mRNA_Ecto-sp13_S_contig87132.20180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87132.20180.1
Unique NamemRNA_Ecto-sp13_S_contig87132.20180.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: D8LCB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCB5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.310e-42
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRPAVTKYQQLNPPPVVPEGFE+WSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP
Sbjct:  123 GPRPAVTKYQQLNPPPVVPEGFENWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 193          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A804JJZ2_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804JJZ2_MUSAM)

HSP 1 Score: 98.6 bits (244), Expect = 6.330e-23
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRPA T++Q+LN  PV+PEGF  W   MD+WG+KMI A+E V+ + AIG GLD++A ++LM +GPHLLAP
Sbjct:  139 GPRPANTRFQELNSEPVIPEGFPEWKETMDSWGSKMIAAIEVVAEMAAIGFGLDKDAFTSLMKQGPHLLAP 209          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: UPI00125E54C4 (uncharacterized protein LOC116029409 isoform X2 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E54C4)

HSP 1 Score: 97.4 bits (241), Expect = 8.990e-23
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRPAVT++++LN  PV+PEGF  W   MD+WG+KMI A+ETV+ +  IG GL ++A ++LM +GPHLLAP
Sbjct:  137 GPRPAVTRFKELNSEPVIPEGFPEWKDTMDSWGHKMISAIETVAEMAGIGFGLPKDAFTSLMKQGPHLLAP 207          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A3S4N4L9_9MAGN (Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4N4L9_9MAGN)

HSP 1 Score: 96.7 bits (239), Expect = 3.240e-22
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP  T++Q+LN  PVVPEGF  W   MD+WGNKMI A+E V+ + AIG GL ++A ++LM +GPHLLAP
Sbjct:  138 GPRPTNTRFQELNSEPVVPEGFPEWKETMDSWGNKMIAAIEVVAEMAAIGYGLPKDAFTSLMQQGPHLLAP 208          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A1Q3D039_CEPFO (Uncharacterized protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D039_CEPFO)

HSP 1 Score: 96.3 bits (238), Expect = 4.180e-22
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP+ T++Q+LN  PV+PEGF  WS  MD+WG+KMI A+E V+ + AIG GL ++A ++LM +GPHLLAP
Sbjct:  130 GPRPSNTRFQELNSEPVIPEGFPKWSETMDSWGHKMISAIEAVAEMAAIGFGLPKDAFTSLMKQGPHLLAP 200          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A5N6P391_9ASTR (Uncharacterized protein n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A5N6P391_9ASTR)

HSP 1 Score: 95.1 bits (235), Expect = 5.320e-22
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP  TK+Q+LN  PV+PEGF  W   MD WG+KM+ A+E V+ + AIG GL  +A ++LM +GPHLLAP
Sbjct:   73 GPRPLTTKFQELNSEPVIPEGFPEWKETMDGWGSKMVSAIEAVAEMAAIGFGLPNDAFTSLMKQGPHLLAP 143          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A1Y1HUE2_KLENI (2OG-FeII_Oxy domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUE2_KLENI)

HSP 1 Score: 96.3 bits (238), Expect = 5.330e-22
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP  T++Q+LN  PV+P GF  W+ +M+ WG KMI A+E V+ + AIG GL+ +AI+ LMH+GPHLLAP
Sbjct:  138 GPRPGKTRFQELNAEPVIPPGFPEWADVMNTWGRKMIAAVEVVAEMLAIGFGLERDAITNLMHQGPHLLAP 208          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: M5X3E7_PRUPE (Uncharacterized protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5X3E7_PRUPE)

HSP 1 Score: 94.4 bits (233), Expect = 6.280e-22
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP+ T++Q+LN  PVVPEGF  W   MD+WG KMI A+E V+ + AIG GL ++A ++LM +GPHLLAP
Sbjct:  125 GPRPSETRFQELNAEPVVPEGFPEWKDTMDSWGYKMISAIEAVAEMAAIGFGLPKDAFTSLMKQGPHLLAP 195          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A251Q927_PRUPE (Uncharacterized protein n=2 Tax=Prunus TaxID=3754 RepID=A0A251Q927_PRUPE)

HSP 1 Score: 94.4 bits (233), Expect = 7.850e-22
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP+ T++Q+LN  PVVPEGF  W   MD+WG KMI A+E V+ + AIG GL ++A ++LM +GPHLLAP
Sbjct:   55 GPRPSETRFQELNAEPVVPEGFPEWKDTMDSWGYKMISAIEAVAEMAAIGFGLPKDAFTSLMKQGPHLLAP 125          
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Match: A0A067GXR0_CITSI (Uncharacterized protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067GXR0_CITSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.220e-21
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIGLGLDEEAISTLMHEGPHLLAP 213
            GPRP+ T++Q+LN  PV+P+GF  W   MD+WG+KMI A+E V+ + AIG GL ++A ++LM +GPHLLAP
Sbjct:  130 GPRPSNTRFQELNSEPVIPDGFPEWKETMDSWGHKMISAIEVVAEMAAIGFGLPKDAFTSLMKQGPHLLAP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87132.20180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB5_ECTSI3.310e-4298.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A804JJZ2_MUSAM6.330e-2359.15(wild Malaysian banana) hypothetical protein n=1 T... [more]
UPI00125E54C48.990e-2357.75uncharacterized protein LOC116029409 isoform X2 n=... [more]
A0A3S4N4L9_9MAGN3.240e-2259.15Flavonol synthase/flavanone 3-hydroxylase n=1 Tax=... [more]
A0A1Q3D039_CEPFO4.180e-2257.75Uncharacterized protein n=1 Tax=Cephalotus follicu... [more]
A0A5N6P391_9ASTR5.320e-2256.34Uncharacterized protein n=2 Tax=Heliantheae allian... [more]
A0A1Y1HUE2_KLENI5.330e-2256.342OG-FeII_Oxy domain-containing protein n=1 Tax=Kle... [more]
M5X3E7_PRUPE6.280e-2257.75Uncharacterized protein n=1 Tax=Prunus persica Tax... [more]
A0A251Q927_PRUPE7.850e-2257.75Uncharacterized protein n=2 Tax=Prunus TaxID=3754 ... [more]
A0A067GXR0_CITSI1.220e-2154.93Uncharacterized protein n=1 Tax=Citrus sinensis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87132contigEcto-sp13_S_contig87132:1..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score149.4
Seed ortholog evalue6.2e-34
Seed eggNOG ortholog2880.D8LCB5
Model size213
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dioxygenase activity
EggNOG OGs2QR0G@2759,COG3491@1
Cds size213
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464144.591504-CDS-Ecto-sp13_S_contig87132:0..1081681464144.591504-CDS-Ecto-sp13_S_contig87132:0..108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87132 1..108 -
1681464144.6028733-CDS-Ecto-sp13_S_contig87132:462..5671681464144.6028733-CDS-Ecto-sp13_S_contig87132:462..567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87132 463..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87132.20180.1prot_Ecto-sp13_S_contig87132.20180.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87132 1..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87132.20180.1

>prot_Ecto-sp13_S_contig87132.20180.1 ID=prot_Ecto-sp13_S_contig87132.20180.1|Name=mRNA_Ecto-sp13_S_contig87132.20180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
GPRPAVTKYQQLNPPPVVPEGFESWSTIMDAWGNKMIGALETVSRLCAIG
LGLDEEAISTLMHEGPHLLAP
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mRNA from alignment at Ecto-sp13_S_contig87132:1..567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87132.20180.1 ID=mRNA_Ecto-sp13_S_contig87132.20180.1|Name=mRNA_Ecto-sp13_S_contig87132.20180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87132:1..567- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGCGGCCCGCCGTGACAAAGTACCAGCAGCTCAACCCCCCGCCCGT CGTGCCAGAAGGCTTCGAGAGTTGGTCTACGATCATGGACGCGTGGGGAA ACAAGGTGCGTTTGCGCGATGAATTCACAAGCATTTGCAGTCTTACAGGT TTTGACTCCCGCTTCTTGTCCATCCAGGCACCGCGGTTAACTCGTTGGCA ACGAAAACGATGAACACCCAAATTCTATACTTTGCGATCTGCATCAAACA CGTTCGTTGTCAACGCCATACCGGGTAGGGAAACGCGTGCTCTATCAGCC GATTTAGCCGGGCCTGCTGTGTGTCGAATTCGTGCGTTTTTAGTCATCAC TACTATGATTTTGCTGTTTGCGGGCGTCTCGTGTTGGGTGCATGTGGGTT TCGTCACGGTGTTGGTTGGTTGATTGCTGATACGCGATGCGTCTCCACCA TGTTATCAGATGATTGGCGCGCTGGAGACGGTCTCGCGGCTGTGCGCTAT TGGTCTCGGGCTAGACGAGGAAGCTATTTCAACTCTCATGCACGAGGGCC CGCATCTCCTGGCCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87132:1..567-

>mRNA_Ecto-sp13_S_contig87132.20180.1 ID=mRNA_Ecto-sp13_S_contig87132.20180.1|Name=mRNA_Ecto-sp13_S_contig87132.20180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87132:1..567- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCGCGGCCCGCCGTGACAAAGTACCAGCAGCTCAACCCCCCGCCCGT
CGTGCCAGAAGGCTTCGAGAGTTGGTCTACGATCATGGACGCGTGGGGAA
ACAAGATGATTGGCGCGCTGGAGACGGTCTCGCGGCTGTGCGCTATTGGT
CTCGGGCTAGACGAGGAAGCTATTTCAACTCTCATGCACGAGGGCCCGCA
TCTCCTGGCCCCC
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