mRNA_Ecto-sp13_S_contig8736.20201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8736.20201.1
Unique NamemRNA_Ecto-sp13_S_contig8736.20201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.940e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGATK 243
            PVRI LDRDVDMQITGHRHAFLAKYKAGATK
Sbjct:   88 PVRICLDRDVDMQITGHRHAFLAKYKAGATK 118
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGATK 243
            PVRI LDRDVDMQITGHRHAFLAKYKAGATK
Sbjct:  976 PVRICLDRDVDMQITGHRHAFLAKYKAGATK 1006
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.170e-7
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGATK 243
            PV I LDRDVDMQ TG RHAF AKYKAGA+K
Sbjct:  859 PVNIMLDRDVDMQTTGQRHAFTAKYKAGASK 889
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.180e-7
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGA 237
            PVRISLDRDVDM ITG RHAFLA+YKA A
Sbjct:  941 PVRISLDRDVDMHITGQRHAFLARYKAAA 969
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A3N7FIC3_POPTR (FAD-binding PCMH-type domain-containing protein n=10 Tax=Saliceae TaxID=238069 RepID=A0A3N7FIC3_POPTR)

HSP 1 Score: 53.5 bits (127), Expect = 2.340e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGATK 243
            PV+++LDRDVDM ITG RHAFL KYK G TK
Sbjct:  779 PVKLTLDRDVDMMITGQRHAFLGKYKVGFTK 809
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A833QGC2_9POAL (Xanthine dehydrogenase-like isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QGC2_9POAL)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-6
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGAT 240
            PV+I LDRDVDM ITGHRH+FL KYK G T
Sbjct:  850 PVKIVLDRDVDMMITGHRHSFLGKYKVGFT 879
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A8B8NII5_9MYRT (LOW QUALITY PROTEIN: xanthine dehydrogenase 1-like n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NII5_9MYRT)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGATK 243
            PV+I+LDRDVDM ITG RH+FL KYK G TK
Sbjct:  861 PVKITLDRDVDMMITGQRHSFLGKYKVGFTK 891
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: UPI000B8CF7D1 (xanthine dehydrogenase 1-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF7D1)

HSP 1 Score: 52.8 bits (125), Expect = 4.270e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGAT 240
            PV+I+LDRD DM ITGHRH+FL KYK G T
Sbjct:  564 PVKITLDRDTDMMITGHRHSFLGKYKVGFT 593
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A7R9U4K0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4K0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.370e-6
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:  151 PVRISLDRDVDMQITGHRHAFLAKYKAGA 237
            P+RI LDRDVDMQ TG RHAF AKY+AGA
Sbjct:  733 PIRIMLDRDVDMQCTGQRHAFYAKYRAGA 761
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BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Match: A0A444YCJ3_ARAHY (FAD-binding PCMH-type domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444YCJ3_ARAHY)

HSP 1 Score: 52.4 bits (124), Expect = 5.860e-6
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  145 SWPVRISLDRDVDMQITGHRHAFLAKYKAGAT 240
            +WPV+++LDRDVDM ITG RH+FL KYK   T
Sbjct:  538 NWPVKLTLDRDVDMMITGQRHSFLGKYKVRFT 569
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8736.20201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW60_9PHAE1.940e-1096.77Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
D7G4V3_ECTSI2.000e-1096.77Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A836C8N1_9STRA9.170e-780.65Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
W7TFQ7_9STRA9.180e-786.21Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A3N7FIC3_POPTR2.340e-674.19FAD-binding PCMH-type domain-containing protein n=... [more]
A0A833QGC2_9POAL3.200e-676.67Xanthine dehydrogenase-like isoform X1 n=1 Tax=Car... [more]
A0A8B8NII5_9MYRT3.200e-674.19LOW QUALITY PROTEIN: xanthine dehydrogenase 1-like... [more]
UPI000B8CF7D14.270e-673.33xanthine dehydrogenase 1-like n=1 Tax=Carica papay... [more]
A0A7R9U4K0_9STRA4.370e-679.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A444YCJ3_ARAHY5.860e-665.63FAD-binding PCMH-type domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8736contigEcto-sp13_S_contig8736:1638..4106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score64.3
Seed ortholog evalue3e-08
Seed eggNOG ortholog2880.D7G4V3
Model size248
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
Exons3
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
Cds size246
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.186737-CDS-Ecto-sp13_S_contig8736:1637..17341681464146.186737-CDS-Ecto-sp13_S_contig8736:1637..1734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8736 1638..1734 -
1681464146.1998782-CDS-Ecto-sp13_S_contig8736:1929..20001681464146.1998782-CDS-Ecto-sp13_S_contig8736:1929..2000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8736 1930..2000 -
1681464146.216391-CDS-Ecto-sp13_S_contig8736:4028..41061681464146.216391-CDS-Ecto-sp13_S_contig8736:4028..4106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8736 4029..4106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8736.20201.1prot_Ecto-sp13_S_contig8736.20201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8736 1638..4106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8736.20201.1

>prot_Ecto-sp13_S_contig8736.20201.1 ID=prot_Ecto-sp13_S_contig8736.20201.1|Name=mRNA_Ecto-sp13_S_contig8736.20201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
RSVRRQGDSFHILVVCGCSRGPLDKTPWKSLNLKKVGEEALDSSNTTASW
PVRISLDRDVDMQITGHRHAFLAKYKAGATK*
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mRNA from alignment at Ecto-sp13_S_contig8736:1638..4106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8736.20201.1 ID=mRNA_Ecto-sp13_S_contig8736.20201.1|Name=mRNA_Ecto-sp13_S_contig8736.20201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2469bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8736:1638..4106- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGCGTTCGGCGGCAAGGAGACTCGTTCCATATTCTTGTCGTGTGTGG
CTGCTCTCGGGGCCCACTTGACAAAACGGTACGTACGGTACCGAGGTGGG
GTCGCCTGGTTCGTGGCAGACGGGTTTAGCCTCAATTCCATCTTTTTCCT
CCAGTGTTTTTGAGACTAGCGATCTCTGTTTACGCGGCCCATGCTACTTT
TATTGCATTACCCTTCGTGCACCAGTACGATCGATCAATCTTTTTGTGTG
CCCTAAAAATATCGGGGCTTTGCACGGAGTAGAAGCGCTCCGCGGAGCGG
GTTTTATTTATTTTTAGGTCCCACGGAGAGGAGCGGAGCGGTTTTATTCA
TTTGAAAATGTCACGGAGCGGCGCGGAGCGGTTTATCCGAGGGCAAAAGT
CTCACGGAGCCGAGCGGTATTTTTGTTCATGTCACGGAGCGGTTTATCCG
TAGTGCGTTTTTTTCACGGAGCGGTTTCGTTTACTCCGTAGCATCGACCG
CGCGAAACCGTGGCGTTGAGCACGGTTTTCAGAAAAAACGTCGAAACCGC
ACGGATATCCGTACAAAATCGACGGAGTACCTGCACCTTCGTGGAAAACG
TTGGGTTCGGCACATCGAAGACCGATCTTTCCGCACGGTGTGCTGTGGTT
GGAGGCCGCCGGTGATACCGTATGCGTCCTCGCCGCTAGGGCAGCCCAAA
CAGCCCAAAAAGCAAAAAGCAAAAAGCCAGCTCTCAATTTATCAATTGTG
TGTTATTCAGAAAGGAATCGTTCCGCACATCGATATCTCCTCGACTCATG
TCATACGTTCCTGCTTCACGTACAACAGCAGATAGTTCCTCATTCGCCTG
TCGATGAACCTTGCCAGTACTGTAGCACTCTGGTAACACCAGGTGTCTTG
TGTACTCATCCAAATACATACATACGCCCCTACTTCACTCAGTCAGTCAG
ATTCGACATCGACAACCACTTGCTGCTCTCCCGCACGAGCGGCTTGGACA
GATGCAGCTTTAGCCTTCCCAACAGACGCGCTGCAAGCAGCTTTCCCAAC
TCCATGTCCAACTTCATGGTCTCGGGAAAAAAAGGGGGGCTAGACGTGGG
GAACATCACCATCGACTGCCGAAGATTGTTGCACACGAGTCCCAGCCCCG
ACAAAACTCCCTCCTCTCTGATTGGCAACTAGTGCTGTCAATGCAATGGT
ACATGCGAGCAAGCATGGACAAGATGGGGAATTGCGCAGCAGAAACAACG
TTTCCATGGGGGTCATGACGCGGGATGCCGGCATCCCGCGAAAAACCTAG
GACGTCATAGCGTTTGTGTGTGGAGCGGACTGCTGTTGTTGTGTGTGTTG
GCACATTGAAAGTTATGTTGTTACTTGTTGTGTGGCTGCTGTGAAAGTAG
AACAGAAAGAAAGAAAAAATGCCGTGACTCCGTGGGAAAAAACGTGTACC
CTGCAAGAAACCGTGACTCCGTGGGAAAACGGTGACTGTATTCTGTGGTT
TTATCCGTGGTTGTGTGACGGAGTAGCTGAAACCGCTCCGTGAAAAAACC
GCTTGTACGGATTTTTGGGAAATCCCACGGAGCGGAGCGGAGCGGTTTAT
CCGAGGGCAAAACTCTCACGGAGCGCAGCGGTTTTTCTATCATGTCACGG
AGCGGTTTAATCCGCTCCGCTCCATGAAAAAAAAACGCTCCGTGCACAGC
CCTGTAAAATATTGGCCTGGCAACATCGCAGCCTCTTGGTGCTTACTGAA
ACACTCTTCCTCGTGTGTCGCGTTTTGGTTTTGCCGTGTCCTGGAAGAGT
TTCGTCCGGCCTACGCCAATCCCGTCGGGCTTCGGCGACCCATCGGAAGT
CGCCAATAACCGCGATGAAGGCACCGAACACGCATTTTGCCACTTTCGGG
GCCTCGTGGTTGCTGTCATGTTCGGCCTTTCATATGCATACCTGTCTTTG
TTGCTCACTCTCCCACGACATGTCCCTCGGGGCCCCGTGATTTCTGTCAT
GTTTGACTTTTCATTTGCATATCTATCTCTGTTGCTCACTCTCGACTTGT
TGGACATTTTCTATCATTGTTTGCTTTTTGTGCCTTTTTTCTGGTATCGC
CCATAGCCATGGAAATCGTTGAATTTGAAGAAGGTGGGAGAGGAGGCACT
TGACTCAAGCAACACAACTGCTAGCTGGTGAGACCAACCGGTAGAGCAAC
AACATCGATGTCTGGAGATTCTCGGGTCCACGCCACAGTACTTGTGTCAG
AAAGATTGACCTTTTGTTCATAGAGAATCCGGGGAGACGGTGTGCGGTCA
CTCGAAATGAGTTGACGTCGCCACGTGTTTTGTTGTTTGGGATGGCCTGT
CACGCGCACATGGTACTCGCAGGCCCGTGAGGATCTCTCTTGACAGGGAC
GTGGACATGCAGATCACCGGACACCGACACGCCTTCCTCGCCAAGTACAA
GGCGGGCGCTACAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8736:1638..4106-

>mRNA_Ecto-sp13_S_contig8736.20201.1 ID=mRNA_Ecto-sp13_S_contig8736.20201.1|Name=mRNA_Ecto-sp13_S_contig8736.20201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8736:1638..4106- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGCGTTCGGCGGCAAGGAGACTCGTTCCATATTCTTGTCGTGTGTGG
CTGCTCTCGGGGCCCACTTGACAAAACGCCATGGAAATCGTTGAATTTGA
AGAAGGTGGGAGAGGAGGCACTTGACTCAAGCAACACAACTGCTAGCTGG
CCCGTGAGGATCTCTCTTGACAGGGACGTGGACATGCAGATCACCGGACA
CCGACACGCCTTCCTCGCCAAGTACAAGGCGGGCGCTACAAAGTGA
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