mRNA_Ecto-sp13_S_contig8722.20186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8722.20186.1
Unique NamemRNA_Ecto-sp13_S_contig8722.20186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8722.20186.1 vs. uniprot
Match: D8LID2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.730e-22
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    4 LLFFGQDFLGHHPSILAHDSQNGSSYSSTATSWIGARFFVLWAQKPKLEITRNSF 168
            L FFG DFLG HPS LA DSQNG SYSSTAT W+GARF VLWA KPKLEI R  F
Sbjct:    2 LSFFGYDFLGDHPSTLAQDSQNGRSYSSTATPWMGARFMVLWAHKPKLEIARQIF 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8722.20186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LID2_ECTSI2.730e-2276.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8722contigEcto-sp13_S_contig8722:1332..1499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464145.0214756-CDS-Ecto-sp13_S_contig8722:1331..14991681464145.0214756-CDS-Ecto-sp13_S_contig8722:1331..1499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8722 1332..1499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8722.20186.1prot_Ecto-sp13_S_contig8722.20186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8722 1332..1499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8722.20186.1

>prot_Ecto-sp13_S_contig8722.20186.1 ID=prot_Ecto-sp13_S_contig8722.20186.1|Name=mRNA_Ecto-sp13_S_contig8722.20186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
QLLFFGQDFLGHHPSILAHDSQNGSSYSSTATSWIGARFFVLWAQKPKLE
ITRNSF
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mRNA from alignment at Ecto-sp13_S_contig8722:1332..1499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8722.20186.1 ID=mRNA_Ecto-sp13_S_contig8722.20186.1|Name=mRNA_Ecto-sp13_S_contig8722.20186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8722:1332..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACTTTTGTTTTTCGGCCAAGATTTTTTGGGTCATCACCCCTCAATTCT
TGCCCACGACAGCCAGAATGGGAGTAGCTATTCCTCGACGGCAACGTCTT
GGATTGGAGCGCGGTTTTTTGTGTTGTGGGCGCAGAAACCAAAGCTAGAA
ATCACTAGGAACAGTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8722:1332..1499+

>mRNA_Ecto-sp13_S_contig8722.20186.1 ID=mRNA_Ecto-sp13_S_contig8722.20186.1|Name=mRNA_Ecto-sp13_S_contig8722.20186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8722:1332..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACTTTTGTTTTTCGGCCAAGATTTTTTGGGTCATCACCCCTCAATTCT
TGCCCACGACAGCCAGAATGGGAGTAGCTATTCCTCGACGGCAACGTCTT
GGATTGGAGCGCGGTTTTTTGTGTTGTGGGCGCAGAAACCAAAGCTAGAA
ATCACTAGGAACAGTTTT
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