mRNA_Ecto-sp13_S_contig8719.20184.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8719.20184.1
Unique NamemRNA_Ecto-sp13_S_contig8719.20184.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8719.20184.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.670e-37
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 2 
Query:    2 GSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLFLQMGRHE 208
            GSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVL LQMGRHE
Sbjct:  369 GSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLLLQMGRHE 437
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8719.20184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS8_ECTSI3.670e-3798.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8719contigEcto-sp13_S_contig8719:5296..6168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size213
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464144.8759294-CDS-Ecto-sp13_S_contig8719:5295..53711681464144.8759294-CDS-Ecto-sp13_S_contig8719:5295..5371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8719 5296..5371 +
1681464144.8868601-CDS-Ecto-sp13_S_contig8719:6033..61671681464144.8868601-CDS-Ecto-sp13_S_contig8719:6033..6167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8719 6034..6167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8719.20184.1prot_Ecto-sp13_S_contig8719.20184.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8719 5296..6167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8719.20184.1

>prot_Ecto-sp13_S_contig8719.20184.1 ID=prot_Ecto-sp13_S_contig8719.20184.1|Name=mRNA_Ecto-sp13_S_contig8719.20184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GVDHYVRLNDNSPGVPRGHSLLQQQGKGPSFGLGGAAERAADRVELARPS
EQRPSEVRRRAVPTNGTTRG
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mRNA from alignment at Ecto-sp13_S_contig8719:5296..6168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8719.20184.1 ID=mRNA_Ecto-sp13_S_contig8719.20184.1|Name=mRNA_Ecto-sp13_S_contig8719.20184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8719:5296..6168+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCGACCATTACGTACGGCTCAACGATAACTCTCCAGGCGTTCCACG
GGGGCATTCTTTGCTTCAACAACAAGGTACTCTCCAACAAAACCGATTCA
CCCGCCCTCATCAGGGCACCCGCCTTATTCGAAGTGTAGAACAACTTGAT
TGTTCCGTCTGTGCCAGCCAATTTTACCCGCCTCGTAACGGGCGCCCGCC
TTATGGAGGGCCTACAACGGTACTGTGCTTCCTATCACGTGCCGTCCAAT
GCCATGCAGAGCGAGAAGTAGGCCGCAAAGTTTGGGCATCGCTTTCGCTT
CATTTTTCGTCCCGAGCGAAAAACAGCAGCGTTCGTTGCTGCTCGTGATA
ACTTGCTCGGTTTACATAATGTTGTCCAATGAACGCGCTTTCTTACACCT
TGTGCTTCCGGGCTCCTGTCTCAGTATTGCCCCTGTAACATTCACTCTGT
GGGCTGTAAGACATCGAGGGGCAAAACGGTTCACACCACAGCCAGTCTCG
CATGAATGTGACTCGCGTTGCACTTGCTTTTCCACGGCCATGTCTCATTT
ACCGCCAGGAGCTCCACGACGAGACCCTAGGCTGGCTCGTCGGTTGCTTC
TCCAACCAGGCCGGATTACTTGCCGTTTCTCCTTGCAGACATGTTCCAAC
TCTACAGTAAACGCTTCATTCTGCTCACCGCTATTTCTGGAGTCGCCAGT
TAACCGTGCCAATCTCTAGTGTTGTACGTTTTCGGTAGGGAAAGGCCCAA
GCTTCGGCCTTGGGGGCGCAGCCGAACGCGCTGCTGACCGTGTGGAACTT
GCAAGACCTTCAGAGCAAAGGCCCAGTGAGGTACGGCGACGTGCTGTTCC
TACAAATGGGACGACACGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8719:5296..6168+

>mRNA_Ecto-sp13_S_contig8719.20184.1 ID=mRNA_Ecto-sp13_S_contig8719.20184.1|Name=mRNA_Ecto-sp13_S_contig8719.20184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8719:5296..6168+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCGACCATTACGTACGGCTCAACGATAACTCTCCAGGCGTTCCACG
GGGGCATTCTTTGCTTCAACAACAAGGGAAAGGCCCAAGCTTCGGCCTTG
GGGGCGCAGCCGAACGCGCTGCTGACCGTGTGGAACTTGCAAGACCTTCA
GAGCAAAGGCCCAGTGAGGTACGGCGACGTGCTGTTCCTACAAATGGGAC
GACACGAGGT
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