mRNA_Ecto-sp13_S_contig87455.20217.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87455.20217.1
Unique NamemRNA_Ecto-sp13_S_contig87455.20217.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: D7G2P9_ECTSI (ATP synthase: assembly factor for F1 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2P9_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.450e-20
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 ALGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQLA 135
            ALGIVNRLTLYVLLVD KGRVRWQGTGKATPDEVESLVRCARQLA
Sbjct:  305 ALGIVNRLTLYVLLVDQKGRVRWQGTGKATPDEVESLVRCARQLA 349
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: UPI000C1CF420 (uncharacterized protein LOC111381135 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CF420)

HSP 1 Score: 55.1 bits (131), Expect = 2.460e-8
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT Y+ L+D  GR+RWQG+G ATPDE+ SLV C   L
Sbjct:   85 LKILNLLTGYIYLIDKLGRIRWQGSGFATPDELSSLVSCTSFL 127
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A1D1ZT51_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZT51_AUXPR)

HSP 1 Score: 56.6 bits (135), Expect = 2.890e-8
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 ALGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQLA 135
            ALG+ NRLT YV LVD  GRVRW+G+G  TP+E+   +  A QLA
Sbjct:  193 ALGLTNRLTGYVFLVDGAGRVRWRGSGPPTPNELAGFLAAAEQLA 237
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A1D6KJR6_MAIZE (ATP10 protein expressed n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6KJR6_MAIZE)

HSP 1 Score: 52.8 bits (125), Expect = 9.700e-8
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT Y+ LVD  GR+RWQG+G AT +E+ SL+ C   L
Sbjct:   51 LQIINLLTRYIYLVDGLGRIRWQGSGSATQEELSSLIACTSIL 93
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A2U1PZI5_ARTAN (ATPase assembly factor ATP10, mitochondria n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZI5_ARTAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.150e-7
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT Y+ LVD  GR+RWQG G ATPDEV SL+ C   L
Sbjct:  221 LKILNLLTGYIFLVDKFGRIRWQGFGLATPDEVSSLLSCTSLL 263
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A0A9DB14_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DB14_ARUDO)

HSP 1 Score: 52.8 bits (125), Expect = 1.280e-7
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT Y+ LVD  GR+RWQG G ATP+E+ SL  C   L
Sbjct:   64 LKILNLLTGYIYLVDRLGRIRWQGFGSATPEELSSLTACTSIL 106
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: M4ES40_BRARP (Uncharacterized protein n=9 Tax=Brassica TaxID=3705 RepID=M4ES40_BRARP)

HSP 1 Score: 54.3 bits (129), Expect = 2.190e-7
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 IVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            I+N LT Y+ L+D  GR+RWQG G ATP+EV  L+ C  QL
Sbjct:  223 ILNLLTGYIFLLDKSGRIRWQGFGTATPEEVSQLLSCTSQL 263
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A6P6X895_COFAR (mitochondrial ATPase complex subunit ATP10-like isoform X1 n=7 Tax=Coffea TaxID=13442 RepID=A0A6P6X895_COFAR)

HSP 1 Score: 54.3 bits (129), Expect = 2.280e-7
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT YV L+D  GR+RWQG G ATP+EV SL+ C   L
Sbjct:  232 LNILNLLTGYVFLLDKFGRIRWQGFGSATPEEVSSLLACTALL 274
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: UPI00053C9340 (uncharacterized protein LOC104800565 isoform X1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9340)

HSP 1 Score: 54.3 bits (129), Expect = 2.290e-7
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L I+N LT YV L+D  GR+RWQG GK TP+EV SL+ C   L
Sbjct:  233 LRILNLLTGYVFLLDKCGRIRWQGVGKPTPEEVSSLLSCTSLL 275
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BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Match: A0A452Y4L0_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A452Y4L0_AEGTS)

HSP 1 Score: 51.6 bits (122), Expect = 2.640e-7
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    4 LGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQL 132
            L IVN LT Y+ L+D  GR+RWQG G AT +E+ SL  CA  L
Sbjct:   49 LQIVNLLTGYIYLIDRLGRIRWQGFGAATQEELSSLTACASIL 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87455.20217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2P9_ECTSI1.450e-2097.78ATP synthase: assembly factor for F1 component n=2... [more]
UPI000C1CF4202.460e-858.14uncharacterized protein LOC111381135 n=1 Tax=Olea ... [more]
A0A1D1ZT51_AUXPR2.890e-857.78Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A1D6KJR6_MAIZE9.700e-853.49ATP10 protein expressed n=1 Tax=Zea mays TaxID=457... [more]
A0A2U1PZI5_ARTAN1.150e-760.47ATPase assembly factor ATP10, mitochondria n=3 Tax... [more]
A0A0A9DB14_ARUDO1.280e-755.81Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
M4ES40_BRARP2.190e-756.10Uncharacterized protein n=9 Tax=Brassica TaxID=370... [more]
A0A6P6X895_COFAR2.280e-758.14mitochondrial ATPase complex subunit ATP10-like is... [more]
UPI00053C93402.290e-758.14uncharacterized protein LOC104800565 isoform X1 n=... [more]
A0A452Y4L0_AEGTS2.640e-755.81Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87455contigEcto-sp13_S_contig87455:5..139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.9
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7G2P9
Preferred nameATP10
Model size135
KEGG koko:K13717,ko:K18192
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051082,GO:0065003,GO:0070071,GO:0071840,GO:0098573
Exons1
EggNOG free text desc.mitochondrial proton-transporting ATP synthase complex assembly
EggNOG OGsKOG4614@1,KOG4614@2759
EC3.4.19.12
Cds size135
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.3267715-CDS-Ecto-sp13_S_contig87455:4..1391681464147.3267715-CDS-Ecto-sp13_S_contig87455:4..139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87455 5..139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87455.20217.1prot_Ecto-sp13_S_contig87455.20217.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87455 5..139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87455.20217.1

>prot_Ecto-sp13_S_contig87455.20217.1 ID=prot_Ecto-sp13_S_contig87455.20217.1|Name=mRNA_Ecto-sp13_S_contig87455.20217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
ALGIVNRLTLYVLLVDHKGRVRWQGTGKATPDEVESLVRCARQLA
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mRNA from alignment at Ecto-sp13_S_contig87455:5..139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87455.20217.1 ID=mRNA_Ecto-sp13_S_contig87455.20217.1|Name=mRNA_Ecto-sp13_S_contig87455.20217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87455:5..139+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGGATCGTCAACCGCCTGACGCTGTACGTTCTCCTGGTAGACCA
TAAGGGCAGGGTGCGATGGCAAGGGACGGGAAAGGCGACTCCCGACGAGG
TAGAGTCGCTCGTCCGGTGTGCTCGACAGCTCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87455:5..139+

>mRNA_Ecto-sp13_S_contig87455.20217.1 ID=mRNA_Ecto-sp13_S_contig87455.20217.1|Name=mRNA_Ecto-sp13_S_contig87455.20217.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87455:5..139+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCTGGGGATCGTCAACCGCCTGACGCTGTACGTTCTCCTGGTAGACCA
TAAGGGCAGGGTGCGATGGCAAGGGACGGGAAAGGCGACTCCCGACGAGG
TAGAGTCGCTCGTCCGGTGTGCTCGACAGCTCGCT
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