mRNA_Ecto-sp13_S_contig8744.20215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8744.20215.1
Unique NamemRNA_Ecto-sp13_S_contig8744.20215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 8.680e-144
Identity = 304/334 (91.02%), Postives = 305/334 (91.32%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIAARSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KSSGPANVPSTPMTPRELREKLRQPPSPSPTAGRADLPSASSA 996
            VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRAT D SRR Q              MVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIA RS Q  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KSSGPANVP TPMTPRELREKLRQP SPSP AGR DLP+ SSA
Sbjct:  118 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATSDASRRGQ--------------MVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIATRSLQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGPANVPLTPMTPRELREKLRQPSSPSPAAGRVDLPATSSA 437          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 455 bits (1170), Expect = 1.320e-143
Identity = 299/331 (90.33%), Postives = 300/331 (90.63%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIAARSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSSGPANVPSTPMTPRELREKLRQPPSPSPTAGRADLPSASSA 996
            VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXX  MRDAKKAL EGKSPFEAYQQRAT DPS R QGGXXXXXXXX   K+VVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAK IA RS Q            XXXXXXXXXXXXXXXXXXXX SSGPANVPSTPMTPRELREKLRQPPSPSP AGR D    SSA
Sbjct:  284 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXLDMRDAKKALAEGKSPFEAYQQRATSDPSTRGQGGXXXXXXXX---KVVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKAIATRSLQAAVAAGAKRAPTXXXXXXXXXXXXXXXXXXXXXSSGPANVPSTPMTPRELREKLRQPPSPSPMAGRVDRSPTSSA 611          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4PH40_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4PH40_9EUKA)

HSP 1 Score: 196 bits (497), Expect = 5.420e-55
Identity = 109/257 (42.41%), Postives = 148/257 (57.59%), Query Frame = 1
Query:    1 QVTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGK-------SPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLA-SVCAK 747
            QV +MQPFASQGW+E+ K+EEE GD+ RC ++L RGL FC Y+E LL+K +K +ER GN+  AR LLSRLK V ++  W+  LEGAL+EAR+GN +VARKV KYLM HVPW+GP+Y EA R EE+ E++E ++ I+                             +K LV          +  +AY++  T        GG                 + +ETV++A   I+KEL+WKV FEAAQ+EER    +C K
Sbjct:   85 QVHRMQPFASQGWLEHAKMEEECGDMERCGRVLNRGLFFCPYNENLLVKGIKHQERIGNIQAARALLSRLKRVTVDRTWKATLEGALMEARNGNGEVARKVFKYLMQHVPWHGPVYLEASRFEEREENYEKSIKII-----------------------------EKGLVGNPRYAPLWFAALKAYEKCETI-------GGI---------------QKVRETVQRAVKVITKELIWKVWFEAAQVEERSCWRICEK 290          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4DG20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG20_HETAK)

HSP 1 Score: 194 bits (492), Expect = 7.910e-55
Identity = 94/135 (69.63%), Postives = 108/135 (80.00%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIV 408
            V ++QP+A+QGW+EY KLEEE G L  CS+IL RGL FC YSE+LLIKA+K  ER G L  AR LL+RLK  G+E VWRTVLEGALLEAR+G + VARKV KYLM  VPWYGPIY+EAFRLEEK EHF SAL I+
Sbjct:   93 VCRLQPYAAQGWLEYAKLEEEGGHLETCSRILHRGLMFCHYSESLLIKAIKHFERLGQLRPARVLLARLKRAGVEKVWRTVLEGALLEARAGRSAVARKVFKYLMQQVPWYGPIYFEAFRLEEKNEHFRSALQII 227          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A2R5GDZ7_9STRA (Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.560e-54
Identity = 136/247 (55.06%), Postives = 162/247 (65.59%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQ----RATFDPSRREQGGXXXXXXXXXXXKMVVCS--RAKETVEKAKDCISKELVWKVHFEAAQIEER 726
            V + QPFA QGW+EY K+EEE G L  C  IL+RGL +C Y+E LL KA+K EER GNLD AR LLSRL+   +EN WRT+LEGALLEAR+GN  VARKV KYLM +VPWYGPIY+EA R EEK E F+ A+AIV      XXXXXXXXXXXXXXXXXX M  A +A    K+   A +     R   D +R                  V C   + +  +++A +CISKELVWKVHFEAAQ+ ER
Sbjct:  790 VNETQPFAHQGWLEYSKMEEECGRLLHCRSILQRGLEYCNYAEQLLTKAIKHEERLGNLDNARALLSRLRSQNVENAWRTILEGALLEARAGNIIVARKVFKYLMENVPWYGPIYFEATRFEEKNEEFDRAIAIVEKGLKEXXXXXXXXXXXXXXXXXXEMEQAIRAASGAKAQQVARESCQLLRKEEDRARFVLQDMFGVDDACFVVNTVPCKLLQTRGALQRAMNCISKELVWKVHFEAAQVAER 1036          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7R9VVS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVS4_9STRA)

HSP 1 Score: 182 bits (462), Expect = 8.390e-52
Identity = 84/122 (68.85%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLE 369
            V  +QP+ASQGW+E+ KLEEE GDL +C+ +L  GL++CEY+E LL KA+K EER G+L  AR+LL+RLKHVGIE VWRTVLEGALLEAR+GN  +AR+VLKYLM HVPWYGP+Y EA+RLE
Sbjct:   36 VCTLQPYASQGWLEFSKLEEESGDLDKCACLLNEGLSYCEYNENLLTKAIKHEERMGDLTRARQLLARLKHVGIEQVWRTVLEGALLEARAGNVAMARRVLKYLMHHVPWYGPLYLEAYRLE 157          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S4ITD3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ITD3_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.200e-51
Identity = 128/250 (51.20%), Postives = 156/250 (62.40%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLA-SVCAKE 750
            V  +QP+ASQGW+E+ KLEEE G+L RC+ +L  GL++CEY+E LL KA+K EER GNL  AR+LL+RLKHVGIE VWRTVLEGALLEAR+GN  +AR+VLKYLM HVPWYGP+Y EA+RLE  A+    ALAIV     XXXXXXXXXXXXXXX     + D    L                                          R  + +++A   IS+EL+WKVH EAAQ +ER A  V AK+
Sbjct: 1084 VCTLQPYASQGWLEFSKLEEESGNLERCASLLSEGLSYCEYNENLLTKAIKHEERMGNLTRARQLLARLKHVGIEKVWRTVLEGALLEARAGNVGMARRVLKYLMHHVPWYGPLYLEAYRLERDADRPIEALAIVERGLSXXXXXXXXXXXXXXXCEGMDIADGALELP-----------------------------------------RTSQMLDRATKSISRELLWKVHLEAAQAQERAALMVVAKD 1292          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: W7TFT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFT0_9STRA)

HSP 1 Score: 194 bits (494), Expect = 6.170e-50
Identity = 132/247 (53.44%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCA 744
            V ++QP A+Q W+ Y ++EEE GD+ R   IL++GL FCEYSE+LL +A+K  ER G+L  AR LLSRL+HV I+ VWRTVLEGALLEAR+GN  VARKV +YL+  VPWYGPIY EAFRLEEK +   +ALAIV     XXXXXXXXXXXXXXXXXXXX    K A+  G  P                                    R ++ + +A   ISKEL+WKVHFEAAQIEER AS  A
Sbjct:  670 VCRLQPHAAQAWLVYSRMEEECGDVERADGILQKGLLFCEYSESLLARALKHAERKGDLRFARSLLSRLRHVSIDKVWRTVLEGALLEARAGNNRVARKVFEYLIGCVPWYGPIYNEAFRLEEKCQGHAAALAIVERGLKXXXXXXXXXXXXXXXXXXXXXDAGKDAVAHGLVPD---------------------------------LPRTRDMISRALGSISKELIWKVHFEAAQIEERAASTAA 883          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: A0A7S2Y4L6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4L6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.410e-50
Identity = 111/249 (44.58%), Postives = 141/249 (56.63%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKE 750
            V ++QPFASQGW+EY KLEE+ G ++R S IL  GL +CEYSETLL +AVK +E+ GNL  AR +L+RLKHVGI+ VWRTVLEGALLEAR+GN D+AR+VLKYLM HVPWYGP+Y EA++LE    H   A+ IV                         +                Y++    D + R+                    R    +E+AK  ISKELVWK+H EAA + ER A    +E
Sbjct:   67 VCQLQPFASQGWLEYSKLEEDCGFMNRVSNILHAGLEYCEYSETLLTRAVKHQEKMGNLSSARGILARLKHVGIDKVWRTVLEGALLEARAGNHDMARRVLKYLMHHVPWYGPLYLEAYKLERDQGHPMDAMHIVERG----------------------LTTXXXXXXXXXXXXXLYEE---MDVTERQ----------------FHLPRTMHMIERAKSTISKELVWKLHLEAAHMLERTALAYVEE 274          
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Match: D3BQ41_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BQ41_POLPP)

HSP 1 Score: 191 bits (485), Expect = 7.900e-49
Identity = 102/241 (42.32%), Postives = 139/241 (57.68%), Query Frame = 1
Query:    4 VTKMQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQEERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKYLMTHVPWYGPIYYEAFRLEEKAEHFESALAIVXXXXXXXXXXXXXXXXXXXXXXXXXMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGXXXXXXXXXXXKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEER 726
            VTK QP+ SQGW+EY K+EE++G L +C QIL+ GL +C ++E LLIK ++ EE+  NL+GAR LLS+L+   I   WR V+EG LLEAR+GN ++ARK+ KYLM HVPWYGPIY EA++LEE+ E +E A+AIV                             +K L+E              DP                    +  +R   TVE+A+  +S+E+ WK++FEAAQIEER
Sbjct:  612 VTKTQPYISQGWLEYAKMEEDYGRLEKCQQILQLGLKYCPFNENLLIKGIRHEEKMDNLEGARALLSQLRDQSIFKTWRAVMEGGLLEARAGNIEIARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAIAIV-----------------------------EKGLME--------------DPXXXXXXXSALRLYEKTSHGFLQSTR--NTVERARQAVSREVTWKIYFEAAQIEER 807          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8744.20215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN71_ECTSI8.680e-14491.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEQ7_9PHAE1.320e-14390.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4PH40_9EUKA5.420e-5542.41Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S4DG20_HETAK7.910e-5569.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2R5GDZ7_9STRA1.560e-5455.06Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea ferm... [more]
A0A7R9VVS4_9STRA8.390e-5268.85Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4ITD3_9STRA3.200e-5151.20Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TFT0_9STRA6.170e-5053.44Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2Y4L6_9STRA6.410e-5044.58Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
D3BQ41_POLPP7.900e-4942.32Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8744contigEcto-sp13_S_contig8744:2551..6516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score449.1
Seed ortholog evalue2e-123
Seed eggNOG ortholog2880.D8LN71
Model size1503
Hectar predicted targeting categoryother localisation
Exons7
EggNOG OGs28JG8@1,2QRVD@2759
Cds size1146
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8744.20215.1prot_Ecto-sp13_S_contig8744.20215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8744 3347..6504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.0767088-UTR-Ecto-sp13_S_contig8744:2550..26351681464147.0767088-UTR-Ecto-sp13_S_contig8744:2550..2635Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8744 2551..2635 -
1681464147.0884397-UTR-Ecto-sp13_S_contig8744:3086..33461681464147.0884397-UTR-Ecto-sp13_S_contig8744:3086..3346Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8744 3087..3346 -
1681464147.1759577-UTR-Ecto-sp13_S_contig8744:6504..65161681464147.1759577-UTR-Ecto-sp13_S_contig8744:6504..6516Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8744 6505..6516 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.108392-CDS-Ecto-sp13_S_contig8744:3346..38111681464147.108392-CDS-Ecto-sp13_S_contig8744:3346..3811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 3347..3811 -
1681464147.1183863-CDS-Ecto-sp13_S_contig8744:4059..42711681464147.1183863-CDS-Ecto-sp13_S_contig8744:4059..4271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 4060..4271 -
1681464147.1296477-CDS-Ecto-sp13_S_contig8744:4607..47261681464147.1296477-CDS-Ecto-sp13_S_contig8744:4607..4726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 4608..4726 -
1681464147.1400385-CDS-Ecto-sp13_S_contig8744:5153..52841681464147.1400385-CDS-Ecto-sp13_S_contig8744:5153..5284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 5154..5284 -
1681464147.1509593-CDS-Ecto-sp13_S_contig8744:5926..60741681464147.1509593-CDS-Ecto-sp13_S_contig8744:5926..6074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 5927..6074 -
1681464147.1624672-CDS-Ecto-sp13_S_contig8744:6433..65041681464147.1624672-CDS-Ecto-sp13_S_contig8744:6433..6504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8744 6434..6504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8744.20215.1

>prot_Ecto-sp13_S_contig8744.20215.1 ID=prot_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MQPFASQGWVEYCKLEEEFGDLSRCSQILRRGLTFCEYSETLLIKAVKQE
ERAGNLDGARELLSRLKHVGIENVWRTVLEGALLEARSGNTDVARKVLKY
LMTHVPWYGPIYYEAFRLEEKAEHFESALAIVQRGLQEIPRYGPLWFGAF
RLSEKLDMRDAKKALVEGKSPFEAYQQRATFDPSRREQGGSGSGGGGGGG
GKMVVCSRAKETVEKAKDCISKELVWKVHFEAAQIEERLASVCAKEIAAR
SSQAAAAAGAKRTPPTAAAAAAGGGATTAASPAAAKSSGPANVPSTPMTP
RELREKLRQPPSPSPTAGRADLPSASSAVAAADSAAVPEAAAAAAAATSG
GGGGGGGGGGGGGTAAAAGELGLAQQRRAPT*
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mRNA from alignment at Ecto-sp13_S_contig8744:2551..6516-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8744.20215.1 ID=mRNA_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:2551..6516- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACCAAGATGCAGCCATTCGCCTCCCAGGGGTGGGTGGAGTACTG CAAGTTGGAGGAAGAGTTTGGCGACCTCAGCAGGTAATACCATGTGTGTG TGTTTGTGTTTTTTTTTTGCTTTTTCTGGTGGTGTTGGTCCAACGCGGAT GTGTATCGTTCTCGGTGGAGGCCGCTGCTGATTCTGTGCGGTGCGACGGC TGATATGCGTCCCGGGTCCGCATTTTTCGTTGGAGGTCTTTCAGACGCCA GAATCAAAAGCCATTGGACTTGTCAGCCTCTGACTACAGTAGGCTAATGT TTTCATTTCGGCTTCAAAAAAAGTTAGCCTGCAGCACGGGGCGGATTTCC ACCACCGTGTGTGGCTTTCGTTTTGGCTTGTTTTGCTCGCAGGCCACTAA TACTGCTCTTTTCACCTCTTGCATTGTCTCGGCGAACGCCAGGTGTTCCC AAATCCTTCGGAGGGGTTTGACGTTCTGCGAGTACTCGGAGACGCTTTTG ATCAAGGCCGTGAAGCAAGAGGAGAGGGCGGGAAACCTCGACGGCGCGAG GGAGCTGCTCAGCCGCCTGAAGCATGTCGGGATCGAGAACGTGAGCTTCG AGGGAAGGATAGAAGGAGGCGGGCGGCGGCGGTGCCGGGAGGGGGGCGTA CTCATGTTTTGTATGTTTGACCATGGACCACGCGTCCTCGAGAGGACGGA GGGGGAGATGAACATCGGGTCTGGTGGGAACATGACAAAGAAGAGCAGAA CCTGTAATCTTCTGGCCCGAAACGGGGAGGGAGGCTTGGCGATTCGCCAA TCACAGCACCCTCACCTGATTAAACATTGACAACCCTCAAATATGGTGAC GTACAAAAGATCCGAGTAGACTGATGACTCACCTTGTGTGTATTCGCCCG CAACTTTACGGTACAGCAGTCGTCGCCGTAACGACGACGCTCATGATTTT TTTTCCAAGAACGTATCAAGAACGTATCGATATTGCTGTCGGTACAATCA TACCCTACCCCCCCCTGTTGTATTTGCATTCTGCGGGGCACCATGATTCT GAAAGAGAGTTGGATGAGCGTAGCGGGCACGACTGTAGTCAAGAGATACA CACCGCCGATGTTCGACTTTTGGCAAACCTTCTCTCGTGCTGCCGCTCAA ATGCGGTTGATCGACCCTTCCCGCACGCCGCTGCTACTGCCGCTATCGGT CTTGTTCTCTTGTCCTCCTGTGTCTGTTGAAGGTTTGGCGGACGGTGTTG GAAGGCGCGCTCCTCGAGGCCCGGTCCGGCAACACCGACGTCGCTCGCAA GGTTCTCAAGTACCTCATGACGCACGTTCCCTGGTACGGGCCCATCTACT ACGAAGCGTTTAGGTGAGAGGCACGGGGATGGATAGGACTGTGGCTAAGG CTAGCTCACTCTAGGGTTGGGGGGTCCGGGAGGGGGGGGGGGCTCTCCAT GTTTTGCCAGGGGGCTGCCTCGTGTGAGAATCGCTCTCACTGGTGGGGAG GAACACACCTTGTTATTTTCGAGGGGGGTACAAGTATTCGACTTTAGCTT TCCCTTTCGGGTTCTCAACGCCCGTTTGTGGTAGTTATTGTGCACGGATC CCAGCATTGAGGGCAAGGGCTGGGGGCGGCGAGTTTCCGTAGGGTACGTG AGTGAATCGATGTCATCAGTGTGAAGTCTCGTGCAGTTGTAGAGGTAGAA GTGAGGGTTGCGACAACGAAATCATTAACGCCCATGCATGTGATAAATAG TGAGCAATCGCTTTTCTTTCTTTAACCTCCCCCGAAACAGGCTCGAAGAG AAGGCGGAACACTTCGAGAGCGCACTTGCAATCGTGCAGAGGGGTTTGCA GGAGATCCCGCGCTACGGCCCGCTGTGGTTTGGCGCTTTCCGACTGAGCG AGAAGCTGGGTGAGCGGTTTGTTTTCCGTCCCAGTGTGACAGGTCGCATC TAGTGTTGTTTCTGCTGTTGCTGCTGCTGCTGTTGTCGTCTGCCTTGTTT TTCTGTTGTTGTCATCGTGGTTTGTTATCGTTGTTGTTGCTGCTGTTGCT ATCCATGTCGTTTTTTGTGTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGGATTCGTCGTTCGTCCGTCGTCGT CGTGGCCGCGCATGCAATACACATTGCGTAACCCTGGCCCGCACGCTGCT GTGTTCTTGTTTCTCTTCCGCGCGCTCGCCACACACACACGTCAGACATG CGTGACGCGAAGAAGGCTTTGGTCGAGGGGAAGTCACCCTTCGAAGCCTA CCAACAGAGGGCGACGTTCGATCCTTCCAGGCGAGAGCAGGGCGGCAGCG GTAGCGGCGGCGGCGGCGGCGGCGGCGGCAAGATGGTGGTCTGCAGCCGC GCGAAGGAGACCGTCGAGAAGGCTAAGGACTGCATCAGCAAGGAGCTCGT GTGGAAGGTGGGAGGAAGCAACCGCCTCTGTCCGTCGCATGTTGTTGGTG TTGGTGTTGTTGCCGCTGCTGCTGCAGCTGCTACCGTCATGGAAGCACGT TTCGTGCGTCTGGTCGTGCTCGATTTCGTACCGGTCCTCGATATTGAGTG TCGAAAACAGTCGGGATCCATCCGTGCCACTGGCTTCGTTGTCTGACTGC TGTGCCGATCGATGGATTTGCCTACCTTCGTTTTGGTGTATACAACTTTT CACAGGTGCATTTCGAAGCAGCTCAGATTGAGGAGCGGCTGGCCAGCGTG TGCGCCAAGGAGATCGCAGCCAGGTCCTCACAAGCAGCAGCAGCAGCAGG AGCTAAGCGAACACCACCCACTGCTGCCGCTGCTGCTGCTGGTGGTGGTG CTACAACCGCCGCTTCCCCCGCCGCGGCGAAGAGTAGCGGCCCCGCCAAC GTGCCGTCTACGCCGATGACGCCCCGAGAGCTGCGCGAGAAGCTTCGTCA ACCCCCGTCGCCGTCACCCACGGCGGGGCGCGCCGACCTACCCTCGGCGT CTTCGGCCGTCGCCGCCGCTGATTCCGCCGCTGTGCCAGAAGCAGCTGCA GCAGCAGCAGCCGCTACCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG CGGCGGCGGCGGCACGGCGGCAGCGGCGGGGGAGTTGGGGTTGGCACAGC AGAGACGAGCACCGACCTAGTACGCTCGAAAGCGCTGCCGTCCTCGTCAT CAGGGCAAACGGCCGCGGCAGCAGCAGCAGCAGCAGAAGCTGGGTCGATG GGCGTGGGAGACAGCGGTGCGGAGGCGGGAGGAGTGGCGGTTGCTCATGT CGATGATGGCGGTGGTGGCAGCGGCGGTGGCGTTGTGAGCGAGGCGCAGG CGAGGGACTCGCTGCTGGGGCCCTGCCGGTCCGCTTACGCTCACGCGGTG CTCACGTGCCCTCACAACTTGCGCTGGAAGGTGAGGACCTGCTTGCTTGC TCTCTCTTCTCTCGAGCGTTTTTGTTAGGTCTTTCCTTCGGTCAGTTTTG TTCTCTTTCATGAGAAGACGAAAGGACAAGTCGGGTGGGAGGTTGCTCTC TTTCGTACAGGGCGGGGATTGCATGCGTGTGTACATGTGTTTGTCGTTAT ATATTTAAGCATCGACTACGTTAGCTGCTCATTGGCAGAACAGTGCGTTA CACCAGTCTTCGTGGCAGTAGGACGAAAGAGGCCAATACGTTTTCTCGTC GACCGGCGGGCTCTCCGTTCAGGGTGTGTATTTCTTGATATGTCACCGTC GACCGCGCAACAGGCGGACCAATTAATATCCATCAGTCCTTCATGAATCT GTATGTTTTGCACCCTGTGTTCTTGGCTATTATTTTATTCACTTAACTCC CCTTGACATGCTGGTGGTTTTATTTTTTCAGGTGTGGTTGGCGGGGGCGA GGATGGAGCTGGCAGCCGGGAACTGCCTCCACGCGCAGCGCCTTCTCAAC CGAGCTTTCCAGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8744:2551..6516-

>mRNA_Ecto-sp13_S_contig8744.20215.1 ID=mRNA_Ecto-sp13_S_contig8744.20215.1|Name=mRNA_Ecto-sp13_S_contig8744.20215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8744:2551..6516- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCATTCGCCTCCCAGGGGTGGGTGGAGTACTGCAAGTTGGAGGA
AGAGTTTGGCGACCTCAGCAGGTGTTCCCAAATCCTTCGGAGGGGTTTGA
CGTTCTGCGAGTACTCGGAGACGCTTTTGATCAAGGCCGTGAAGCAAGAG
GAGAGGGCGGGAAACCTCGACGGCGCGAGGGAGCTGCTCAGCCGCCTGAA
GCATGTCGGGATCGAGAACGTTTGGCGGACGGTGTTGGAAGGCGCGCTCC
TCGAGGCCCGGTCCGGCAACACCGACGTCGCTCGCAAGGTTCTCAAGTAC
CTCATGACGCACGTTCCCTGGTACGGGCCCATCTACTACGAAGCGTTTAG
GCTCGAAGAGAAGGCGGAACACTTCGAGAGCGCACTTGCAATCGTGCAGA
GGGGTTTGCAGGAGATCCCGCGCTACGGCCCGCTGTGGTTTGGCGCTTTC
CGACTGAGCGAGAAGCTGGACATGCGTGACGCGAAGAAGGCTTTGGTCGA
GGGGAAGTCACCCTTCGAAGCCTACCAACAGAGGGCGACGTTCGATCCTT
CCAGGCGAGAGCAGGGCGGCAGCGGTAGCGGCGGCGGCGGCGGCGGCGGC
GGCAAGATGGTGGTCTGCAGCCGCGCGAAGGAGACCGTCGAGAAGGCTAA
GGACTGCATCAGCAAGGAGCTCGTGTGGAAGGTGCATTTCGAAGCAGCTC
AGATTGAGGAGCGGCTGGCCAGCGTGTGCGCCAAGGAGATCGCAGCCAGG
TCCTCACAAGCAGCAGCAGCAGCAGGAGCTAAGCGAACACCACCCACTGC
TGCCGCTGCTGCTGCTGGTGGTGGTGCTACAACCGCCGCTTCCCCCGCCG
CGGCGAAGAGTAGCGGCCCCGCCAACGTGCCGTCTACGCCGATGACGCCC
CGAGAGCTGCGCGAGAAGCTTCGTCAACCCCCGTCGCCGTCACCCACGGC
GGGGCGCGCCGACCTACCCTCGGCGTCTTCGGCCGTCGCCGCCGCTGATT
CCGCCGCTGTGCCAGAAGCAGCTGCAGCAGCAGCAGCCGCTACCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCACGGCGGCAGC
GGCGGGGGAGTTGGGGTTGGCACAGCAGAGACGAGCACCGACCTAG
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