mRNA_Ecto-sp13_S_contig87458.20218.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87458.20218.1
Unique NamemRNA_Ecto-sp13_S_contig87458.20218.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87458.20218.1 vs. uniprot
Match: B5LWJ3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ3_9PHYC)

HSP 1 Score: 74.3 bits (181), Expect = 2.000e-15
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 KQRGMIFSVNGVLSIIAAYVNIFTIASVLDLSSETTRRYAQFGVIQATLLFSFAFAVIPKKFPCLVATALFFVFEMKNLV 240
            +Q  MI S+NG+LS+ AAYVN+  IA  LD+ +E +R  A+  +++   L+SFA+++ P K  C ++ A+FFVFE+KN +
Sbjct:   25 EQGAMILSLNGLLSVAAAYVNLVQIALFLDIDTENSRTIAKHPIMRLLFLYSFAYSITPNKMACALSVAIFFVFEVKNFI 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87458.20218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWJ3_9PHYC2.000e-1543.75Uncharacterized protein n=1 Tax=Feldmannia species... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87458contigEcto-sp13_S_contig87458:62..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.3664825-UTR-Ecto-sp13_S_contig87458:61..731681464147.3664825-UTR-Ecto-sp13_S_contig87458:61..73Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig87458 62..73 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.3766913-CDS-Ecto-sp13_S_contig87458:73..3011681464147.3766913-CDS-Ecto-sp13_S_contig87458:73..301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87458 74..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87458.20218.1prot_Ecto-sp13_S_contig87458.20218.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87458 74..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87458.20218.1

>prot_Ecto-sp13_S_contig87458.20218.1 ID=prot_Ecto-sp13_S_contig87458.20218.1|Name=mRNA_Ecto-sp13_S_contig87458.20218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MIFSVNGVLSIIAAYVNIFTIASVLDLSSETTRRYAQFGVIQATLLFSFA
FAVIPKKFPCLVATALFFVFEMKNLV
back to top

mRNA from alignment at Ecto-sp13_S_contig87458:62..301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87458.20218.1 ID=mRNA_Ecto-sp13_S_contig87458.20218.1|Name=mRNA_Ecto-sp13_S_contig87458.20218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87458:62..301+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAACGCGGCATGATATTTTCAGTGAACGGCGTACTCAGCATTATTGC
GGCGTACGTCAACATATTTACCATTGCATCGGTGCTCGATCTCTCATCCG
AGACTACTCGGCGCTATGCACAGTTTGGAGTGATCCAGGCCACATTGCTT
TTTTCGTTTGCGTTCGCCGTTATACCCAAGAAATTCCCATGCCTCGTGGC
TACGGCACTGTTCTTCGTATTCGAAATGAAGAATCTAGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87458:62..301+

>mRNA_Ecto-sp13_S_contig87458.20218.1 ID=mRNA_Ecto-sp13_S_contig87458.20218.1|Name=mRNA_Ecto-sp13_S_contig87458.20218.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87458:62..301+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATATTTTCAGTGAACGGCGTACTCAGCATTATTGCGGCGTACGTCAA
CATATTTACCATTGCATCGGTGCTCGATCTCTCATCCGAGACTACTCGGC
GCTATGCACAGTTTGGAGTGATCCAGGCCACATTGCTTTTTTCGTTTGCG
TTCGCCGTTATACCCAAGAAATTCCCATGCCTCGTGGCTACGGCACTGTT
CTTCGTATTCGAAATGAAGAATCTAGTC
back to top