mRNA_Ecto-sp13_S_contig871.20177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Match: D7G2H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H6_ECTSI) HSP 1 Score: 1436 bits (3717), Expect = 0.000e+0 Identity = 863/1083 (79.69%), Postives = 902/1083 (83.29%), Query Frame = 2
Query: 1355 QGEREEHVFGQGFWIALRLDLIQWFMPLPIAGTAGTATDDYEAEMSSARPPGENLIHGATAAASSAAMTSTPXXXXXXXX--DSDTEDTEEANVLKLVESVSVRASVCGLALATWRGADNRDGFALDIESVDASTSSSGGGSSGSGGKHVELRLHAVRLSRLHVALDDPPHACGRRASGEGGESVPPSPPSFGGRRLSRLWIGRHQSYRDNRCSPRLPTTPTHGKGSVVSVPAAPGSGSPTDGDNTAAATCDASAFGKDKVMNNHNAGEPQSSAAADIPPDAGGLRQQPGLAAGFLGNSLGRIRSAAKLVIPXXXXXXXXXXXXXXXXXXXXXXXATPLEDASRSPRRGVMKNVGFSRRRASSASPSAAKPPSKLGPTPPLPPRTQLLPPRLVTGTSSAPDGAVPDRKGAVAPPPGTSGEGDVVSNPGATNLVVLDGLRLVWKLEIRDSVFLFISDAVESFTTPASASHSGEEDDSSPFREVNETASVKSRAHAPDNAMADSAASGLSHSGRWRSSSFVSPSQGGNGSGGGGVTARRVSDPGNPVLRLNAVLPATIPEGAGGXXXXXXG-----IRMPKCTTSSPVRTQALSEAACGGEDGGGRSSSASVGSKQQQRSSGSPHGSGCSRDEGGGXXXXXXXXXXXXXXXXXGESSRSPCRFRSTLPRIDTEGGRSPETIRSPATFVARSPDRSREASSAGSEFGFMASPATESVFSPRGGRQEGNYDPNSLLQWLNENFNQPTRDQKQPTTPNKREDIHSSVSATAAATAASRGGWAGSPSHQGRLVSSSSPSSLPRDSSSVSPRQSGSPRGESKGGIFISGETAARAGGSNHGGGG-TQGSDGAPGKRHIEFEVHLKNPQIKLLGDNASLILCAEGADVEARTYGTWGVVSSSPSSLGASALPSGYFSSLRRKDVKVKLEKARVFSLPVSEEGLDRWVEHGTASTAGVVSPAPRSGAPKSSLAAAARFSPPPVGRTRNPXXXXXXXPVKSPFLPRGAEAGAAEVQTKTGRDVSAAKRFFAPSPSSSPTXXXXXXXXXXSTGNGHDGTAGADGEANDRPTIGASGSRPAAECAESGARSSKDE 4579
QGEREEHVFGQGFWIALRLDLIQWFMPLPIAGTA ATDDYEAEMSSA PPGEN HGATA STP TED EEAN+L LVESVSVRASV GLALATWRGADNRDGFALDI+S+DASTS S G SS SG KHVELRL+AVRLSRL VALDDP HA RR SGEGGES+PPSPPSFGG+RLSRLWIGR SYRD+R +PRLPTTPTHGKGS+VSVPAAPGSGSPTDGDN AAATCDASAFG DK N+HNAGE QS AAAD+PPDA GLRQQP LAAG LGNS+GRIRSAA+LVIPXXXXXXXXXXXXXXXXXXXXXXX EDASRSPRRG +KNV F RRRAS ASPSA KPPSK GPTPPL PRT LLPPR T TSSAPDGAVPDRK AVAPPP TSGE DVV+NPGATNLVVLDGLRLVW LEIRDSVFLFISDAVESFTTP ASHSGEEDDS+PFR+VNETAS K RA APDNA ADSAASGLS SGRWR SSFVSPSQG NGSGGGGVTARR SDPGNPVLRLNAVLPATIPEG G XXXXXX IRMPK TSSPVRTQALSEAACG EDGGGRS+SA+VGSK++Q+SS SP+GSG SRDE GG GE+SRSPCRFRST PRIDTEGGRSPETIRSPA FVARSPDRSREASSAGSE FMASPA ESV SPRGGR+EGN DPNSLL WLNENFNQPTRDQKQPT+PN + DIHSS S+ S GGWAGSP+H+GRLVSS SPSSLPRD SSVSPRQSGSPR ESKG + I GET AR TQGSDGAPGKRHIEFEVHLKNPQIKLLGDNASLILCAEGADVEARTYGTWGVVSSSP+S GASA SGYFSSLRRKD+KVKLEKARVFSLPVSEEGLDRWVEHGTA+T GVVSPAPRSGAPKSSLAAAAR+SPPPVGRTRN PV SPFLP GAE GAAEV+TKTGRDVS AKRFFAPSP+SS XXX S GN +DGT GADGEA DRPTIGA GS PAAECAE+GAR S DE
Sbjct: 2171 QGEREEHVFGQGFWIALRLDLIQWFMPLPIAGTAAAATDDYEAEMSSATPPGENSRHGATAXXXXXXXXSTPQTAQRPTAGVSEPTEDPEEANILTLVESVSVRASVRGLALATWRGADNRDGFALDIDSIDASTSGSIGDSSASG-KHVELRLYAVRLSRLDVALDDPSHADSRRESGEGGESLPPSPPSFGGQRLSRLWIGRRLSYRDSRGTPRLPTTPTHGKGSMVSVPAAPGSGSPTDGDNAAAATCDASAFGNDKAKNSHNAGENQSPAAADVPPDAEGLRQQPKLAAGLLGNSVGRIRSAARLVIPXXXXXXXXXXXXXXXXXXXXXXXXXXXEDASRSPRRGNIKNVRFPRRRASCASPSA-KPPSKSGPTPPLSPRTPLLPPRPGTATSSAPDGAVPDRKVAVAPPPRTSGEKDVVANPGATNLVVLDGLRLVWTLEIRDSVFLFISDAVESFTTPQCASHSGEEDDSAPFRDVNETASAKRRAPAPDNASADSAASGLSRSGRWRPSSFVSPSQGANGSGGGGVTARRASDPGNPVLRLNAVLPATIPEGTGXXXXXXXXXXXXXIRMPKSATSSPVRTQALSEAACGSEDGGGRSNSAAVGSKEKQQSSRSPNGSGYSRDEEGGSEGEKESGEQGDGNDGGGENSRSPCRFRSTPPRIDTEGGRSPETIRSPAAFVARSPDRSREASSAGSELSFMASPAMESVSSPRGGRREGNDDPNSLLHWLNENFNQPTRDQKQPTSPNNKGDIHSS-SSXXXXXXXSTGGWAGSPAHRGRLVSSFSPSSLPRDISSVSPRQSGSPRRESKG-VVIGGETTARXXXXXXXXXXXTQGSDGAPGKRHIEFEVHLKNPQIKLLGDNASLILCAEGADVEARTYGTWGVVSSSPASPGASAFRSGYFSSLRRKDIKVKLEKARVFSLPVSEEGLDRWVEHGTATTEGVVSPAPRSGAPKSSLAAAARYSPPPVGRTRNSPSSSGPPPVTSPFLPTGAEGGAAEVKTKTGRDVSPAKRFFAPSPASSXXXXXARTAGATSIGNRNDGTTGADGEAIDRPTIGAPGSIPAAECAENGARRSTDE 3249
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Match: A0A6H5L9Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y5_9PHAE) HSP 1 Score: 529 bits (1362), Expect = 3.080e-149 Identity = 299/355 (84.23%), Postives = 309/355 (87.04%), Query Frame = 1
Query: 1 ASGPSTDPRRRGSSSPHASPCQSPVSRGQNTRIRPESRRYQHPNNTPPCPLSGLDRERGSGGCGGNVYGRRTSAAAALGSAAAVAAEAFSSEEPSLHQQHQQAGRGSFPSLSPSNSVGV-PFDSGLPCRNLGGGIRMDWPAFQAKRGAGYVRDGGNDGTTMGLGDSSGTFGARHSVAFVAEIMVILDIEWACTGHAGPNGHHLEILSTAGTVGQGREDGRGAVAGXXXXXXXXXXXXXXXXXXXXXGGAGLSSPSIPASRPANPAVAGNRSETNNSAAAASAKGHSDLWAPYRATGLKLKISAEISPDKIGGGGGG----DRHSPHGQGGACVPPAASPIPVRRTISSSGDGSLG 1050
ASGP DPRRRGSSSPHASPCQSPVSRGQ+TR+RP+SRRYQHPNNTP CPLSGLDRERGSGGCGGNVYGR TSAAAALGSAAAVAA+ FSSEEPSLH Q QQAGRGSFP LSPSNS+GV PFDSGLP RN+GGG+ MD PAF AKRGAG V DGGN GTT+GLGDSSGTFGARHSVAFVAEIM+ LDI WAC GHAGPNGHHLEILSTAGTVGQGRED RGAV G XXXXXXXXXXXXXXGGAG SSPSIPASRPANPA GNRSETNNS AA S KGHSDLWAPYRATGLKLKISAEISPDKIG G DR SP GQGGACV PA SP+PVRRTISSSGDGSLG
Sbjct: 1978 ASGPPVDPRRRGSSSPHASPCQSPVSRGQDTRVRPDSRRYQHPNNTPACPLSGLDRERGSGGCGGNVYGRSTSAAAALGSAAAVAADTFSSEEPSLHPQRQQAGRGSFPPLSPSNSMGVAPFDSGLPSRNVGGGMGMDCPAFMAKRGAGDVLDGGNGGTTIGLGDSSGTFGARHSVAFVAEIMLKLDIAWACAGHAGPNGHHLEILSTAGTVGQGREDVRGAVDGSAATIATXXXXXXXXXXXXXXGGAGFSSPSIPASRPANPAPEGNRSETNNSTAATSTKGHSDLWAPYRATGLKLKISAEISPDKIGSGXXXXXXXDRQSPQGQGGACVSPATSPVPVRRTISSSGDGSLG 2332
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Match: A0A7S1ZM56_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZM56_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.320e-6 Identity = 48/157 (30.57%), Postives = 68/157 (43.31%), Query Frame = 2
Query: 6074 YDSRSVLSPTLLQDSSKPSTTSICTSCKQRFIPDENAWDSCRIHCDSDGEEGVFVIDGVGHTTDATRPQGRAGRWSCCGS--EDGTTATGCTPRPHKPKEIMISIRADGGPPVLVGNTEVSVFKHLEVNIFPSVHYNLCINIRRDEAAALQQYFKLE 6538
+D +V++ LL P C C F N +SC H G++ + P + G WSCCG+ ED A GC RPH KE +R + P + G T ++KH E+NIFPS L + + +D A YF L+
Sbjct: 545 HDPTAVITAELLGTKRSP-----CQRCGVEFDMTANESNSCVFH------SGLYQMS----------PLTKIGAWSCCGAVLED---AQGCVFRPHTGKERAAQVRVEALPRAVDGLT---MYKHFEINIFPSARAVLVVQLTKDLAKLFMSYFSLD 674
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Match: A0A482SFQ1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFQ1_9ARCH) HSP 1 Score: 62.0 bits (149), Expect = 8.320e-6 Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 2
Query: 6347 RPHKPKEIMISIRADGGPPVLVGNTEVSVFKHLEVNIFPSVHYNLCINIRRDEAAALQQYFKLE 6538
RPH KE+MIS+RA+ P + N EV++FK L+V+IFP +Y+L + + R+ + L +YF LE
Sbjct: 2 RPHICKEVMISLRAEVYPTTKIDNVEVTIFKTLDVSIFPGANYDLKLQVTRNLSDFLHKYFSLE 65
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Match: A0A7S2M6M4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6M4_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-5 Identity = 47/142 (33.10%), Postives = 62/142 (43.66%), Query Frame = 2
Query: 6077 DSRSVLSPTLLQDSSKPSTTSICTSCKQRFIPD-ENAWDSCRIHCDSDGEEGVFVIDGVGHTTDATRPQGRAGRWSCCGSEDGTTATGCTPRPHKPKEIMISIRADGGPPVLVGNTEVSVFKHLEVNIFPSVHYNLCINIRR 6499
D SVL P L S S C C F N ++CR H G F I G+W+CC + + A GC PH KE +R + PPV+ G +S++ HLEVNIFPSV + L + I +
Sbjct: 315 DPTSVLEPVL------GSKRSPCQRCGSTFSHSLNNGLEACRFH------SGRFSI----------------GKWTCCQAR-ASNAPGCKTAPHTGKERTAVVRVEALPPVVEG---ISLYSHLEVNIFPSVPHTLRVQISK 424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig871.20177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig871.20177.1 >prot_Ecto-sp13_S_contig871.20177.1 ID=prot_Ecto-sp13_S_contig871.20177.1|Name=mRNA_Ecto-sp13_S_contig871.20177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1703bp MPLPIAGTAGTATDDYEAEMSSARPPGENLIHGATAAASSAAMTSTPQTTback to top mRNA from alignment at Ecto-sp13_S_contig871:2876..20535- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig871.20177.1 ID=mRNA_Ecto-sp13_S_contig871.20177.1|Name=mRNA_Ecto-sp13_S_contig871.20177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=17660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig871:2876..20535- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig871:2876..20535- >mRNA_Ecto-sp13_S_contig871.20177.1 ID=mRNA_Ecto-sp13_S_contig871.20177.1|Name=mRNA_Ecto-sp13_S_contig871.20177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=5109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig871:2876..20535- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |