAGTCCCCCAACCCCAT
CGAATCTAAACGTTTCGTGGAACCAAGCGCGCACCCCGGAAAACGGAGGG
AGTCTGGGGCAGTGTTATCTTGACGATGTGCACGTTGAAAAGGAAGGAGA
TCCGACGGCCCCCAAGATTACGTGCACGTACAAGTAGGGCGACCAAATCA
AATGAAGAACCGCGTCATCAGTCGTAAGAGGGTTCCCGGCACATTATTTC
TATCTGTTTGATGTATCCTTGAATATGAACATATTTTCATTTCGGCGGTC
GGTCGGAGCAGGCCGTGCCCTGCCCCCCCCTGCAACAAAGATTTGCCTGG
CGCTAATCTTTTTGTGCATCTCAGCGCATGGAGCGAACGGTCAAGGGTCA
AGAACATTTTCGTCTGCGCGCAAAATATAGCCATTCCTTAGAGCCGTTCC
TTCGCTTATCCCCAAGACAGGAATTTCGGCCGGTGTAAGAGTTCAACCAC
CGCCACACTTCGTGGCGGAATACATACGAAATGCTGTTGCTGCTGCTGTC
ATCCCCACTCGCCGCGTGCAAACGCTCACTGCTGTTGTGTGGACCGATCG
TCAACCAACAACGCCCACAAGCAGGCGTGCGGGAAGGCCGAAGGGGTCAT
CCTGTCCCTCCTTGCGGACCCTGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8747:667..5142+

>mRNA_Ecto-sp13_S_contig8747.20220.1 ID=mRNA_Ecto-sp13_S_contig8747.20220.1|Name=mRNA_Ecto-sp13_S_contig8747.20220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8747:667..5142+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACGCAGCACTGCGCGGAGAGAGGGCGTCTGCTCGATCGAATCTGGCG
GTCTCTGAACGAGCTCTTTGAGTTTGTGCTGTGGGAAATGTCGCGCACCG
TCACCAGGTGCGAGGAACGGCTGGAGGTCATGAACGCGGTCGTCGAGCAA
GAACGAGCCGACAGAGAGAGCCGAGAAACGATGCACAAGAACGAACTCCA
GCTAACGGAGGAGCTTATCAACGGCAGGAAAGACAATCACACATGGTCCA
AGAAGGTTCGGCAGCTCAAGGACCAAGAGGTCCGCTACGACAGAATCGTC
GCCGAAAATGAACGCACGGTGGCGACCCTCAAGCAATGGCTTCCGAACTT
CGAGACATACGGGGACTCGGTGTTGGCGAAGGTCCTACCCCCGCGCCCGC
TCCCTCCTCCGACACAGCAACAGGCTGCGGTCGTCTCAGCTCCTCCTTTG
TCCCCTCAGGAAGCGCTCGAGAGAGACCTCAACAGGATACATGCGGCCGG
GCTTTGGCGCGTCCGCAGAGATGATGACGATGACGGTGGTGGCAGCATTT
CCGACTCCTCCATGGTCGGTGGTGGCAGCGTTTCCGACTCCTCCGTGATC
GAGAGAAGCAGCAGCAGCGACAGCATCGCCGGAAGCGGGGACCTATCGAA
CCGTGGCGGACGAGGAACGTCGCCGATGACCGTCCGGACGACTGTGATTG
GCAGAAGCGGGACTGCTCAAAGCGGCGGCGGCGGCGGCGGTGGGTCCCAA
TCACCAAAAGGAATATCAACAGCAATTGCTACGGCGAAGAGAACGGCAGG
AAAATCCTCGTCACGGCGGTCGGCGTCGCCAACAGCGGCGACGACGGCGG
CAGCAGGAGCAGTTTCCAAAACAGGAGTCGTGAGCAAACGCAGTTTGGCC
GACAGCAAGATGATGGACGTCCTTGTGCAGCAAGGACGCGAGGCGGCCTT
GCGGGCGGAAGCTTTGAGGAACGAGACGAAGGAAGCGGAGGAAAGGGCCG
CCAAGGCCAAGGCCGACGCAAGAGAACACGCCAGGGATCTCCTGCAGGCG
TGCGGGAAGGCCGAAGGGGTCATCCTGTCCCTCCTTGCGGACCCTGCA
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